keyword
https://read.qxmd.com/read/38256092/network-analysis-of-metabolome-and-transcriptome-revealed-regulation-of-different-nitrogen-concentrations-on-hybrid-poplar-cambium-development
#1
JOURNAL ARTICLE
Shuang Zhang, Lina Cao, Ruhui Chang, Heng Zhang, Jiajie Yu, Chunming Li, Guanjun Liu, Junxin Yan, Zhiru Xu
Secondary development is a key biological characteristic of woody plants and the basis of wood formation. Exogenous nitrogen can affect the secondary growth of poplar, and some regulatory mechanisms have been found in the secondary xylem. However, the effect of nitrogen on cambium has not been reported. Herein, we investigated the effects of different nitrogen concentrations on cambium development using combined transcriptome and metabolome analysis. The results show that, compared with 1 mM NH4 NO3 (M), the layers of hybrid poplar cambium cells decreased under the 0...
January 13, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38176254/a-sensitive-coumarin-fluorescence-sensor-designed-for-isoprene-detection-and-imaging-research-in-plants
#2
JOURNAL ARTICLE
Zhixin Liu, Mengyuan Wang, Meng Wu, Xueling Yu, Qijun Sun, Chenglin Su, Yining Sun, Shuang Cao, Na Niu, Ligang Chen
The release of isoprene by plants is considered to be an adaptation to the environment. Herein, a highly selective coumarin fluorescent probe (DMIC) was designed for detecting isoprene. When isoprene came into contact with the maleimide of DMIC, an electrophilic addition process took place. The powerful push-pull effect of DMIC was disrupted. Simultaneously, intramolecular charge transfer was initiated. This enabled DMIC to achieve rapid detection of isoprene within 5 min. Furthermore, excellent linearity was observed in the concentration range of 1-560 ppm (R2  = 0...
January 2, 2024: Biosensors & Bioelectronics
https://read.qxmd.com/read/38061180/evaluation-of-a-biomarker-no-dynamics-in-inflammatory-zebrafish-and-periodontitis-saliva-samples-via-a-fast-response-and-sensitive-fluorescent-probe
#3
JOURNAL ARTICLE
Yibin Zhang, Shaocai Wang, Yu Sun, Hanbo Xu, Zihan Xu, Xin Liang, Jianguang Yang, Weiyi Song, Minghui Chen, Mingxi Fang
Many pathological processes include nitric oxide (NO), a signaling transduction molecule. Tumors, cardiovascular, cerebrovascular, neurodegenerative, and other illnesses are linked to abnormal NO levels. Thus, evaluating NO levels in vitro and in vivo is crucial for studying chemical biology process of associated disorders. This work devised and manufactured a coumarin-based fluorescent probe ZPS-NO to detect nitric oxide (NO). The reaction between ZPS-NO and NO produced a highly selective and sensitive optical response that caused a powerful fluorescence "turn-on" effect with a ultra-low NO detection limit of 14...
December 3, 2023: Bioorganic Chemistry
https://read.qxmd.com/read/37761965/integrated-transcriptome-and-metabolome-analysis-of-salinity-tolerance-in-response-to-foliar-application-of-%C3%AE-alanine-in-cotton-seedlings
#4
JOURNAL ARTICLE
Wei Ren, Li Chen
Salinity is amongst the serious abiotic stresses cotton plants face, impairing crop productivity. Foliar application of β-alanine is employed to improve salt tolerance in various crops, but the exact mechanism behind it is not yet completely understood. An advanced line SDS-01 of upland cotton Gossypium hirsutum L. was utilized to determine its salt tolerance. Foliar treatment with the β-alanine solution at different concentrations was applied to the seedlings stressed with 0.8% NaCl solution. On the 10th day of treatment, samples were collected for transcriptome and metabolome analyses...
September 20, 2023: Genes
https://read.qxmd.com/read/37729857/metabolic-pathways-modulated-by-coumarin-to-inhibit-seed-germination-and-early-seedling-growth-in-eleusine-indica
#5
JOURNAL ARTICLE
Tai-Jie Zhang, Zhao Ma, Hong-Ju Ma, Xing-Shan Tian, Wen-Lei Guo, Chun Zhang
Coumarin is an allelochemical that is widely present in the plant kingdom and has great potential for weed control. However, its mechanisms of action remain largely unknown. This study employed metabolomic and transcriptomic analyses along with evaluations of amino acid profiles and related physiological indicators to investigate how coumarin inhibits the germination and seedling growth of Eleusine indica by modifying metabolic pathways. At 72 h of germination at 50 and 100 mg L-1 coumarin, E...
September 13, 2023: Plant Physiology and Biochemistry: PPB
https://read.qxmd.com/read/37723451/genome-sequencing-based-transcriptomic-analysis-reveals-novel-genes-in-peucedanum-praeruptorum
#6
JOURNAL ARTICLE
Cheng Song, Yingyu Zhang, Yunpeng Zhang, Shanyong Yi, Haoyu Pan, Ranran Liao, Yuanyuan Wang, Bangxing Han
BACKGROUND: Peucedanum praeruptorum Dunn, a traditional Chinese herbal medicine, contains coumarin and volatile oil components that have clinical application value. However, early bolting often occurs in the medicinal materials of Apiaceae plants. The rhizomes of the medicinal parts are gradually lignified after bolting, resulting in a sharp decrease in the content of coumarins. At present, the link between coumarin biosynthesis and early bolting in P. praeruptorum has not been elucidated...
September 18, 2023: BMC genomic data
https://read.qxmd.com/read/37640193/biological-evaluation-of-the-novel-3-3-4-nitrophenyl-methylene-bis-4-hydroxy-2h-chromen-2-one-derivative-as-potential-anticancer-agents-via-the-selective-induction-of-reactive-oxygen-species-mediated-apoptosis
#7
JOURNAL ARTICLE
Sayanta Dutta, Sushweta Mahalanobish, Sukanya Saha, Mullicka Mandal, Sanchari Begam, Pritam Sadhukhan, Sumit Ghosh, Goutam Brahmachari, Parames C Sil
Selective initiation of programmed cell death in cancer cells than normal cells is reflected as an attractive chemotherapeutic strategy. In the current study, a series of synthetic bis-coumarin derivatives were synthesized possessing reactive oxygen species (ROS) modulating functional groups and examined in four cancerous and two normal cell lines for their cytotoxic ability using MTT assay. Among these compounds, 3 l emerged as the most promising derivative in persuading apoptosis in human renal carcinoma cells (SKRC-45) among diverse cancer cell lines...
August 26, 2023: Cellular Signalling
https://read.qxmd.com/read/37373174/synthesis-and-biological-properties-of-pyranocoumarin-derivatives-as-potent-anti-inflammatory-agents
#8
JOURNAL ARTICLE
Su Ji Min, Heesu Lee, Myoung-Sook Shin, Jae Wook Lee
This study aimed to synthesize 23 coumarin derivatives and analyze their anti-inflammatory effects on lipopolysaccharide (LPS)-induced inflammation in RAW264.7 macrophages. A cytotoxicity test performed on LPS-induced RAW264.7 macrophages revealed that none of the 23 coumarin derivatives were cytotoxic. Among the 23 coumarin derivatives, coumarin derivative 2 showed the highest anti-inflammatory activity by significantly reducing nitric oxide production in a concentration-dependent manner. Coumarin derivative 2 inhibited the production of proinflammatory cytokines, including tumor necrosis factor alpha and interleukin-6, and decreased the expression level of each mRNA...
June 12, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/36985607/quorum-quenchers-from-reynoutria-japonica-in-the-battle-against-methicillin-resistant-staphylococcus-aureus-mrsa
#9
JOURNAL ARTICLE
Maliha Fatima, Arshia Amin, Metab Alharbi, Sundas Ishtiaq, Wasim Sajjad, Faisal Ahmad, Sajjad Ahmad, Faisal Hanif, Muhammad Faheem, Atif Ali Khan Khalil
Over the past decade, methicillin-resistant Staphylococcus aureus (MRSA) has become a major source of biofilm formation and a major contributor to antimicrobial resistance. The genes that govern biofilm formation are regulated by a signaling mechanism called the quorum-sensing system. There is a need for new molecules to treat the infections caused by dangerous pathogens like MRSA. The current study focused on an alternative approach using juglone derivatives from Reynoutria japonica as quorum quenchers. Ten bioactive compounds from this plant, i...
March 14, 2023: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://read.qxmd.com/read/36701992/csmyc2-is-involved-in-the-regulation-of-phenylpropanoid-biosynthesis-induced-by-trypsin-in-cucumber-cucumis-sativus-during-storage
#10
JOURNAL ARTICLE
Jie Wang, Pingping Tian, Jiaju Sun, Bairu Li, Jingyu Jia, Jiangfeng Yuan, Xin Li, Shaobin Gu, Xinyue Pang
Trypsin has a new activity of scavenging superoxide anion and generating hydrogen peroxide. Trypsin can significantly improve the storage quality of C. sativus. To illustrate the mechanism of trypsin-induced resistance in fruits and vegetables, an integrated analysis of widely targeted metabolomics and transcriptomics was carried out. Transcriptomic results showed that 1068 genes highly related to phenylpropanoid biosynthesis gathered in the brown module were obtained by WGCNA. In KEGG analysis, differentially expressed genes (DEGs) were also highly enriched in EIP (Environmental Information Processing) pathways "Plant hormone signal transduction (map04075)" and "MAPK signaling pathway-plant (map04016)"...
January 22, 2023: Plant Physiology and Biochemistry: PPB
https://read.qxmd.com/read/36164866/-transcriptome-profiling-of-saposhnikovia-divaricata-growing-for-different-years-and-mining-of-key-genes-in-active-ingredient-biosynthesis
#11
JOURNAL ARTICLE
Pei-Wen Kou, Chang-le Liu, Yi-Ke Xu, Bo Li, Zhong-Xing Song, Yong-Sheng Zhang, Wen-Jing Huang, Zhi-Shu Tang
Saposhnikovia divaricata is a commonly used bulk medicinal plant. To explore the key enzyme genes and their expression in the biosynthesis of chromone and coumarin, the key active components, we carried out transcriptome sequencing(Illumina HiSeq) and bioinformatics analysis for the 1-year-old(S1) and 2-year-old(S2) plants of S. divaricata. A total of 40.8 Gb data was obtained. After the sequence assembly via Trinity, 110 732 transcripts and 86 233 unigenes were obtained, which were aligned and annotated with NR, Swiss-Prot, GO, KEGG, and PFAM...
September 2022: Zhongguo Zhong Yao za Zhi, Zhongguo Zhongyao Zazhi, China Journal of Chinese Materia Medica
https://read.qxmd.com/read/35807298/coumarin-derivatives-inhibit-adp-induced-platelet-activation-and-aggregation
#12
JOURNAL ARTICLE
Ping-Hsun Lu, Tzu-Hsien Liao, Yau-Hung Chen, Yeng-Ling Hsu, Chan-Yen Kuo, Chuan-Chi Chan, Lu-Kai Wang, Ching-Yuh Chern, Fu-Ming Tsai
Coumarin was first discovered in Tonka bean and then widely in other plants. Coumarin has an anticoagulant effect, and its derivative, warfarin, is a vitamin K analogue that inhibits the synthesis of clotting factors and is more widely used in the clinical treatment of endovascular embolism. At present, many artificial chemical synthesis methods can be used to modify the structure of coumarin to develop many effective drugs with low toxicity. In this study, we investigated the effects of six coumarin derivatives on the platelet aggregation induced by adenosine diphosphate (ADP)...
June 23, 2022: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://read.qxmd.com/read/35701735/combined-transcriptome-and-metabolome-analysis-of-nerium-indicum-l-elaborates-the-key-pathways-that-are-activated-in-response-to-witches-broom-disease
#13
JOURNAL ARTICLE
Shengjie Wang, Shengkun Wang, Ming Li, Yuhang Su, Zhan Sun, Haibin Ma
BACKGROUND: Nerium indicum Mill. is an ornamental plant that is found in parks, riversides, lakesides, and scenic areas in China and other parts of the world. Our recent survey indicated the prevalence of witches' broom disease (WBD) in Guangdong, China. To find out the possible defense strategies against WBD, we performed a MiSeq based ITS sequencing to identify the possible casual organism, then did a de novo transcriptome sequencing and metabolome profiling in the phloem and stem tip of N...
June 14, 2022: BMC Plant Biology
https://read.qxmd.com/read/35693162/integrated-analysis-of-transcriptome-and-metabolome-reveals-the-mechanism-of-chlorine-dioxide-repressed-potato-solanum-tuberosum-l-tuber-sprouting
#14
JOURNAL ARTICLE
Xiaoyuan Zheng, Mei Li, Shilong Tian, Shouqiang Li, Jianxin Chen, Xuejiao Zhang, Xiaohua Wu, Xia Ge, Jiachun Tian, Yuwen Mu, Juan Song
Sprouting is an irreversible deterioration of potato quality, which not only causes loss in their commercial value but also produces harmful toxins. As a popular disinfectant, ClO2 can inhibit the sprouting of potato tubers. Using transcriptomic and metabolomic approaches to understand the repressive mechanism of ClO2 in potato sprouting is yet to be reported. Sequencing the transcriptome and metabolome of potatoes treated with ClO2 in this study revealed a total of 3,119 differentially expressed genes, with 1,247 and 1,872 genes showing down- and upregulated expression, respectively...
2022: Frontiers in Plant Science
https://read.qxmd.com/read/35688186/quantitative-phosphoproteomics-reveal-cellular-responses-from-caffeine-coumarin-and-quercetin-in-treated-hepg2-cells
#15
JOURNAL ARTICLE
Zhenpeng Zhang, Yao Zhang, Yuan Li, Songhao Jiang, Feng Xu, Kaixuan Li, Lei Chang, Huiying Gao, Predrag Kukic, Paul Carmichael, Mark Liddell, Jin Li, Qiang Zhang, Zhitang Lyu, Shuangqing Peng, Tao Zuo, Liz Tulum, Ping Xu
Protein phosphorylation is the most common type of post-translational modification where serine, threonine or tyrosine are reversibly bound to the phosphate group of ATP in a reaction catalyzed by protein kinases. Phosphorylation plays an important role in regulation of cell homeostasis, including but not limited to signal perception and transduction, gene expression and function of proteins. Protein phosphorylation happens on a fast time scale and represents an energy-efficient way for the cell to adapt to exposure to chemical stressors...
June 7, 2022: Toxicology and Applied Pharmacology
https://read.qxmd.com/read/34848684/defense-responses-of-arbuscular-mycorrhizal-fungus-colonized-poplar-seedlings-against-gypsy-moth-larvae-a-multiomics-study
#16
JOURNAL ARTICLE
Dun Jiang, Mingtao Tan, Shuai Wu, Lin Zheng, Qing Wang, Guirong Wang, Shanchun Yan
Arbuscular mycorrhizal (AM) fungi may help protect plants against herbivores; however, their use for the pest control of woody plants requires further study. Here, we investigated the effect of Glomus mosseae colonization on the interactions between gypsy moth larvae and Populus alba × P. berolinensis seedlings and deciphered the regulatory mechanisms underlying the mycorrhizal-induced resistance in the leaves of mycorrhizal poplar using RNA-seq and nontargeted metabolomics. The resistance assay showed that AM fungus inoculation protected poplar seedlings against gypsy moth larvae, as evidenced by the decreased larval growth and reduced larval survival...
December 1, 2021: Horticulture Research
https://read.qxmd.com/read/34710747/human-estrogen-receptor-%C3%AE-antagonists-part-2-synthesis-driven-by-rational-design-in-vitro-antiproliferative-and-in-vivo-anticancer-evaluation-of-innovative-coumarin-related-antiestrogens-as-breast-cancer-suppressants
#17
JOURNAL ARTICLE
Nezrina Kurtanović, Nevena Tomašević, Sanja Matić, Marina M Mitrović, Danijela A Kostić, Manuela Sabatino, Lorenzo Antonini, Rino Ragno, Milan Mladenović
New twelve in silico designed coumarin-based ERα antagonists, namely 3DQ-1a to 3DQ-1е, were synthesized and confirmed as selective ERα antagonists, showing potencies ranging from single-digit nanomolar to picomolar. The hits were confirmed as selective estrogen receptor modulators and validated as antiproliferative agents using MCF-7 breast cancer cell lines exerting from picomolar to low nanomolar potency, at the same time showing no agonistic activity within endometrial cell lines. Their mechanism of action was inspected and revealed to be through the inhibition of the Raf-1/MAPK/ERK signal transduction pathway, preventing hormone-mediated gene expression on either genomic direct or genomic indirect level, and stopping the MCF-7 cells proliferation at G0 /G1 phase...
January 5, 2022: European Journal of Medicinal Chemistry
https://read.qxmd.com/read/34291549/an-activity-based-sensing-fluorogenic-probe-for-monitoring-ethylene-in-living-cells-and-plants
#18
JOURNAL ARTICLE
Yiliang Chen, Wei Yan, Duojing Guo, Yu Li, Ji Li, Hao Liu, Lirong Wei, Na Yu, Biao Wang, Ying Zheng, Maofeng Jing, Jing Zhao, Yonghao Ye
Ethylene (ET) is an important gaseous plant hormone. It is highly desirable to develop fluorescent probes for monitoring ethylene in living cells. We report an efficient RhIII -catalysed coupling of N-phenoxyacetamides to ethylene in the presence of an alcohol. The newly discovered coupling reaction exhibited a wide scope of N-phenoxyacetamides and excellent regioselectivity. We successfully developed three fluorophore-tagged RhIII -based fluorogenic coumarin-ethylene probes (CEPs) using this strategy for the selective and quantitative detection of ethylene...
September 27, 2021: Angewandte Chemie
https://read.qxmd.com/read/34194480/-de-novo-transcriptome-sequencing-coupled-with-co-expression-analysis-reveal-the-transcriptional-regulation-of-key-genes-involved-in-the-formation-of-active-ingredients-in-peucedanum-praeruptorum-dunn-under-bolting-period
#19
JOURNAL ARTICLE
Cheng Song, Xiaoli Li, Bin Jia, Li Liu, Jinmei Ou, Bangxing Han
Peucedanum praeruptorum Dunn is a perennial and one-off flowering plant of the Peucedanum genus in Umbelliferae. The cultivated P. praeruptorum Dunn usually grows nutritionally in the first year and then moves into the reproductive growth in the second year. The lignification of the roots caused by bolting leads to the quality decline of crude materials. Since most of the previous studies have dealt with coumarin biosynthesis and identification of functional genes in P. praeruptorum , the scientific connotation of the inability that the bolted P...
2021: Frontiers in Genetics
https://read.qxmd.com/read/33477262/fraxetin-suppresses-cell-proliferation-and-induces-apoptosis-through-mitochondria-dysfunction-in-human-hepatocellular-carcinoma-cell-lines-huh7-and-hep3b
#20
JOURNAL ARTICLE
Jisoo Song, Jiyeon Ham, Taeyeon Hong, Gwonhwa Song, Whasun Lim
Fraxetin is a coumarin scaffold compound extracted from Fraxinus rhynchophylla . It has antioxidant, anti-inflammatory, hepatoprotective, and antifibrotic effects. Furthermore, fraxetin has anticancer effects in breast and lung cancer. We aimed to evaluate whether fraxetin has anticancer activity in hepatocellular carcinoma (HCC) cells and its underlying mechanism. We demonstrated the anticancer effects of fraxetin in the HCC cell lines Huh7 and Hep3B. We confirmed that fraxetin inhibited cell proliferation (42% ± 10% Huh7; 52% ± 7% Hep3B) by arresting the cell cycle and inducing apoptosis in both cell lines...
January 17, 2021: Pharmaceutics
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