We have located links that may give you full text access.
TarHunter, a tool for predicting conserved microRNA targets and target mimics in plants.
Bioinformatics 2018 May 2
Summary: In plants, the targets of deeply conserved microRNAs (miRNAs) were comprehensively studied. Evidence is emerging that targets of less conserved miRNAs, endogenous target mimics (eTM) and non-canonical targets play functional roles. Existing plant miRNA prediction tools lack a cross-species conservation filter and eTM prediction function. We developed a tool named TarHunter that features a strict cross-species conservation filter and capability of predicting eTMs. TarHunter has higher recall or precision rate as compared with other tools, and the conservation filter effectively increases prediction precision. TarHunter prediction combined with degradome analysis uncovered previously neglected miRNA targets including non-canonical target sites from various plant species, which are available at the TarHunter website (https://tarhunter.genetics.ac.cn/).
Availability and implementation: The code of TarHunter is available on Github (https://github.com/XMaBio).
Contact: [email protected].
Supplementary information: Supplementary data are available at Bioinformatics online.
Availability and implementation: The code of TarHunter is available on Github (https://github.com/XMaBio).
Contact: [email protected].
Supplementary information: Supplementary data are available at Bioinformatics online.
Full text links
Related Resources
Get seemless 1-tap access through your institution/university
For the best experience, use the Read mobile app
All material on this website is protected by copyright, Copyright © 1994-2024 by WebMD LLC.
This website also contains material copyrighted by 3rd parties.
By using this service, you agree to our terms of use and privacy policy.
Your Privacy Choices
You can now claim free CME credits for this literature searchClaim now
Get seemless 1-tap access through your institution/university
For the best experience, use the Read mobile app