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Frontiers in Microbiology

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https://www.readbyqxmd.com/read/28344576/genomic-characterization-of-recent-chicken-anemia-virus-isolates-in-china
#1
Yang Li, Lichun Fang, Shuai Cui, Jiayuan Fu, Xiaohan Li, Huanmin Zhang, Zhizhong Cui, Shuang Chang, Weifeng Shi, Peng Zhao
Chicken anemia virus (CAV) causes diseases in young chickens, which include increased pathogenicity of secondary infectious agents, generalized lymphoid depletion, and immunodepression. In the present study, we have identified 22 CAV strains isolated from several commercial chicken farms in Northern China during 2014-2015. In addition, two CAVs were also isolated from stray mouse and dog feces, respectively. To our knowledge, this is the first report of identification of CAV from mouse and dog feces. Phylogenetic analysis of 121 full-length CAV genome sequences showed that all available CAV could be classified into eight lineages, supported by phylogenetic trees estimated using different methods...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28344575/identification-of-capsid-coat-related-protein-folds-and-their-utility-for-virus-classification
#2
Arshan Nasir, Gustavo Caetano-Anollés
The viral supergroup includes the entire collection of known and unknown viruses that roam our planet and infect life forms. The supergroup is remarkably diverse both in its genetics and morphology and has historically remained difficult to study and classify. The accumulation of protein structure data in the past few years now provides an excellent opportunity to re-examine the classification and evolution of viruses. Here we scan completely sequenced viral proteomes from all genome types and identify protein folds involved in the formation of viral capsids and virion architectures...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28344574/health-associated-niche-inhabitants-as-oral-probiotics-the-case-of-streptococcus-dentisani
#3
Arantxa López-López, Anny Camelo-Castillo, María D Ferrer, Áurea Simon-Soro, Alex Mira
Oral diseases, including dental caries and periodontitis, are among the most prevalent diseases worldwide and develop as a consequence of a microbial dysbiosis. Several bacterial strains are being tested as potential oral health-promoting organisms, but usually they are species isolated from niches other than the site where they must exert its probiotic action, typically from fecal samples. We hypothesize that oral inhabitants associated to health conditions will be more effective than traditional, gut-associated probiotic species in key aspects such as colonization of the oral site where disease takes place or the possession of oral health promoting functions, as well as more practical issues like safety and toxicity, and establishing proper doses for administration...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28344573/submarine-basaltic-glass-colonization-by-the-heterotrophic-fe-ii-oxidizing-and-siderophore-producing-deep-sea-bacterium-pseudomonas-stutzeri-vs-10-the-potential-role-of-basalt-in-enhancing-growth
#4
Lisa A Sudek, Greg Wanger, Alexis S Templeton, Hubert Staudigel, Bradley M Tebo
Phylogenetically and metabolically diverse bacterial communities have been found in association with submarine basaltic glass surfaces. The driving forces behind basalt colonization are for the most part unknown. It remains ambiguous if basalt provides ecological advantages beyond representing a substrate for surface colonization, such as supplying nutrients and/or energy. Pseudomonas stutzeri VS-10, a metabolically versatile bacterium isolated from Vailulu'u Seamount, was used as a model organism to investigate the physiological responses observed when biofilms are established on basaltic glasses...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28344572/gut-colonization-by-methanogenic-archaea-is-associated-with-organic-dairy-consumption-in-children
#5
Jeroen A A van de Pol, Niels van Best, Catherine A Mbakwa, Carel Thijs, Paul H Savelkoul, Ilja C W Arts, Mathias W Hornef, Monique Mommers, John Penders
The gut microbiota represents a complex and diverse ecosystem with a profound impact on human health, promoting immune maturation, and host metabolism as well as colonization resistance. Important members that have often been disregarded are the methanogenic archaea. Methanogenic archaea reduce hydrogen levels via the production of methane, thereby stimulating food fermentation by saccharolytic bacteria. On the other hand, colonization by archaea has been suggested to promote a number of gastrointestinal and metabolic diseases such as colorectal cancer, inflammatory bowel disease, and obesity...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28344571/translation-initiation-factor-eif4e-and-eifiso4e-are-both-required-for-peanut-stripe-virus-infection-in-peanut-arachis-hypogaea-l
#6
Manlin Xu, Hongfeng Xie, Juxiang Wu, Lianhui Xie, Jinguang Yang, Yucheng Chi
Peanut stripe virus (PStV) belongs to the genus Potyvirus and is the most important viral pathogen of cultivated peanut (Arachis hypogaea L.). The eukaryotic translation initiation factor, eIF4E, and its isoform, eIF(iso)4E, play key roles during virus infection in plants, particularly Potyvirus. In the present study, we cloned the eIF4E and eIF(iso)4E homologs in peanut and named these as PeaeIF4E and PeaeIF(iso)4E, respectively. Quantitative real-time PCR (qRT-PCR) analysis showed that these two genes were expressed during all growth periods and in all peanut organs, but were especially abundant in young leaves and roots...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337193/baicalin-protects-mice-from-lethal-infection-by-enterohemorrhagic-escherichia-coli
#7
Yong Zhang, Zhimin Qi, Yan Liu, Wenqi He, Cheng Yang, Quan Wang, Jing Dong, Xuming Deng
Shiga-like toxin-producing Escherichia coli (STEC) O157:H7 poses grave challenges to public health by its ability to cause severe colonic diseases and renal failure in both human and animals. Shiga-like toxins are the major pathogenic factor for some highly virulent E. coli expecially Shiga-like toxin 2. Conventional treatments such as antibiotics can facilitate the release of the toxin thus potentially exacerbate the diseases. Small molecule inhibitors and antibodies capable of neutralizing the toxins are the two major venues for the development of therapeutics against enterohemorrhagic serotype E...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337192/editorial-bioactive-compounds-from-microbes
#8
EDITORIAL
Roberto Mazzoli, Katharina Riedel, Enrica Pessione
No abstract text is available yet for this article.
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337191/toxoplasma-gondii-infection-in-immunocompromised-patients-a-systematic-review-and-meta-analysis
#9
Ze-Dong Wang, Huan-Huan Liu, Zhan-Xi Ma, Hong-Yu Ma, Zhong-Yu Li, Zhi-Bin Yang, Xing-Quan Zhu, Bin Xu, Feng Wei, Quan Liu
Toxoplasma gondii has been suggested as an important opportunistic pathogen in immunocompromised patients. We conducted a global meta-analysis to assess the prevalence and odds ratios (ORs) of T. gondii infection in immunocompromised individuals. Electronic databases were reviewed for T. gondii infection in HIV/AIDS patients, cancer patients, and transplant recipients, and meta-analyses were conducted to calculate overall estimated prevalence and ORs using random or fixed-effects models. Totally, 72 eligible studies were included...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337190/epidemiological-characteristics-and-environmental-risk-factors-of-severe-fever-with-thrombocytopenia-syndrome-in-hubei-province-china-from-2011-to-2016
#10
Tang Wang, Xin-Lou Li, Man Liu, Xiao-Jia Song, Hao Zhang, Yu-Bin Wang, Bao-Pin Tian, Xue-Sen Xing, Shi-Yue Li
Severe fever with thrombocytopenia syndrome (SFTS) is a tick-borne viral disease affecting hundreds of people in China each year. To better understand the epidemiological characteristics and environmental risk factors associated with the incidence of SFTS in Hubei Province, China, we conducted a retrospective epidemiological study and risk assessment of SFTS from 2011 to 2016. Although, the incidence and epidemic areas of SFTS are increasing, the fatality rate has decreased. Elderly farmers are the population most commonly infected with SFTS virus between May and July in the northeast Hubei Province, which seems to be consistent with local agricultural activities and the seasonal abundance of ticks...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337189/elizabethkingia-anophelis-isolated-from-patients-with-multiple-organ-dysfunction-syndrome-and-lower-respiratory-tract-infection-report-of-two-cases-and-literature-review
#11
Shaohua Hu, Tao Jiang, Xia Zhang, Yajun Zhou, Zhengjun Yi, Youxi Wang, Sishou Zhao, Mingxi Wang, Desong Ming, Shicheng Chen
Elizabethkingia anophelis, originally discovered from Anopheles mosquito gut, is an emerging pathogen, especially in immunocompromised patients. We isolated two strains of E. anophelis from two separate patients with multiple organ dysfunction syndrome and lower respiratory tract infection. In this paper, we reviewed the status of E. anophelis infection and its antibiotics resistance from reported cases.
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337188/influence-of-herbicide-triasulfuron-on-soil-microbial-community-in-an-unamended-soil-and-a-soil-amended-with-organic-residues
#12
Eva Pose-Juan, José M Igual, María J Sánchez-Martín, M S Rodríguez-Cruz
The effect of organic amendments and pesticides on a soil microbial community has garnered considerable interest due to the involvement of microorganisms in numerous soil conservation and maintenance reactions. The aim of this work was to assess the influence on a soil microbial community of the simultaneous application of the herbicide triasulfuron at three doses (2, 10, and 50 mg kg(-1)), with an organic amendment [sewage sludge (SS) or green compost (GC)]. Dissipation kinetics, soil microbial biomass, dehydrogenase activity (DHA) and respiration, and the profile of phospholipid fatty acids (PLFAs) extracted from the soil, were determined in unamended (S) soil and amended (S+SS and S+GC) ones...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337187/defining-and-evaluating-a-core-genome-multilocus-sequence-typing-scheme-for-whole-genome-sequence-based-typing-of-klebsiella-pneumoniae
#13
Haijian Zhou, Wenbing Liu, Tian Qin, Chen Liu, Hongyu Ren
At present, the most used methods for Klebsiella pneumoniae subtyping are multilocus sequence typing (MLST) and pulsed-field gel electrophoresis (PFGE). However, the discriminatory power of MLST could not meet the need for distinguishing outbreak and non-outbreak isolates and the PFGE is time-consuming and labor-intensive. A core genome multilocus sequence typing (cgMLST) scheme for whole-genome sequence-based typing of K. pneumoniae was developed for solving the disadvantages of these traditional molecular subtyping methods...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337186/genotypes-associated-with-listeria-monocytogenes-isolates-displaying-impaired-or-enhanced-tolerances-to-cold-salt-acid-or-desiccation-stress
#14
Patricia Hingston, Jessica Chen, Bhavjinder K Dhillon, Chad Laing, Claire Bertelli, Victor Gannon, Taurai Tasara, Kevin Allen, Fiona S L Brinkman, Lisbeth Truelstrup Hansen, Siyun Wang
The human pathogen Listeria monocytogenes is a large concern in the food industry where its continuous detection in food products has caused a string of recalls in North America and Europe. Most recognized for its ability to grow in foods during refrigerated storage, L. monocytogenes can also tolerate several other food-related stresses with some strains possessing higher levels of tolerances than others. The objective of this study was to use a combination of phenotypic analyses and whole genome sequencing to elucidate potential relationships between L...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337185/food-like-growth-conditions-support-production-of-active-vitamin-b12-by-propionibacterium-freudenreichii-2067-without-dmbi-the-lower-ligand-base-or-cobalt-supplementation
#15
Paulina Deptula, Bhawani Chamlagain, Minnamari Edelmann, Panchanit Sangsuwan, Tuula A Nyman, Kirsi Savijoki, Vieno Piironen, Pekka Varmanen
Propionibacterium freudenreichii is a traditional dairy bacterium and a producer of short chain fatty acids (propionic and acetic acids) as well as vitamin B12. In food applications, it is a promising organism for in situ fortification with B12 vitamin since it is generally recognized as safe (GRAS) and it is able to synthesize biologically active form of the vitamin. In the present study, vitamin B12 and pseudovitamin biosynthesis by P. freudenreichii was monitored by UHPLC as a function of growth in food-like conditions using a medium mimicking cheese environment, without cobalt or 5,6-dimethylbenzimidazole (DMBI) supplementation...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337184/the-maternally-inheritable-wolbachia-walbb-induces-refractoriness-to-plasmodium-berghei-in-anopheles-stephensi
#16
Deepak Joshi, Xiaoling Pan, Michael J McFadden, David Bevins, Xiao Liang, Peng Lu, Suzanne Thiem, Zhiyong Xi
The endosymbiont Wolbachia wAlbB induces refractoriness to Plasmodium falciparum in Anopheles stephensi, the primary mosquito vector of human malaria in the Middle East and South Asia. However, it remains unknown whether such refractoriness can be extended to other malaria species. In particular, it was reported that under very specific conditions, wAlbB can enhance Plasmodium infection in some hosts. Here, we measured the impact of wAlbB on the rodent malaria parasite Plasmodium berghei in A. stephensi by comparing the load of oocysts and sporozoites in midguts and salivary glands, respectively, between wAlbB-infected and -uninfected mosquitoes...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337183/are-oligotypes-meaningful-ecological-and-phylogenetic-units-a-case-study-of-microcystis-in-freshwater-lakes
#17
Michelle A Berry, Jeffrey D White, Timothy W Davis, Sunit Jain, Thomas H Johengen, Gregory J Dick, Orlando Sarnelle, Vincent J Denef
Oligotyping is a computational method used to increase the resolution of marker gene microbiome studies. Although oligotyping can distinguish highly similar sequence variants, the resulting units are not necessarily phylogenetically and ecologically informative due to limitations of the selected marker gene. In this perspective, we examine how oligotyping data is interpreted in recent literature, and we illustrate some of the method's constraints with a case study of the harmful bloom-forming cyanobacterium Microcystis...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337182/new-insights-into-the-anti-pathogenic-potential-of-lactococcus-garvieae-against-staphylococcus-aureus-based-on-rna-sequencing-profiling
#18
Pierre Delpech, Etienne Rifa, Graham Ball, Sabine Nidelet, Emeric Dubois, Geneviève Gagne, Marie-Christine Montel, Céline Delbès, Stéphanie Bornes
The bio-preservation potential of Lactococcus garvieae lies in its capacity to inhibit the growth of staphylococci, especially Staphylococcus aureus, in dairy products and in vitro. In vitro, inhibition is modulated by the level of aeration, owing to hydrogen peroxide (H2O2) production by L. garvieae under aeration. The S. aureus response to this inhibition has already been studied. However, the molecular mechanisms of L. garvieae underlying the antagonism against S. aureus have never been explored. This study provides evidence of the presence of another extracellular inhibition effector in vitro...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337181/comparative-genomic-analysis-reveals-ecological-differentiation-in-the-genus-carnobacterium
#19
Christelle F Iskandar, Frédéric Borges, Bernard Taminiau, Georges Daube, Monique Zagorec, Benoît Remenant, Jørgen J Leisner, Martin A Hansen, Søren J Sørensen, Cécile Mangavel, Catherine Cailliez-Grimal, Anne-Marie Revol-Junelles
Lactic acid bacteria (LAB) differ in their ability to colonize food and animal-associated habitats: while some species are specialized and colonize a limited number of habitats, other are generalist and are able to colonize multiple animal-linked habitats. In the current study, Carnobacterium was used as a model genus to elucidate the genetic basis of these colonization differences. Analyses of 16S rRNA gene meta-barcoding data showed that C. maltaromaticum followed by C. divergens are the most prevalent species in foods derived from animals (meat, fish, dairy products), and in the gut...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28337180/the-effect-of-increased-loads-of-dissolved-organic-matter-on-estuarine-microbial-community-composition-and-function
#20
Sachia J Traving, Owen Rowe, Nina M Jakobsen, Helle Sørensen, Julie Dinasquet, Colin A Stedmon, Agneta Andersson, Lasse Riemann
Increased river loads are projected as one of the major consequences of climate change in the northern hemisphere, leading to elevated inputs of riverine dissolved organic matter (DOM) and inorganic nutrients to coastal ecosystems. The objective of this study was to investigate the effects of elevated DOM on a coastal pelagic food web from the coastal northern Baltic Sea, in a 32-day mesocosm experiment. In particular, the study addresses the response of bacterioplankton to differences in character and composition of supplied DOM...
2017: Frontiers in Microbiology
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