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D-ribose

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https://www.readbyqxmd.com/read/30312697/the-non-enzymatic-glycation-of-ldl-proteins-results-in-biochemical-alterations-a-correlation-study-of-apo-b-100-age-with-obesity-and-rheumatoid-arthritis
#1
Yi Li, Mohd Shahnawaz Khan, Firoz Akhter, Fohad Mabood Husain, Saheem Ahmad, Lihui Chen
Advanced glycation end-products (AGEs) can aggregate amid incessant inflammation, as may be available in patients with rheumatoid arthritis. d-Ribose reacts more promptly than glucose monosaccharide to the proteins and forms heterogeneous group of products known as AGEs. Obesity includes persons with provocative joint inflammation with increased lipid profile. Immunogenic evidences recommend a cross-sectional relationship between glycated LDL-Apo B100 and inflammation. The point of this examination was to look at the connection between d-ribose glycated ApoB100 (ApoB100-AGE) with obesity and rheumatoid arthritis...
October 9, 2018: International Journal of Biological Macromolecules
https://www.readbyqxmd.com/read/30299587/synthesis-of-cytokinins-via-enzymatic-arsenolysis-of-purine-nucleosides
#2
Vladimir E Oslovsky, Mikhail S Drenichev, Cyril S Alexeev, Pavel N Solyev, Roman S Esipov, Sergey N Mikhailov
This unit describes an effective method for the preparation of natural cytokinins and their synthetic derivatives based on enzymatic cleavage of the N-glycosidic bond of N6 -substituted adenosine or O6 -substituted inosine derivatives in the presence of purine nucleoside phosphorylase (PNP) and Na2 HAsO4 . The arsenolysis reaction is irreversible due to the hydrolysis of the resulting α-D-ribose-1-arsenate. As a result, the desired products are formed in near-quantitative yields, as indicated by high-performance liquid chromatography (HPLC) analysis, and can easily be isolated...
October 9, 2018: Current Protocols in Nucleic Acid Chemistry
https://www.readbyqxmd.com/read/30284013/2-deoxy-d-ribose-5-phosphate-aldolase-dera-applications-and-modifications
#3
REVIEW
Meera Haridas, Eman M M Abdelraheem, Ulf Hanefeld
2-Deoxy-D-ribose-5-phosphate aldolase (DERA) is a class I aldolase that offers access to several building blocks for organic synthesis. It catalyzes the stereoselective C-C bond formation between acetaldehyde and numerous other aldehydes. However, the practical application of DERA as a biocatalyst is limited by its poor tolerance towards industrially relevant concentrations of aldehydes, in particular acetaldehyde. Therefore, the development of proper experimental conditions, including protein engineering and/or immobilization on appropriate supports, is required...
October 3, 2018: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/30269844/polysaccharide-extracts-of-astragalus-membranaceus-and-atractylodes-macrocephala-promote-intestinal-epithelial-cell-migration-by-activating-the-polyamine-mediated-k-channel
#4
Dan Zeng, Can Hu, Ru-Liu Li, Chuan-Quan Lin, Jia-Zhong Cai, Ting-Ting Wu, Jing-Jing Sui, Wen-Biao Lu, Wei-Wen Chen
Astragalus membranaceus (Radix Astragali, RA) and Atractylodes macrocephala (Rhizoma Atractylodis Macrocephalae, RAM) are often used to treat gastrointestinal diseases. In the present study, we determined the effects of polysaccharides extracts from these two herbs on IEC-6 cell migration and explored the potential underlying mechanisms. A migration model with IEC-6 cells was induced using a single-edged razor blade along the diameter of cell layers in six-well polystyrene plates. The cells were grown in control media or media containing spermidine (5 μmol·L-1 , SPD), alpha-difluoromethylornithine (2...
September 2018: Chinese Journal of Natural Medicines
https://www.readbyqxmd.com/read/30230039/effects-of-quorum-sensing-inhibition-on-experimental-periodontitis-induced-by-mixed-infection-in-mice
#5
Heithem Ben Amara, Hyun Y Song, Eunju Ryu, Ji S Park, Frank Schwarz, Byeong M Kim, Bong-Kyu Choi, Ki-Tae Koo
This study aimed to verify, in in vivo settings, whether quorum-sensing inhibition molecules could attenuate alveolar bone loss induced by Porphyromonas gingivalis/Fusobacterium nucleatum co-infection and reduce the bacterial colonization of periodontal tissues. In BALB/c mice, periodontitis was induced through oral inoculation with P. gingivalis and F. nucleatum six times during a 42-d period. Quorum sensing inhibitors (a furanone compound and D-ribose) were administered simultaneously with bacterial infection...
September 19, 2018: European Journal of Oral Sciences
https://www.readbyqxmd.com/read/30194385/novel-insight-into-the-reaction-of-nitro-nitroso-and-hydroxylamino-benzothiazinones-and-of-benzoxacinones-with-mycobacterium-tuberculosis-dpre1
#6
Adrian Richter, Ines Rudolph, Ute Möllmann, Kerstin Voigt, Chun-Wa Chung, Onkar M P Singh, Michael Rees, Alfonso Mendoza-Losana, Robert Bates, Lluís Ballell, Sarah Batt, Natacha Veerapen, Klaus Fütterer, Gurdyal Besra, Peter Imming, Argyrides Argyrou
Nitro-substituted 1,3-benzothiazinones (nitro-BTZs) are mechanism-based covalent inhibitors of Mycobacterium tuberculosis decaprenylphosphoryl-β-D-ribose-2'-oxidase (DprE1) with strong antimycobacterial properties. We prepared a number of oxidized and reduced forms of nitro-BTZs to probe the mechanism of inactivation of the enzyme and to identify opportunities for further chemistry. The kinetics of inactivation of DprE1 was examined using an enzymatic assay that monitored reaction progress up to 100 min, permitting compound ranking according to kinact /Ki values...
September 7, 2018: Scientific Reports
https://www.readbyqxmd.com/read/30166128/genomic-and-metatranscriptomic-analyses-of-weissella-koreensis-reveal-its-metabolic-and-fermentative-features-during-kimchi-fermentation
#7
Sang Eun Jeong, Byung Hee Chun, Kyung Hyun Kim, Dongbin Park, Seong Woon Roh, Se Hee Lee, Che Ok Jeon
The genomic and metabolic features of Weissella koreensis, one of the major lactic acid bacteria in kimchi, were investigated through genomic, metabolic, and transcriptomic analyses for the genomes of strains KCTC 3621T , KACC 15510, and WiKim0080. W. koreensis strains were intrinsically vancomycin-resistant and harbored potential hemolysin genes that were actively transcribed although no hemolysin activity was detected. KEGG and reconstructed fermentative metabolic pathways displayed that W. koreensis strains commonly employ the heterolactic pathway to produce d-lactate, ethanol, acetate, CO2 , d-sorbitol, thiamine, and folate from various carbohydrates including d-glucose, d-mannose, d-lactose, l-malate, d-xylose, l-arabinose, d-ribose, N-acetyl-glucosamine, and gluconate, and strains KCTC 3621T and WiKim0080 additionally have metabolic pathways of d-galacturonate and d-glucoronate...
December 2018: Food Microbiology
https://www.readbyqxmd.com/read/30140615/a-comparison-of-the-anti-diabetic-potential-of-d-ribose-l-cysteine-with-insulin-and-oral-hypoglycaemic-agents-on-pregnant-rats
#8
Abraham A A Osinubi, Leke Jacob Medubi, Edidiong N Akang, Lawal K Sodiq, Titilola A Samuel, Taiwo Kusemiju, James Osolu, Danladi Madu, Olufemi Fasanmade
Over 18% of pregnant women are affected by diabetes mellitus (DM) and Insulin has been the commonest drug used in its treatment. There are reports of noncompliance to insulin due to trypanophobia, with suggestions for the use of oral hypoglycaemic agents (OHAs). However, the opposing views about the benefits and risk of oral hypoglycaemic agents (OHAs) warrant a continuous search for an alternative regimen. Therefore, this study is aimed at comparing the antidiabetic effects of d-ribose-l-cysteine (riboceine) with vildagliptin, glibenclamide, metformin, glipizide and insulin in diabetes in pregnancy...
2018: Toxicology Reports
https://www.readbyqxmd.com/read/30111644/rapid-and-specific-labeling-of-single-live-mycobacterium-tuberculosis-with-a-dual-targeting-fluorogenic-probe
#9
Yunfeng Cheng, Jinghang Xie, Kyung-Hyun Lee, Rajiv L Gaur, Aiguo Song, Tingting Dai, Hongjun Ren, Jiannan Wu, Zhaogang Sun, Niaz Banaei, Demir Akin, Jianghong Rao
Tuberculosis (TB) remains a public health crisis and a leading cause of infection-related death globally. Although in high demand, imaging technologies that enable rapid, specific, and nongenetic labeling of live Mycobacterium tuberculosis (Mtb) remain underdeveloped. We report a dual-targeting strategy to develop a small molecular probe (CDG-DNB3) that can fluorescently label single bacilli within 1 hour. CDG-DNB3 fluoresces upon activation of the β-lactamase BlaC, a hydrolase naturally expressed in Mtb, and the fluorescent product is retained through covalent modification of the Mtb essential enzyme decaprenylphosphoryl-β-d-ribose 2'-epimerase (DprE1)...
August 15, 2018: Science Translational Medicine
https://www.readbyqxmd.com/read/30110026/efficient-and-regioselective-synthesis-of-%C3%AE-lactone-glycosides-through-a-novel-debenzylative-cyclization-reaction
#10
Julien A Delbrouck, Abdellatif Tikad, Stéphane P Vincent
An efficient and regioselective approach for the construction of synthetically important γ-lactone glycosides is reported from unprotected aldoses through a new debenzylative lactonization (DBL) reaction. The scope and limitations of this DBL reaction are described starting from a series of commercially available hexoses (l-fucose, d-galactose, d-glucose) and pentoses (d-arabinose, d-ribose, d-lyxose, d-xylose) to afford the corresponding γ-lactones in good yields and without concomitant δ-lactone formation...
August 28, 2018: Chemical Communications: Chem Comm
https://www.readbyqxmd.com/read/30107125/synthesis-of-rna-nucleotides-in-plausible-prebiotic-conditions-from-ab-initio-computer-simulations
#11
Andrea Pérez-Villa, A Marco Saitta, Thomas Georgelin, Jean-François Lambert, François Guyot, Marie-Christine Maurel, Fabio Pietrucci
Understanding the mechanism of spontaneous formation of ribonucleotides under realistic prebiotic conditions is a key open issue of origins-of-life research. In cells, de novo and salvage nucleotide enzymatic synthesis combines 5-phospho-α-d-ribose-1-diphosphate (α-PRPP) and nucleobases. Interestingly, these reactants are also known as prebiotically plausible compounds. Combining ab initio molecular dynamics simulations with recently developed reaction exploration and enhanced sampling methods, we show that nucleobases and α-PRPP should spontaneously combine, under mild hydrothermal conditions, with an exothermic reaction and a facile mechanism, forming both purine and pyrimidine ribonucleotides...
September 6, 2018: Journal of Physical Chemistry Letters
https://www.readbyqxmd.com/read/30102466/6-chloropurine-ribonucleosides-from-chloropyrimidines-one-pot-synthesis
#12
Renaud Zelli, Waël Zeinyeh, Jean-Luc Décout
A one-pot glycosylation and cyclization procedure is described for the synthesis of 6-chloropurine ribonucleosides from chloropyrimidines. From such a procedure and modification of the obtained chloropurine ribonucleosides, many drug candidates or molecular tools for biological study designed from their similarity to naturally occurring nucleosides could be obtained. The synthesis begins by preparation of several amidinoaminochloropyrimidines as precursors for the one-pot procedure. Then, by adding trimethylsilyl trifluoromethanesulfonate (TMSOTf) to a mixture of a pyrimidine and 1-O-acetyl-2,3,5-tri-O-benzoyl-β-D-ribose, different 6-chloropurine ribonucleosides are obtained...
September 2018: Current Protocols in Nucleic Acid Chemistry
https://www.readbyqxmd.com/read/30101366/d-ribose-induces-nephropathy-through-rage-dependent-nf-%C3%AE%C2%BAb-inflammation
#13
Jinni Hong, Xuemei Wang, Ning Zhang, Hong Fu, Weiwei Li
Recently, aberrantly high levels of D-ribose have been discovered in type II diabetic patients. D-ribose glycates proteins more rapidly than D-glucose, resulting in the production of advanced glycation end products (AGEs). Accumulations of these products can be found in impaired renal function, but the mechanisms are poorly understood. The present study tested whether D-ribose induces renal dysfunction via the RAGE-dependent NF-κB signaling pathway. In vivo, administration of D-ribose was found to lower blood glucose and regulate insulin tolerance...
August 2018: Archives of Pharmacal Research
https://www.readbyqxmd.com/read/30095186/global-metabolomic-responses-in-urine-from-atm-deficient-mice-in-response-to-ld-50-30-gamma-irradiation-doses
#14
Evagelia C Laiakis, Tytus D Mak, Steven J Strawn, Yi-Wen Wang, Bo-Hyun Moon, Pelagie Ake, Albert J Fornace
Exposures to ionizing radiation (IR) may either be accidental or intentional, for medical purposes or even through terrorist actions. As certain populations emerge to be more radiosensitive than others, it is imperative to assess those individuals and treat them accordingly. To demonstrate the feasibility of rapid identification of such cases, we utilized the highly radiosensitive mouse model Atm-/- in the C57BL/6 background, and evaluated the urinary responses in 8-10 week old male mice at early time points (4, 24, and 72 h) after exposure to their respective LD50/30 doses [4 Gy for Atm-/- , and 8 Gy for wild type (WT)]...
August 2018: Environmental and Molecular Mutagenesis
https://www.readbyqxmd.com/read/30011856/facile-preparation-of-n-glycosylated-10-piperazinyl-artemisinin-derivatives-and-evaluation-of-their-antimalarial-and-cytotoxic-activities
#15
Yuet Wu, Silvia Parapini, Ian D Williams, Paola Misiano, Ho Ning Wong, Donatella Taramelli, Nicoletta Basilico, Richard K Haynes
According to the precepts that C-10 amino-artemisinins display optimum biological activities for the artemisinin drug class, and that attachment of a sugar enhances specificity of drug delivery, polarity and solubility so as to attenuate toxicity, we assessed the effects of attaching sugars to N-4 of the dihydroartemisinin (DHA)-piperazine derivative prepared in one step from DHA and piperazine. N -Glycosylated DHA-piperazine derivatives were obtained according to the Kotchetkov reaction by heating the DHA-piperazine with the sugar in a polar solvent...
July 13, 2018: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://www.readbyqxmd.com/read/29968540/synthesis-and-structural-elucidation-of-novel-benzothiazole-derivatives-as-anti-tubercular-agents-in-silico-screening-for-possible-target-identification
#16
Katharigatta N Venugopala, Sandeep Chandrashekharappa, Melendhran Pillay, Subhrajyoti Bhandary, Mahmoud Kandeel, Fawzi M Mahomoodally, Mohamed A Morsy, Deepak Chopra, Bandar E Aldhubiab, Mahesh Attimarad, Osama I Alwassil, Sree Harsha, Koleka Mlisana
BACKGROUND: Benzothiazole derivatives are known for anti-TB properties. Based on the known antiTB benzothiazole pharmacophore, in the present study, we described the synthesis, structural elucidation, and anti-tubercular screening of a series of novel benzothiazole (BNTZ) derivatives (BNTZ 1-7 and BNTZ 8-13). OBJECTIVE: Development of benzothiazole based anti-TB compounds. METHODS: Title compounds are synthesized by microwave method and purified by column chromatography...
July 3, 2018: Medicinal Chemistry
https://www.readbyqxmd.com/read/29968034/isomerases-and-epimerases-for-biotransformation-of-pentoses
#17
REVIEW
Zheng Fang, Wenli Zhang, Tao Zhang, Cuie Guang, Wanmeng Mu
Pentoses represent monosaccharides with five carbon atoms. They are organized into two main groups, aldopentoses and ketopentoses. There are eight aldopentoses and four ketopentoses and each ketopentose corresponds to two aldopentoses. Only D-xylose, D-ribose, and L-arabinose are natural sugars, but others belong to rare sugars that occur in very small quantities in nature. Recently, rare pentoses attract much attention because of their great potentials for commercial applications, especially as precursors of many important medical drugs...
September 2018: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/29953880/diabetex-a-novel-approach-for-diabetic-wound-healing
#18
Alshaymaa Amin Zaki El-Bahy, Yara Mohamed Aboulmagd, Mohanad Zaki
INTRODUCTION AND AIM: Wound healing is an orderly complex process involving inflammation, clotting, re-epithelialization, neovascularization and wound closure. In diabetic patients, such process is impaired and delayed, posing negative economic as well as social consequences. Diabetex, (patency# EP 0877617 A1) composed of L-alanine, d-ribose, nicotinic acid and calcium ascorbate, which was initially introduced to treat cancer is thought to have anti- diabetic effects. The present study was designed to investigate the therapeutic merit of diabetex as well as the cellular mechanisms involved in such effects and its safety profile compared to metformin in wounded diabetic rats...
August 15, 2018: Life Sciences
https://www.readbyqxmd.com/read/29944092/ruegeria-denitrificans-sp-nov-a-marine-bacterium-in-the-family-rhodobacteraceae-with-the-potential-ability-for-cyanophycin-synthesis
#19
David R Arahal, Teresa Lucena, Lidia Rodrigo-Torres, María J Pujalte
Strain CECT 5091T , an aerobic, marine, Gram-reaction- and Gram-stain-negative, chemoheterotrophic bacterium was isolated from oysters harvested off the Spanish Mediterranean coast. Analysis of the 16S rRNA gene sequence placed the strain within the genus Ruegeria, in the family Rhodobacteraceae, with 16S rRNA gene similarities of 98.7, 98.7 and 98.4 % to Ruegeria conchae, Ruegeria atlanticaand Ruegeria arenilitoris, respectively. Average nucleotide identities (ANI) and in silico DNA-DNA hybridization (DDH) were determined, comparing the genome sequence of CECT 5091T with those of the type strains of 12 species of the genus Ruegeria: the values obtained were always below the thresholds (95-96 % ANI, 70 % in silico DDH) used to define genomic species, proving that CECT 5091T represents a novel species of the genus Ruegeria...
August 2018: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/29928149/pharmacokinetic-evaluation-of-d-ribose-after-oral-and-intravenous-administration-to-healthy-rabbits
#20
Karem H Alzoubi, Zuhair Bani Ismail, Mohamed K Al-Essa, Osama Y Alshogran, Reem F Abutayeh, Nareman Abu-Baker
Introduction: This study explored D-ribose pharmacokinetics after intravenous (IV) and oral administration to healthy rabbits. Materials and methods: D-ribose was administered once as 420 mg/kg (N=4) or 840 mg/kg (N=6) dose intravenously, or as an oral dose of 420 mg/kg (N=3) or 840 mg/kg (N=3). Serum was obtained at various time points, up to 210 minutes after administration. Urine was also collected after IV administration. Pharmacokinetic parameters were determined from drug concentration-time data using Kinetica software...
2018: Clinical Pharmacology: Advances and Applications
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