Pattern Recognition

Deep learning models for medical image segmentation are usually trained with voxel-wise losses, e.g., cross-entropy loss, focusing on unary supervision without considering inter-voxel relationships. This oversight potentially leads to semantically inconsistent predictions. Here, we propose a contextual similarity loss (CSL) and a structural similarity loss (SSL) to explicitly and efficiently incorporate inter-voxel relationships for improved performance. The CSL promotes consistency in predicted object categories for each image sub-region compared to ground truth...

Machine learning in medical imaging often faces a fundamental dilemma, namely, the small sample size problem. Many recent studies suggest using multi-domain data pooled from different acquisition sites/centers to improve statistical power. However, medical images from different sites cannot be easily shared to build large datasets for model training due to privacy protection reasons. As a promising solution, federated learning, which enables collaborative training of machine learning models based on data from different sites without cross-site data sharing, has attracted considerable attention recently...

Semantic labeling of coronary arterial segments in invasive coronary angiography (ICA) is important for automated assessment and report generation of coronary artery stenosis in computer-aided coronary artery disease (CAD) diagnosis. However, separating and identifying individual coronary arterial segments is challenging because morphological similarities of different branches on the coronary arterial tree and human-to-human variabilities exist. Inspired by the training procedure of interventional cardiologists for interpreting the structure of coronary arteries, we propose an association graph-based graph matching network (AGMN) for coronary arterial semantic labeling...

Missing scans are inevitable in longitudinal studies due to either subject dropouts or failed scans. In this paper, we propose a deep learning framework to predict missing scans from acquired scans, catering to longitudinal infant studies. Prediction of infant brain MRI is challenging owing to the rapid contrast and structural changes particularly during the first year of life. We introduce a trustworthy metamorphic generative adversarial network (MGAN) for translating infant brain MRI from one time-point to another...

Intelligent diagnosis has been widely studied in diagnosing novel corona virus disease (COVID-19). Existing deep models typically do not make full use of the global features such as large areas of ground glass opacities, and the local features such as local bronchiolectasis from the COVID-19 chest CT images, leading to unsatisfying recognition accuracy. To address this challenge, this paper proposes a novel method to diagnose COVID-19 using momentum contrast and knowledge distillation, termed  MCT-KD ...

Fully automated approaches based on convolutional neural networks have shown promising performances on muscle segmentation from magnetic resonance (MR) images, but still rely on an extensive amount of training data to achieve valuable results. Muscle segmentation for pediatric and rare diseases cohorts is therefore still often done manually. Producing dense delineations over 3D volumes remains a time-consuming and tedious task, with significant redundancy between successive slices. In this work, we propose a segmentation method relying on registration-based label propagation, which provides 3D muscle delineations from a limited number of annotated 2D slices...

Adversarial training, especially projected gradient descent (PGD), has proven to be a successful approach for improving robustness against adversarial attacks. After adversarial training, gradients of models with respect to their inputs have a preferential direction. However, the direction of alignment is not mathematically well established, making it difficult to evaluate quantitatively. We propose a novel definition of this direction as the direction of the vector pointing toward the closest point of the support of the closest inaccurate class in decision space...

Supervised machine learning methods have been widely developed for segmentation tasks in recent years. However, the quality of labels has high impact on the predictive performance of these algorithms. This issue is particularly acute in the medical image domain, where both the cost of annotation and the inter-observer variability are high. Different human experts contribute estimates of the "actual" segmentation labels in a typical label acquisition process, influenced by their personal biases and competency levels...

Deep convolutional neural networks (CNNs) are broadly considered to be state-of-the-art generic end-to-end image classification systems. However, they are known to underperform when training data are limited and thus require data augmentation strategies that render the method computationally expensive and not always effective. Rather than using a data augmentation strategy to encode invariances as typically done in machine learning, here we propose to mathematically augment a nearest subspace classification model in sliced-Wasserstein space by exploiting certain mathematical properties of the Radon Cumulative Distribution Transform (R-CDT), a recently introduced image transform...

Unfortunately, the COVID-19 outbreak has been accompanied by the spread of rumors and depressing news. Herein, we develop a dynamic nested optimal control model of COVID-19 and its rumor outbreaks. The model aims to curb the epidemics by reducing the number of individuals infected with COVID-19 and reducing the number of rumor-spreaders while minimizing the cost associated with the control interventions. We use the modified approximation Karush-Kuhn-Tucker conditions with the Hamiltonian function to simplify the model before solving it using a genetic algorithm...

The outbreak of the COVID-19 coronavirus epidemic has promoted the development of masked face recognition (MFR). Nevertheless, the performance of regular face recognition is severely compromised when the MFR accuracy is blindly pursued. More facts indicate that MFR should be regarded as a mask bias of face recognition rather than an independent task. To mitigate mask bias, we propose a novel Progressive Learning Loss (PLFace) that achieves a progressive training strategy for deep face recognition to learn balanced performance for masked/mask-free faces recognition based on margin losses...

Information in digital mammogram images has been shown to be associated with the risk of developing breast cancer. Longitudinal breast cancer screening mammogram examinations may carry spatiotemporal information that can enhance breast cancer risk prediction. No deep learning models have been designed to capture such spatiotemporal information over multiple examinations to predict the risk. In this study, we propose a novel deep learning structure, LRP-NET, to capture the spatiotemporal changes of breast tissue over multiple negative/benign screening mammogram examinations to predict near-term breast cancer risk in a case-control setting...

In early 2020, the global spread of the COVID-19 has presented the world with a serious health crisis. Due to the large number of infected patients, automatic segmentation of lung infections using computed tomography (CT) images has great potential to enhance traditional medical strategies. However, the segmentation of infected regions in CT slices still faces many challenges. Specially, the most core problem is the high variability of infection characteristics and the low contrast between the infected and the normal regions...

Contact tracking plays an important role in the epidemiological investigation of COVID-19, which can effectively reduce the spread of the epidemic. As an excellent alternative method for contact tracking, mobile phone location-based methods are widely used for locating and tracking contacts. However, current inaccurate positioning algorithms that are widely used in contact tracking lead to the inaccurate follow-up of contacts. Aiming to achieve accurate contact tracking for the COVID-19 contact group, we extend the analysis of the GPS data to combine GPS data with video surveillance data and address a novel task named group activity trajectory recovery...

The devastating outbreak of Coronavirus Disease (COVID-19) cases in early 2020 led the world to face health crises. Subsequently, the exponential reproduction rate of COVID-19 disease can only be reduced by early diagnosis of COVID-19 infection cases correctly. The initial research findings reported that radiological examinations using CT and CXR modality have successfully reduced false negatives by RT-PCR test. This research study aims to develop an explainable diagnosis system for the detection and infection region quantification of COVID-19 disease...

Objective: To develop and validate a novel convolutional neural network (CNN) termed "Super U-Net" for medical image segmentation. Methods: Super U-Net integrates a dynamic receptive field module and a fusion upsampling module into the classical U-Net architecture. The model was developed and tested to segment retinal vessels, gastrointestinal (GI) polyps, skin lesions on several image types (i.e., fundus images, endoscopic images, dermoscopic images). We also trained and tested the traditional U-Net architecture, seven U-Net variants, and two non-U-Net segmentation architectures...

This study presents the Auditory Cortex ResNet (AUCO ResNet), it is a biologically inspired deep neural network especially designed for sound classification and more specifically for Covid-19 recognition from audio tracks of coughs and breaths. Differently from other approaches, it can be trained end-to-end thus optimizing (with gradient descent) all the modules of the learning algorithm: mel-like filter design, feature extraction, feature selection, dimensionality reduction and prediction. This neural network includes three attention mechanisms namely the squeeze and excitation mechanism, the convolutional block attention module, and the novel sinusoidal learnable attention...

The motivation for this research is to develop an approach that reliably captures the disease dynamics of COVID-19 for an entire population in order to identify the key events driving change in the epidemic through accurate estimation of daily COVID-19 cases. This has been achieved through the new CP-ABM approach which uniquely incorporates C hange P oint detection into an A gent B ased M odel taking advantage of genetic algorithms for calibration and an efficient infection centric procedure for computational efficiency...

Covid-19, what a strange, unpredictable mutated virus. It has baffled many scientists, as no firm rule has yet been reached to predict the effect that the virus can inflict on people if they are infected with it. Recently, many researches have been introduced for diagnosing Covid-19; however, none of them pay attention to predict the effect of the virus on the person's body if the infection occurs but before the infection really takes place. Predicting the extent to which people will be affected if they are infected with the virus allows for some drastic precautions to be taken for those who will suffer from serious complications, while allowing some freedom for those who expect not to be affected badly...

Accurate segmentation of the brain into gray matter, white matter, and cerebrospinal fluid using magnetic resonance (MR) imaging is critical for visualization and quantification of brain anatomy. Compared to 3T MR images, 7T MR images exhibit higher tissue contrast that is contributive to accurate tissue delineation for training segmentation models. In this paper, we propose a cascaded nested network (CaNes-Net) for segmentation of 3T brain MR images, trained by tissue labels delineated from the corresponding 7T images...