keyword
https://read.qxmd.com/read/38621310/%C3%AE-galactosidase-triggered-in-situ-synthesis-of-yellow-emitting-silicon-nanoparticle-and-its-application-in-visual-detection-of-e-coli-o157-h7-and-drug-susceptibility-test
#1
JOURNAL ARTICLE
Dan Zhao, Yan Jiao, Changpeng Zhang, Xincai Xiao
The sensitive detection of foodborne pathogenic and rapid antibiotic susceptibility testing (AST) is of great significance. This paper reports the enzyme-triggered in situ synthesis of yellow emitting silicon nanoparticles (SiNPs) and the detection of Escherichia coli (E. coli) O157:H7 in food samples and the rapid AST. The rapid counting of E. coli O157:H7 has been achieved through direct visual observation, equipment detection, and smartphone digitalization. A simple detection platform based on smartphone senses and cotton swabs has been established...
April 10, 2024: Food Chemistry
https://read.qxmd.com/read/38621258/bone-proteomics-method-optimization-for-forensic-investigations
#2
JOURNAL ARTICLE
Luke Gent, Maria Elena Chiappetta, Stuart Hesketh, Pawel Palmowski, Andrew Porter, Andrea Bonicelli, Edward C Schwalbe, Noemi Procopio
The application of proteomic analysis to forensic skeletal remains has gained significant interest in improving biological and chronological estimations in medico-legal investigations. To enhance the applicability of these analyses to forensic casework, it is crucial to maximize throughput and proteome recovery while minimizing interoperator variability and laboratory-induced post-translational protein modifications (PTMs). This work compared different workflows for extracting, purifying, and analyzing bone proteins using liquid chromatography with tandem mass spectrometry (LC-MS)/MS including an in-StageTip protocol previously optimized for forensic applications and two protocols using novel suspension-trap technology (S-Trap) and different lysis solutions...
April 15, 2024: Journal of Proteome Research
https://read.qxmd.com/read/38621166/efficacy-of-random-forest-models-in-predicting-multidrug-resistant-gram-negative-bacterial-nosocomial-infections-compared-to-traditional-logistic-regression-models
#3
JOURNAL ARTICLE
Jinglan Deng, Yongchun Ge, Lingli Yu, Qiuxia Zuo, Kexin Zhao, Maimaiti Adila, Xiao Wang, Ke Niu, Ping Tian
This study evaluates whether random forest (RF) models are as effective as traditional Logistic Regression (LR) models in predicting multidrug-resistant Gram-negative bacterial nosocomial infections. Data were collected from 541 patients with hospital-acquired Gram-negative bacterial infections at two tertiary-level hospitals in Urumqi, Xinjiang, China, from August 2022 to November 2023. Relevant literature informed the selection of significant predictors based on patients' pre-infection clinical information and medication history...
April 15, 2024: Microbial Drug Resistance: MDR: Mechanisms, Epidemiology, and Disease
https://read.qxmd.com/read/38621162/diagnostic-accuracy-of-blind-bronchial-sample-testing-by-biofire-pneumonia-plus-panel-in-pediatric-intensive-care-unit-patients-and-its-impact-in-early-adaptation-of-antimicrobial-therapy-a-prospective-observational-study
#4
JOURNAL ARTICLE
Guillaume Geslain, Aurélie Cointe, Jérôme Naudin, Stéphane Dauger, Nora Poey, Justine Pages, Enora Le Roux, Stéphane Bonacorsi
BACKGROUND: Community-acquired and nosocomial lower-respiratory-tract infections in critically ill pediatric patients require early appropriate antibiotic therapy to optimize outcomes. Using blind bronchial samples, we assessed the diagnostic performance of the rapid-multiplex polymerase chain reaction (PCR) assay BioFire Pneumonia plus Panel vs. reference standard culturing with antimicrobial susceptibility testing. METHODS: For this prospective observational study in a single pediatric intensive care unit, we included consecutive patients younger than 18 years admitted for suspected community-, hospital- or ventilator-associated pneumonia in 2021-2022...
April 8, 2024: Pediatric Infectious Disease Journal
https://read.qxmd.com/read/38621146/proximity-guaranteed-dna-machine-for-accurate-identification-of-breast-cancer-extracellular-vesicles
#5
JOURNAL ARTICLE
Shuang Yang, Liang Zhou, Zhikai Fang, Ying Wang, Guozhang Zhou, Xi Jin, Ya Cao, Jing Zhao
Breast cancer is one of the most diagnosed cancers worldwide. Precise diagnosis and subtyping have important significance for targeted therapy and prognosis prediction of breast cancer. Herein, we design a proximity-guaranteed DNA machine for accurate identification of breast cancer extracellular vesicles (EVs), which is beneficial to explore the subtype features of breast cancer. In our design, two proximity probes are located close on the same EV through specific recognition of coexisting surface biomarkers, thus being ligated with the help of click chemistry...
April 15, 2024: ACS Sensors
https://read.qxmd.com/read/38621141/an-inherited-life-threatening-arrhythmia-model-established-by-screening-randomly-mutagenized-mice
#6
JOURNAL ARTICLE
Yuta Okabe, Nobuyuki Murakoshi, Nagomi Kurebayashi, Hana Inoue, Yoko Ito, Takashi Murayama, Chika Miyoshi, Hiromasa Funato, Koichiro Ishii, Dongzhu Xu, Kazuko Tajiri, Rujie Qin, Kazuhiro Aonuma, Yoshiko Murakata, Zonghu Song, Shigeharu Wakana, Utako Yokoyama, Takashi Sakurai, Kazutaka Aonuma, Masaki Ieda, Masashi Yanagisawa
Inherited arrhythmia syndromes (IASs) can cause life-threatening arrhythmias and are responsible for a significant proportion of sudden cardiac deaths (SCDs). Despite progress in the development of devices to prevent SCDs, the precise molecular mechanisms that induce detrimental arrhythmias remain to be fully investigated, and more effective therapies are desirable. In the present study, we screened a large-scale randomly mutagenized mouse library by electrocardiography to establish a disease model of IASs and consequently found one pedigree that exhibited spontaneous ventricular arrhythmias (VAs) followed by SCD within 1 y after birth...
April 23, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38621137/threonine-phosphorylation-of-stat1-restricts-interferon-signaling-and-promotes-innate-inflammatory-responses
#7
JOURNAL ARTICLE
Hozaifa Metwally, Maha M Elbrashy, Tatsuhiko Ozawa, Kazuki Okuyama, Jason T White, Janyerkye Tulyeu, Jonas Nørskov Søndergaard, James Badger Wing, Arisa Muratsu, Hisatake Matsumoto, Masahito Ikawa, Hiroyuki Kishi, Ichiro Taniuchi, Tadamitsu Kishimoto
Since its discovery over three decades ago, signal transducer and activator of transcription 1 (STAT1) has been extensively studied as a central mediator for interferons (IFNs) signaling and antiviral defense. Here, using genetic and biochemical assays, we unveil Thr748 as a conserved IFN-independent phosphorylation switch in Stat1, which restricts IFN signaling and promotes innate inflammatory responses following the recognition of the bacterial-derived toxin lipopolysaccharide (LPS). Genetically engineered mice expressing phospho-deficient threonine748-to-alanine (T748A) mutant Stat1 are resistant to LPS-induced lethality...
April 23, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38621130/substrate-geometry-affects-population-dynamics-in-a-bacterial-biofilm
#8
JOURNAL ARTICLE
Witold Postek, Klaudia Staśkiewicz, Elin Lilja, Bartłomiej Wacław
Biofilms inhabit a range of environments, such as dental plaques or soil micropores, often characterized by noneven surfaces. However, the impact of surface irregularities on the population dynamics of biofilms remains elusive, as most experiments are conducted on flat surfaces. Here, we show that the shape of the surface on which a biofilm grows influences genetic drift and selection within the biofilm. We culture E scherichia coli biofilms in microwells with a corrugated bottom surface and observe the emergence of clonal sectors whose size corresponds to that of the corrugations, despite no physical barrier separating different areas of the biofilm...
April 23, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38621126/impacts-of-fire-and-prospects-for-recovery-in-a-tropical-peat-forest-ecosystem
#9
JOURNAL ARTICLE
Mark E Harrison, Nicolas J Deere, Muhammad Ali Imron, Darmae Nasir, Adul, Hastin Ambar Asti, Joana Aragay Soler, Nicholas C Boyd, Susan M Cheyne, Sarah A Collins, Laura J D'Arcy, Wendy M Erb, Hannah Green, William Healy, Hendri, Brendan Holly, Peter R Houlihan, Simon J Husson, Iwan, Karen A Jeffers, Ici P Kulu, Kitso Kusin, Nicholas C Marchant, Helen C Morrogh-Bernard, Susan E Page, Ari Purwanto, Bernat Ripoll Capilla, Oscar Rodriguez de Rivera Ortega, Santiano, Katie L Spencer, Jito Sugardjito, Jatna Supriatna, Sara A Thornton, F J Frank van Veen, Yulintine, Matthew J Struebig
Uncontrolled fires place considerable burdens on forest ecosystems, compromising our ability to meet conservation and restoration goals. A poor understanding of the impacts of fire on ecosystems and their biodiversity exacerbates this challenge, particularly in tropical regions where few studies have applied consistent analytical techniques to examine a broad range of ecological impacts over multiyear time frames. We compiled 16 y of data on ecosystem properties (17 variables) and biodiversity (21 variables) from a tropical peatland in Indonesia to assess fire impacts and infer the potential for recovery...
April 23, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38621110/all-solid-highly-sensitive-fiber-tip-magnetic-field-sensor-based-on-a-fabry-perot-interferometer-with-a-breakpoint-structure
#10
JOURNAL ARTICLE
Yingfang Zhang, Xingchao Ma, Ben Xu, Jianqing Li, Huifang Chen, Juan Kang, Chunliu Zhao, Shangzhong Jin
An all-solid fiber-tip Fabry-Perot interferometer (FPI) coated with a nickel film is proposed and experimentally verified for magnetic field sensing with high sensitivity. It is fabricated by splicing a segment of a thin-wall capillary tube to a standard single-mode fiber (SMF), then inserting a tiny segment of fiber with a smaller diameter into the capillary tube, and creating an ultra-narrow air-gap at the SMF end to form an FPI. When the device is exposed to magnetic field, the capillary tube is strained due to the magnetostrictive effect of the nickel film coated on its outer surface...
April 15, 2024: Optics Letters
https://read.qxmd.com/read/38621107/large-optoelectronic-chromatic-dispersion-in-pn-type-silicon-photodiodes-and-photovoltaic-cells
#11
JOURNAL ARTICLE
Sapna Mudgal, Pawan K Dubey, Ziv Glasser, Shmuel Sternklar
Optoelectronic chromatic dispersion (OED) is a significant source of effective chromatic dispersion in photodiodes. We present an experimental and theoretical study of OED in PN-type Si photodiodes and photovoltaic cells and report on a very large effective chromatic dispersion in these devices. As measured with the modulation phase-shift technique at a frequency of 4 kHz for these slow devices, the OED spectral sensitivity for a commercial Si photodiode is approx. 0.02 deg/nm in the 720-850 nm wavelength band and increases to 0...
April 15, 2024: Optics Letters
https://read.qxmd.com/read/38621104/tt-type-resonator-based-differential-photoacoustic-spectroscopy-for-trace-gas-detection
#12
JOURNAL ARTICLE
Fupeng Wang, Liyan Fu, Jianguo Zhang, Ze Han, Shuo Pang, Qingsheng Xue, Diansheng Cao, Qian Li, Qiang Wang
A novel TT-type resonator was proposed for the first time, to our knowledge, to realize differential photoacoustic (PA) detection for trace gas measurement. The special design of the TT-type resonator allows us to install the microphone at the resonant center of the acoustic field to maximize the use of the absorption-induced PA signal. To meet the requirement of low gas consumption and easy integration, the TT-type resonator-based PA cell was fabricated as a fiber-coupled module with an inner volume of only 1...
April 15, 2024: Optics Letters
https://read.qxmd.com/read/38621090/contrast-enhanced-phase-resolved-second-harmonic-generation-microscopy
#13
JOURNAL ARTICLE
Zhanshan Wang, Canyu Hong, Zeyuan Sun, Shuang Wu, Bokai Liang, Xidong Duan, Wei-Tao Liu, Shiwei Wu
The characterization of inverted structures (crystallographic, ferroelectric, or magnetic domains) is crucial in the development and application of novel multi-state devices. However, determining these inverted structures needs a sensitive probe capable of revealing their phase correlation. Here a contrast-enhanced phase-resolved second harmonic generation (SHG) microscopy is presented, which utilizes a phase-tunable Soleil-Babinet compensator and the interference between the SHG fields from the inverted structures and a homogeneous reference...
April 15, 2024: Optics Letters
https://read.qxmd.com/read/38621088/imaging-focused-laser-differential-interferometry
#14
JOURNAL ARTICLE
Andrew W Marsh, Alice N Kramer, Kevin N Maranto, Yi Chen Mazumdar
Focused laser differential interferometry (FLDI) is an important diagnostic for measuring density fluctuations in high-speed flows. Currently, however, high dynamic range FLDI is limited to photodiode measurements. In order to spatially resolve multiple locations within complex flows, we present a novel, to the best of our knowledge, refractive-optic imaging FLDI concept that not only produces two-dimensional images without scanning but also reduces the measurement noise floor of those images. To demonstrate this concept, a 33 × 33 grid of FLDI points is first generated using a microlens array...
April 15, 2024: Optics Letters
https://read.qxmd.com/read/38621086/geometry-optimization-of-cantilever-based-optical-microphones
#15
JOURNAL ARTICLE
Shen Tian, Pengbo Chen, Mingqi Jiao, Kaijun Mu, Yang Gao, Yingying Qiao, Lei Li, Chongxin Shan
The introduction of cantilever-based fiber-optic microphones (FOMs) has proven to be effective in acoustic sensing. Further improvements in cantilevers face two key constraints: the challenge of achieving minimal sizes with sufficient reflective area and the trade-off between sensitivity and response bandwidth. Herein, we present a geometry optimization framework for a cantilever-based FOM that addresses this issue. Employing drumstick-shaped cantilevers housed within a Fabry-Perot (F-P) interferometric structure, we showcase a heightened sensitivity of 302...
April 15, 2024: Optics Letters
https://read.qxmd.com/read/38621075/large-and-tunable-optoelectronic-chromatic-dispersion-in-pin-type-photodiodes
#16
JOURNAL ARTICLE
Ayuushi Dutta, Egor Liokumovitch, Ziv Glaser, Shmuel Sternklar
It is known that PN-type photodiodes possess high optoelectronic chromatic dispersion (OED). Here we present a theoretical and experimental study of OED in PIN-type photodiodes. Applying the modulation phase-shift technique, a Ge PIN photodiode exhibits ∼0.5 deg/nm phase-shift sensitivity at 10 MHz modulation, corresponding to a dispersion of 1.4 ×109 ps/( n m × k m ), many orders of magnitude larger than high-dispersion optical materials such as chalcogenide glass. A striking feature of the PIN device is the ability to tune the amount and sign of the OED through the bias voltage...
April 15, 2024: Optics Letters
https://read.qxmd.com/read/38621074/plasmonic-nanosensor-and-pressure-induced-transparency-based-on-coupled-resonator-in-a-nanoscale-system
#17
JOURNAL ARTICLE
Zhao Chen, Baixu Zhu, Xinxin Ma, Shijie Zhang, Linhao Li, Tong Li, Yilin Wang, Zhi-Ling Hou
Plasmonic nanosensors and the dynamic control of light fields are of the utmost significance in the field of micro- and nano-optics. Here, our study successfully demonstrates a plasmonic nanosensor in a compact coupled resonator system and obtains the pressure-induced transparency phenomenon for the first time to our knowledge. The proposed structure consists of a groove and slot cavity coupled in the metal-insulator-metal waveguide, whose mechanical and optical characteristics are investigated in detail using the finite element method...
April 15, 2024: Optics Letters
https://read.qxmd.com/read/38621062/free-spectral-range-measurement-based-on-a-multi-longitudinal-mode-laser-self-mixing-ellipse-fitting-degree-detection-technique
#18
JOURNAL ARTICLE
Zhen Huang, Haozhong Xu, Dongyu Li
A method by detecting the ellipse fitting degree of the trajectory equation formed by two self-mixing (SM) signals in the multi-longitudinal mode laser SM system with a Wollaston prism is presented to test the free spectral range (FSR) of the laser. By utilizing the orthogonal vector and phase-shift characteristics between adjacent longitudinal modes, the fluctuations in multi-mode SM effects caused by changes in the external cavity length are transformed into alterations in the trajectory composed of two orthogonal SM signals...
April 15, 2024: Optics Letters
https://read.qxmd.com/read/38621054/magnetically-tunable-brewster-angle-in-uniaxial-magneto-optical-metamaterials-for-advanced-integration-of-high-resolution-sensing-devices
#19
JOURNAL ARTICLE
S A Sarmiento, E Moncada-Villa, J R Mejía-Salazar
In this Letter, we introduce a concept to produce high-resolution, highly integrable biosensing devices. Our idea exploits the highly absorbing modes in multilayered metamaterials to maximize the transverse magneto-optical Kerr effect (TMOKE). Results are discussed in the context of dielectric uniaxial ( ε eff,∥ ε eff,⊥ >0) and hyperbolic metamaterial ( ε eff,∥ ε eff,⊥ <0) regimes. For applications in gas sensing, we obtained sensitivities of S = 46...
April 15, 2024: Optics Letters
https://read.qxmd.com/read/38621050/deep-learning-empowers-photothermal-microscopy-with-super-resolution-capabilities
#20
JOURNAL ARTICLE
Yonghui Wang, Zhuoyan Yue, Fei Wang, Peng Song, Junyan Liu
In the past two decades, photothermal microscopy (PTM) has achieved sensitivity at the level of a single particle or molecule and has found applications in the fields of material science and biology. PTM is a far-field imaging method; its resolution is restricted by the diffraction limits. In our previous work, the modulated difference PTM (MDPTM) was proposed to improve the lateral resolution, but its resolution improvement was seriously constrained by information loss and artifacts. In this Letter, a deep learning approach of the cycle generative adversarial network (Cycle GAN) is employed for further improving the resolution of PTM, called DMDPTM...
April 15, 2024: Optics Letters
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