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Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
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A Method for Cross-Species Visualization and Analysis of RNA-Sequence Data.

Stephen A Ramsey
Methods in Molecular Biology 2018
In this methods article, I describe a computational workflow for cross-species visualization and comparison of mRNA-seq transcriptome profiling data. The workflow is based on gene set variation analysis (GSVA) and is illustrated using commands in the R programming language. I provide a complete step-by-step procedure for the workflow using mRNA-seq data sets from dog and human bladder cancer as an example.

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