keyword
MENU ▼
Read by QxMD icon Read
search

Plant biology

keyword
https://www.readbyqxmd.com/read/28441779/glyoxalase-goes-green-the-expanding-roles-of-glyoxalase-in-plants
#1
REVIEW
Subramanian Sankaranarayanan, Muhammad Jamshed, Abhinandan Kumar, Logan Skori, Sabine Scandola, Tina Wang, David Spiegel, Marcus A Samuel
The ubiquitous glyoxalase enzymatic pathway is involved in the detoxification of methylglyoxal (MG), a cytotoxic byproduct of glycolysis. The glyoxalase system has been more extensively studied in animals versus plants. Plant glyoxalases have been primarily associated with stress responses and their overexpression is known to impart tolerance to various abiotic stresses. In plants, glyoxalases exist as multigene families, and new roles for glyoxalases in various developmental and signaling pathways have started to emerge...
April 24, 2017: International Journal of Molecular Sciences
https://www.readbyqxmd.com/read/28441534/managing-the-plant-microbiome-for-biocontrol-fungi-examples-from-hypocreales
#2
REVIEW
Ryan M Kepler, Jude E Maul, Stephen A Rehner
Feeding an increasing global population requires continued improvements in agricultural efficiency and productivity. Meeting estimated future production levels requires the adoption of practices that increase output without environmental degradation associated with external inputs to supplement nutrition or control pests. Enriching the community of microbes associated with plants in agricultural systems for those providing ecosystem services such as pest control is one possible component towards achieving sustainable productivity increases...
April 22, 2017: Current Opinion in Microbiology
https://www.readbyqxmd.com/read/28441457/autophagy-contributes-to-falcarindiol-induced-cell-death-in-breast-cancer-cells-with-enhanced-endoplasmic-reticulum-stress
#3
Tingting Lu, Ming Gu, Yan Zhao, Xinyu Zheng, Chengzhong Xing
Falcarindiol (FAD) is a natural polyyne have been found in many food and dietary plants. It has been found to have various beneficial biological activities. In this study, we demonstrated its anticancer function and mechanism in breast cancer cells. We found that FAD preferentially induces cell death in breast cancer cells. FAD-induced cell death is caspase-dependent. However, FAD induces autophagy to contribute to the cell death. Blocking autophagy by either chemical inhibitors or genetic knockout of autophagy signaling component inhibits FAD-induced cell death...
2017: PloS One
https://www.readbyqxmd.com/read/28441437/quantitative-modeling-of-responses-to-chronic-ionizing-radiation-exposure-using-targeted-and-non-targeted-effects
#4
Igor Shuryak
The biological effects of chronic ionizing radiation exposure can be difficult to study, but important to understand in order to protect the health of occupationally-exposed persons and victims of radiological accidents or malicious events. They include targeted effects (TE) caused by ionizations within/close to nuclear DNA, and non-targeted effects (NTE) caused by damage to other cell structures and/or activation of stress-signaling pathways in distant cells. Data on radiation damage in animal populations exposed over multiple generations to wide ranges of dose rates after the Chernobyl nuclear-power-plant accident are very useful for enhancing our understanding of these processes...
2017: PloS One
https://www.readbyqxmd.com/read/28440700/selection-and-assessment-of-plant-growth-promoting-rhizobacteria-pgpr-for-biological-control-of-multiple-plant-diseases
#5
Ke Liu, Molli Newman, John A McInroy, Chia-Hui Hu, Joseph W Kloepper
A study was designed to screen individual strains of plant growth-promoting rhizobacteria (PGPR) for broad-spectrum disease suppression in vitro and in planta. In a preliminary screen, 28 of 196 strains inhibited eight different tested pathogens in vitro. In a secondary screen, these 28 strains showed broad spectrum antagonistic activity to six different genera of pathogens, and 24 of the 28 strains produced five traits reported to be related to plant growth promotion, including nitrogen fixation, phosphate solubilization, indole-3-acetic acid (IAA) production, siderophore production, and biofilm formation...
April 25, 2017: Phytopathology
https://www.readbyqxmd.com/read/28440628/edaphic-conditions-regulate-denitrification-directly-and-indirectly-by-altering-denitrifier-abundance-in-wetlands-along-the-han-river-china
#6
Ziqian Xiong, Laodong Guo, Quanfa Zhang, Guihua Liu, Wenzhi Liu
Riparian wetlands play a critical role in retaining nitrogen (N) from upland runoff and improving river water quality, mainly through biological processes such as soil denitrification. However, the relative contribution of abiotic and biotic factors to riparian denitrification capacity remains elusive. Here we report the spatio-temporal dynamics of potential and unamended soil denitrification rates in 20 wetlands along the Han River, an important water source in central China. We also quantified the abundance of soil denitrifying microorganisms using nirK and nirS genes...
April 25, 2017: Environmental Science & Technology
https://www.readbyqxmd.com/read/28440581/the-toxicity-of-silver-to-soil-organisms-exposed-to-silver-nanoparticles-and-silver-nitrate-in-biosolids-amended-field-soil
#7
Alexander H Jesmer, Jessica R Velicogna, Dina M Schwertfeger, Richard P Scroggins, Juliska I Princz
The use of engineered silver nanoparticles (AgNP) is widespread, with expected release to the terrestrial environment through the application of biosolids onto agricultural lands. The toxicity of AgNP and AgNO3 (as ionic Ag(+) ) to plant (Elymus lanceolatus and Trifolium pratense) and soil invertebrate (Eisenia andrei and Folsomia candida) species was assessed using silver-amended biosolids applied to a natural sandy loam soil. Bioavailable Ag(+) in soil samples was estimated using an ion-exchange technique applied to KNO3 soil extracts while exposure to dispersible AgNP was verified by single particle-ICP-MS and TEM-EDS analysis...
April 25, 2017: Environmental Toxicology and Chemistry
https://www.readbyqxmd.com/read/28439870/chemiluminescence-based-detection-of-peptide-activity-and-peptide-receptor-binding-in-plants
#8
Mari Wildhagen, Markus Albert, Melinka A Butenko
In living organisms, physical interaction of ligand molecules with their cognate receptors is an indispensable requirement for the initiation of cellular signaling pathways. To technically prove the biochemical interaction of ligands with their corresponding receptor, a biologically active but labeled peptide is required. Easily scorable bioassays, such as the production of reactive oxygen species, can be used to quantify the activity of a peptide. By using chemiluminescent probes, such as acridinium esters, as conjugates to label peptide ligands of interest, quantitative measurements of ligand-receptor binding can be performed in standard luminometers...
2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/28439869/studying-protein-protein-interactions-in-planta-using-advanced-fluorescence-microscopy
#9
Marc Somssich, Rüdiger Simon
The formation of protein complexes through direct protein-protein interaction is essential for virtually every biological process, and accordingly the ability to determine the interaction properties of specific proteins is important to understand these processes. Förster resonance energy transfer (FRET) measurements are state-of-the-art confocal fluorescence microscopy- and imaging-based techniques that allow the analysis of protein interactions in vivo and in planta, in specific compartments of single cells or tissues...
2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/28439867/mapping-protein-protein-interactions-using-affinity-purification-and-mass-spectrometry
#10
Chin-Mei Lee, Christopher Adamchek, Ann Feke, Dmitri A Nusinow, Joshua M Gendron
The mapping of protein-protein interaction (PPI) networks and their dynamics are crucial steps to deciphering the function of a protein and its role in cellular pathways, making it critical to have comprehensive knowledge of a protein's interactome. Advances in affinity purification and mass spectrometry technology (AP-MS) have provided a powerful and unbiased method to capture higher-order protein complexes and decipher dynamic PPIs. However, the unbiased calling of nonspecific interactions and the ability to detect transient interactions remains challenging when using AP-MS, thereby hampering the detection of biologically meaningful complexes...
2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/28439865/identification-of-protein-dna-interactions-using-enhanced-yeast-one-hybrid-assays-and-a-semiautomated-approach
#11
Allison Gaudinier, Michelle Tang, Anne-Maarit Bågman, Siobhan M Brady
Yeast one-hybrid assays are an in vitro gene-centered approach to map transcription factor-DNA interactions. Here we describe this method and adaptations to screen for interactions between plant transcriptional regulators and their targets. Of particular note, the use of yeast one-hybrid assays fills in an important gap in available methodologies. When one is interested in a specific biological process of interest, the yeast one-hybrid assay is the only method that allows researchers to identify upstream regulators of the biological process of interest...
2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/28439864/long-term-confocal-imaging-of-arabidopsis-thaliana-roots-for-simultaneous-quantification-of-root-growth-and-fluorescent-signals
#12
Delyana Stoeva, Christian Göschl, Bruce Corliss, Wolfgang Busch
Observing cellular and molecular processes in living organisms is key for understanding many important biological processes. Confocal microscopy is excellently suited for this as it enables the observation of molecules and cells in tissue layers of living organisms in three dimensions over time. However, in continuously growing organs, such as plant roots, observations over extended time spans become difficult as the specimen quickly grows out the field of view. Here, we provide a protocol that allows for the acquisition of confocal microscope time-lapse images of root tips spanning many hours, as the growing root tip is tracked and the microscopy is automatized to change the position of the stage...
2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/28439857/assessing-distribution-and-variation-of-genome-wide-dna-methylation-using-short-read-sequencing
#13
Jörg Hagmann, Claude Becker
DNA methylation is one of the most prominent epigenetic marks and is particularly complex in plant genomes. Whole-genome bisulfite sequencing (WGBS) using short reads has become the standard tool to study genome-wide patterns of DNA methylation. The goal of the present protocol is to enable readers to perform WGBS on both the wet lab and the computational side. We briefly outline important steps in bisulfite library preparation, then focus on the different aspects of DNA methylation analysis, from read mapping to identifying biologically relevant differential methylation between different samples...
2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/28439854/user-guide-for-the-lore1-insertion-mutant-resource
#14
Terry Mun, Anna Małolepszy, Niels Sandal, Jens Stougaard, Stig U Andersen
Lotus japonicus is a model legume used in the study of plant-microbe interactions, especially in the field of biological nitrogen fixation due to its ability to enter into a symbiotic relationship with a soil bacterium, Mesorhizobium loti. The LORE1 mutant population is a valuable resource for reverse genetics in L. japonicus due to its non-transgenic nature, high tagging efficiency, and low copy count. Here, we outline a workflow for identifying, ordering, and establishing homozygous LORE1 mutant lines for a gene of interest, LjFls2, including protocols for growth and genotyping of a segregating LORE1 population...
2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/28439825/small-rna-profiling-by-next-generation-sequencing-using-high-definition-adapters
#15
Martina Billmeier, Ping Xu
Small RNAs (sRNAs) as key regulators of gene expression play fundamental roles in many biological processes. Next-generation sequencing (NGS) has become an important tool for sRNA discovery and profiling. However, NGS data often show bias for or against certain sequences which is mainly caused by adapter oligonucleotides that are ligated to sRNAs more or less efficiently by RNA ligases. In order to reduce ligation bias, High-definition (HD) adapters for the Illumina sequencing platform were developed. However, a large amount of direct 5' and 3' adapter ligation products are often produced when the current commercially available kits are used for cloning with HD adapters...
2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/28439457/pollinator-diversity-and-reproductive-success-of-epipactis-helleborine-l-crantz-orchidaceae-in-anthropogenic-and-natural-habitats
#16
Agnieszka Rewicz, Radomir Jaskuła, Tomasz Rewicz, Grzegorz Tończyk
BACKGROUND: Epipactis helleborine is an Eurasian orchid species which prefers woodland environments but it may also spontaneously and successfully colonise human-made artificial and disturbed habitats such as roadsides, town parks and gardens. It is suggested that orchids colonising anthropogenic habitats are characterised by a specific set of features (e.g., large plant size, fast flower production). However, as it is not well known how pollinator diversity and reproductive success of E...
2017: PeerJ
https://www.readbyqxmd.com/read/28439259/increased-biological-activity-of-aneurinibacillus-migulanus-strains-correlates-with-the-production-of-new-gramicidin-secondary-metabolites
#17
Faizah N Alenezi, Imen Rekik, Ali Chenari Bouket, Lenka Luptakova, Hedda J Weitz, Mostafa E Rateb, Marcel Jaspars, Stephen Woodward, Lassaad Belbahri
The soil-borne gram-positive bacteria Aneurinibacillus migulanus strain Nagano shows considerable potential as a biocontrol agent against plant diseases. In contrast, A. migulanus NCTC 7096 proved less effective for inhibition of plant pathogens. Nagano strain exerts biocontrol activity against some gram-positive and gram-negative bacteria, fungi and oomycetes through the production of gramicidin S (GS). Apart from the antibiotic effects, GS increases the rate of evaporation from the plant surface, reducing periods of surface wetness and thereby indirectly inhibiting spore germination...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28438865/effect-of-hydrogen-dioxide-treatment-on-the-osteogenic-potential-of-duck-beak-bone-derived-natural-bioceramic-microparticles
#18
Joong-Hyun Kim, Min-Ho Park, Seok Jin Jang, Soo Jin Son, Jae Yeon Lee, Jun Sik Son, Se Eun Kim, Seong Soo Kang, Seok Hwa Choi
As an alternative material to the autogenous bone, duck-beak bone particle for bone substitute have been attracting great attention due to their biological properties. To deliver the most favorable outcome of medical treatment, it is essential to study the effect of various processing methods of the duck-beak bone. In this study, we compared the two deproteinizing agents for manufacturing duck-beak bone. Group 1 was treated by a conventional chemical agent (ethylenediamine) and Group 2 by hydrogen dioxide (H2O2)...
May 2017: In Vivo
https://www.readbyqxmd.com/read/28438701/unique-parallel-radiations-of-high-mountainous-species-of-the-genus-sedum-crassulaceae-on-the-continental-island-of-taiwan
#19
Takuro Ito, Chih-Chieh Yu, Koh Nakamura, Kuo-Fang Chung, Qin-Er Yang, Cheng-Xin Fu, Zhe-Chen Qi, Goro Kokubugata
We explored the temporal and spatial diversification of the plant genus Sedum L. (Crassulaceae) in Taiwan based on molecular analysis of nrITS and cpDNA sequences from East Asian Sedum members. Our phylogenetic and ancestral area reconstruction analysis showed that Taiwanese Sedum comprised two lineages that independently migrated from Japan and Eastern China. Furthermore, the genetic distances among species in these two clades were smaller than those of other East Asian Sedum clades, and the Taiwanese members of each clade occupy extremely varied habitats with similar niches in high-mountain regions...
April 21, 2017: Molecular Phylogenetics and Evolution
https://www.readbyqxmd.com/read/28438675/integrating-cell-biology-and-proteomic-approaches-in-plants
#20
Tomáš Takáč, Olga Šamajová, Jozef Šamaj
Significant improvements of protein extraction, separation, mass spectrometry and bioinformatics nurtured advancements of proteomics during the past years. The usefulness of proteomics in the investigation of biological problems can be enhanced by integration with other experimental methods from cell biology, genetics, biochemistry, pharmacology, molecular biology and other omics approaches including transcriptomics and metabolomics. This review aims to summarize current trends integrating cell biology and proteomics in plant science...
April 21, 2017: Journal of Proteomics
keyword
keyword
48729
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"