JOURNAL ARTICLE
RESEARCH SUPPORT, NON-U.S. GOV'T
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FRED 2: an immunoinformatics framework for Python.

Bioinformatics 2016 July 2
UNLABELLED: Immunoinformatics approaches are widely used in a variety of applications from basic immunological to applied biomedical research. Complex data integration is inevitable in immunological research and usually requires comprehensive pipelines including multiple tools and data sources. Non-standard input and output formats of immunoinformatics tools make the development of such applications difficult. Here we present FRED 2, an open-source immunoinformatics framework offering easy and unified access to methods for epitope prediction and other immunoinformatics applications. FRED 2 is implemented in Python and designed to be extendable and flexible to allow rapid prototyping of complex applications.

AVAILABILITY AND IMPLEMENTATION: FRED 2 is available at https://fred-2.github.io

CONTACT: [email protected]

SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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