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KMC 3: counting and manipulating k-mer statistics.

Marek Kokot, Maciej Dlugosz, Sebastian Deorowicz
Bioinformatics 2017 September 2
Summary: Counting all k -mers in a given dataset is a standard procedure in many bioinformatics applications. We introduce KMC3, a significant improvement of the former KMC2 algorithm together with KMC tools for manipulating k -mer databases. Usefulness of the tools is shown on a few real problems.

Availability and implementation: Program is freely available at https://sun.aei.polsl.pl/REFRESH/kmc .

Contact: [email protected].

Supplementary information: Supplementary data are available at Bioinformatics online.

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