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GSCALite: a web server for gene set cancer analysis.
Bioinformatics 2018 November 2
Summary: The availability of cancer genomic data makes it possible to analyze genes related to cancer. Cancer is usually the result of a set of genes and the signal of a single gene could be covered by background noise. Here, we present a web server named Gene Set Cancer Analysis (GSCALite) to analyze a set of genes in cancers with the following functional modules. (i) Differential expression in tumor versus normal, and the survival analysis; (ii) Genomic variations and their survival analysis; (iii) Gene expression associated cancer pathway activity; (iv) miRNA regulatory network for genes; (v) Drug sensitivity for genes; (vi) Normal tissue expression and eQTL for genes. GSCALite is a user-friendly web server for dynamic analysis and visualization of gene set in cancer and drug sensitivity correlation, which will be of broad utilities to cancer researchers.
Availability and implementation: GSCALite is available on https://bioinfo.life.hust.edu.cn/web/GSCALite/.
Supplementary information: Supplementary data are available at Bioinformatics online.
Availability and implementation: GSCALite is available on https://bioinfo.life.hust.edu.cn/web/GSCALite/.
Supplementary information: Supplementary data are available at Bioinformatics online.
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