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https://www.readbyqxmd.com/read/28713177/nitsche-s-method-for-helmholtz-problems-with-embedded-interfaces
#1
Zilong Zou, Wilkins Aquino, Isaac Harari
In this work, we use Nitsche's formulation to weakly enforce kinematic constraints at an embedded interface in Helmholtz problems. Allowing embedded interfaces in a mesh provides significant ease for discretization, especially when material interfaces have complex geometries. We provide analytical results that establish the well-posedness of Helmholtz variational problems and convergence of the corresponding finite element discretizations when Nitsche's method is used to enforce kinematic constraints. As in the analysis of conventional Helmholtz problems, we show that the inf-sup constant remains positive provided that the Nitsche's stabilization parameter is judiciously chosen...
May 18, 2017: International Journal for Numerical Methods in Engineering
https://www.readbyqxmd.com/read/28697796/patients-preferences-for-primary-health-care-a-systematic-literature-review-of-discrete-choice-experiments
#2
Kim-Sarah Kleij, Ulla Tangermann, Volker E Amelung, Christian Krauth
BACKGROUND: Primary care is a key element of health care systems and addresses the main health problems of the population. Due to the demographic change, primary care even gains in importance. The knowledge of the patients' preferences can help policy makers as well as physicians to set priorities in their effort to make health care delivery more responsive to patients' needs. Our objective was to describe which aspects of primary care were included in preference studies and which of them were the most preferred aspects...
July 11, 2017: BMC Health Services Research
https://www.readbyqxmd.com/read/28680245/a-nonconforming-scheme-for-non-fickian-flow-in-porous-media
#3
Peizhen Wang, Liying Jiang, Shaochun Chen
In this paper, we construct a semi-discrete scheme and a fully discrete scheme using the Wilson nonconforming element for the parabolic integro-differential equation arising in modeling the non-Fickian flow in porous media by the interior penalty method. Without using the conventional elliptic projection, which was an indispensable tool in the convergence analysis of finite element methods in previous literature, we get an optimal error estimate which is only determined by the interpolation error. Finally, we give some numerical experiments to show the efficiency of the method...
2017: Journal of Inequalities and Applications
https://www.readbyqxmd.com/read/28679929/healthy-sick-dead-an-educational-blueprint-to-state-transition-disease-modelling
#4
Wendelin Schramm, Johannes Rickmann, Fabian Sailer
Disease Modelling of chronic diseases such as diabetes or asthma plays an important role in medical decision making. State transition models are the most frequently used method. The objective is to illustrate the elements and the most important underlying procedures for designing a decision analytic Markov model with only three-states. METHOD: Being "healthy" can be interpreted as a norm state, being "sick" as a temporary state and "dead" as an absorbing state. Transitions with accompanying transition probabilities that allow a cohort of model objects "to flow" between the cumulative exhaustive and mutually exclusive states complete the model structure...
2017: Studies in Health Technology and Informatics
https://www.readbyqxmd.com/read/28675992/a-microbolometer-system-for-radiation-detection-in-the-thz-frequency-range-with-a-resonating-cavity-fabricated-in-the-cmos-technology
#5
Aleksander Sesek, Andrej Zemva, Janez Trontelj
BACKGROUND: The THz sensors using microbolometers as a sensing element are reported as one of the most sensitive room-temperature THz detectors suitable for THz imaging and spectroscopic applications. Microbolometer detectors are usually fabricated using different types of the MEMS technology. The patent for the detection system presented in this paper describes a method for microbolometer fabrication using a standard CMOS technology with advanced micromachining techniques. The measured sensitivity of the sensors fabricated by the patented method is 1000 V/W at an optimal frequency and is determined by the performance of a double-dipole antenna and quarter-wavelength resonant cavity...
July 4, 2017: Recent Patents on Nanotechnology
https://www.readbyqxmd.com/read/28673634/orthogonality-measurements-for-multidimensional-chromatography-in-three-and-higher-dimensional-separations
#6
Mark R Schure, Joe M Davis
Orthogonality metrics (OMs) for three and higher dimensional separations are proposed as extensions of previously developed OMs, which were used to evaluate the zone utilization of two-dimensional (2D) separations. These OMs include correlation coefficients, dimensionality, information theory metrics and convex-hull metrics. In a number of these cases, lower dimensional subspace metrics exist and can be readily calculated. The metrics are used to interpret previously generated experimental data. The experimental datasets are derived from Gilar's peptide data, now modified to be three dimensional (3D), and a comprehensive 3D chromatogram from Moore and Jorgenson...
June 13, 2017: Journal of Chromatography. A
https://www.readbyqxmd.com/read/28668018/application-of-the-spectral-element-method-to-the-solution-of-the-multichannel-schr%C3%A3-dinger-equation
#7
Andrea Simoni, Alexandra Viel, Jean-Michel Launay
We apply the spectral element method to the determination of scattering and bound states of the multichannel Schrödinger equation. In our approach, the reaction coordinate is discretized on a grid of points whereas the internal coordinates are described by either purely diabatic or locally diabatic (diabatic-by-sector) bases. Bound levels and scattering matrix elements are determined with spectral accuracy using relatively small number of points. The scattering problem is cast as a linear system solved using state-of-the-art sparse matrix non-iterative packages...
June 28, 2017: Journal of Chemical Physics
https://www.readbyqxmd.com/read/28651901/benchmarking-numerical-codes-for-tracer-transport-with-the-aid-of-laboratory-scale-experiments-in-2d-heterogeneous-porous-media
#8
Fadji Hassane Maina, Philippe Ackerer, Anis Younes, Alberto Guadagnini, Brian Berkowitz
We present a combined experimental and numerical modeling study that addresses two principal questions: (i) is any particular Eulerian-based method used to solve the classical advection-dispersion equation (ADE) clearly superior (relative to the others), in terms of yielding solutions that reproduce BTCs of the kind that are typically sampled at the outlet of a laboratory cell? and (ii) in the presence of matches of comparable quality against such BTCs, do any of these methods render different (or similar) numerical BTCs at locations within the domain? To address these questions, we obtained measurements from carefully controlled laboratory experiments, and employ them as a reference against which numerical results are benchmarked and compared...
June 7, 2017: Journal of Contaminant Hydrology
https://www.readbyqxmd.com/read/28618811/vocal-repertoire-of-long-finned-pilot-whales-globicephala-melas-in-northern-norway
#9
Heike Vester, Sarah Hallerberg, Marc Timme, Kurt Hammerschmidt
The knowledge of the vocal repertoire of pilot whales is very limited. In this paper, the vocal repertoire of long-finned pilot whales recorded during different encounters in the Vestfjord in northern Norway between November 2006 and August 2010 are described. Sounds were analysed using two different methods: (1) an observer-based audio-visual inspection of FFT-derived spectrograms, with which, besides a general variety of clicks, buzzes, nonharmonic sounds, and whistles, 129 different distinct call types and 25 subtypes were distinguished...
June 2017: Journal of the Acoustical Society of America
https://www.readbyqxmd.com/read/28618587/general-scaling-relations-for-locomotion-in-granular-media
#10
James Slonaker, D Carrington Motley, Qiong Zhang, Stephen Townsend, Carmine Senatore, Karl Iagnemma, Ken Kamrin
Inspired by dynamic similarity in fluid systems, we have derived a general dimensionless form for locomotion in granular materials, which is validated in experiments and discrete element method (DEM) simulations. The form instructs how to scale size, mass, and driving parameters in order to relate dynamic behaviors of different locomotors in the same granular media. The scaling can be derived by assuming intrusion forces arise from resistive force theory or equivalently by assuming the granular material behaves as a continuum obeying a frictional yield criterion...
May 2017: Physical Review. E
https://www.readbyqxmd.com/read/28618469/collisional-dissipation-rate-in-shearing-flows-of-granular-liquid-crystals
#11
Diego Berzi, Nha Thai-Quang, Yu Guo, Jennifer Curtis
We make use of discrete-element-method numerical simulations of inelastic frictionless cylinders in simple shearing at different length-to-diameter ratios and solid volume fractions to analyze the rate of collisional dissipation of the fluctuation kinetic energy. We show that the nonspherical geometry of the particles is responsible, by inducing rotation, for increasing the dissipation rate of the fluctuation kinetic energy with respect to that for frictionless spheres. We also suggest that the partial alignment of the cylinders induced by shearing concurs with the particle inelasticity in generating correlation in the velocity fluctuations and thus affecting the collisional dissipation rate as the solid volume fraction increases...
May 2017: Physical Review. E
https://www.readbyqxmd.com/read/28615743/edge-based-nonlinear-diffusion-for-finite-element-approximations-of-convection-diffusion-equations-and-its-relation-to-algebraic-flux-correction-schemes
#12
Gabriel R Barrenechea, Erik Burman, Fotini Karakatsani
For the case of approximation of convection-diffusion equations using piecewise affine continuous finite elements a new edge-based nonlinear diffusion operator is proposed that makes the scheme satisfy a discrete maximum principle. The diffusion operator is shown to be Lipschitz continuous and linearity preserving. Using these properties we provide a full stability and error analysis, which, in the diffusion dominated regime, shows existence, uniqueness and optimal convergence. Then the algebraic flux correction method is recalled and we show that the present method can be interpreted as an algebraic flux correction method for a particular definition of the flux limiters...
2017: Numer Math (Heidelb)
https://www.readbyqxmd.com/read/28609299/arterial-waveguide-model-for-shear-wave-elastography-implementation-and-in-vitro-validation
#13
Ali Vaziri Astaneh, Matthew W Urban, Wilkins Aquino, James F Greenleaf, Murthy N Guddati
Arterial stiffness is found to be an early indicator of many cardiovascular diseases. Among various techniques, shear wave elastography has emerged as a promising tool for estimating local arterial stiffness through the observed dispersion of guided waves. In this paper, we develop efficient models for the computational simulation of guided wave dispersion in arterial walls. The models are capable of considering fluid-loaded tubes, immersed in fluid or embedded in a solid, which are encountered in in vitro/ex vivo, and in vivo experiments...
July 7, 2017: Physics in Medicine and Biology
https://www.readbyqxmd.com/read/28599536/effect-of-a-serrated-trailing-edge-on-sound-radiation-from-nearby-quadrupoles
#14
Mahmoud Karimi, Paul Croaker, Roger Kinns, Nicole Kessissoglou
A periodic boundary element technique is implemented to study the noise reduction capability of a plate with a serrated trailing edge under quadrupole excitation. It is assumed for this purpose that the quadrupole source tensor is independent of the trailing edge configuration and that the effect of the trailing edge shape is to modify sound radiation from prescribed boundary layer sources. The flat plate is modelled as a continuous structure with a finite repetition of small spanwise segments. The matrix equation formulated by the periodic boundary element method for this 3D acoustic scattering problem is represented as a block Toeplitz matrix...
May 2017: Journal of the Acoustical Society of America
https://www.readbyqxmd.com/read/28593458/sensitivity-based-adaptive-mesh-refinement-collocation-method-for-dynamic-optimization-of-chemical-and-biochemical-processes
#15
Long Xiao, Ping Liu, Xinggao Liu, Zeyin Zhang, Yalin Wang, Chunhua Yang, Weihua Gui, Xu Chen, Bochao Zhu
Collocation on finite element (CFE) is an effective simultaneous method of dynamic optimization to increase the profitability or productivity of industrial process. The approach needs to select an optimal mesh of time interval to balance the computational cost with desired solution. A new CFE approach with non-uniform refinement procedure based on the sensitivity analysis for dynamic optimization problems is, therefore, proposed, where a subinterval is further refined if the obtained control parameters have significant effect on the performance index...
June 7, 2017: Bioprocess and Biosystems Engineering
https://www.readbyqxmd.com/read/28587636/recognizing-rna-structural-motifs-in-ht-selex-data-for-ribosomal-protein-s15
#16
Shermin Pei, Betty L Slinger, Michelle M Meyer
BACKGROUND: Proteins recognize many different aspects of RNA ranging from single stranded regions to discrete secondary or tertiary structures. High-throughput sequencing (HTS) of in vitro selected populations offers a large scale method to study RNA-proteins interactions. However, most existing analysis methods require that the binding motifs are enriched in the population relative to earlier rounds, and that motifs are found in a loop or single stranded region of the potential RNA secondary structure...
June 6, 2017: BMC Bioinformatics
https://www.readbyqxmd.com/read/28579077/phylogenomic-analysis-of-lake-malawi-cichlid-fishes-further-evidence-that-the-three-stage-model-of-diversification-does-not-fit
#17
Christopher Darrin Hulsey, Jimmy Zheng, Brant C Faircloth, Axel Meyer, Michael E Alfaro
Adaptive radiations could often occur in discrete stages. For instance, the species flock of ∼1000 species of Lake Malawi cichlid fishes might have only diverged once between rocky and sandy environments during the initial stage of their diversification. All further diversification within the rock-dwelling (mbuna) or sand-dwelling (utaka) cichlids would have occurred during a subsequent second stage of extensive trophic evolution that was followed by a third stage of sexual trait divergence. We provide an improved phylogenetic framework for Malawi cichlids to test this three-stage hypothesis based on newly reconstructed phylogenetic relationships among 32 taxonomically disparate Malawi cichlids species...
June 1, 2017: Molecular Phylogenetics and Evolution
https://www.readbyqxmd.com/read/28574733/mechanistic-investigation-of-mixing-segregation-of-ordered-mixtures-experiments-numerical-simulations
#18
Saurabh Sarkar, Bruna Minatovicz, Kyrre Thalberg, Bodhisattwa Chaudhuri
Pulmonary delivery of cohesive and micronized drugs through Dry Powder Inhalers (DPIs) is traditionally achieved through the formation of ordered mixtures. In order to improve the mechanistic understanding of formation of ordered mixtures, the system consisting of micronized lactose (AZFL, representative of an active pharmaceutical ingredient) and a coarse particle carrier (LH100) is investigated as a function of different process and material variables in a high shear mixer (HSM) and in a low shear double cone (DCN) blender, using both experimental and numerical methods...
June 2, 2017: Drug Development and Industrial Pharmacy
https://www.readbyqxmd.com/read/28553011/computational-fluid-dynamics-discrete-element-method-cfd-dem-study-of-mass-transfer-mechanisms-in-riser-flow
#19
Álvaro E Carlos Varas, E A J F Peters, J A M Kuipers
We report a computational fluid dynamics-discrete element method (CFD-DEM) simulation study on the interplay between mass transfer and a heterogeneous catalyzed chemical reaction in cocurrent gas-particle flows as encountered in risers. Slip velocity, axial gas dispersion, gas bypassing, and particle mixing phenomena have been evaluated under riser flow conditions to study the complex system behavior in detail. The most important factors are found to be directly related to particle cluster formation. Low air-to-solids flux ratios lead to more heterogeneous systems, where the cluster formation is more pronounced and mass transfer more influenced...
May 17, 2017: Industrial & Engineering Chemistry Research
https://www.readbyqxmd.com/read/28552920/an-alternative-3d-numerical-method-to-study-the-biomechanical-behaviour-of-the-human-inner-ear-semicircular-canal
#20
Carla F Santos, Jorge Belinha, Fernanda Gentil, Marco Parente, Renato N Jorge
PURPOSE: The vestibular system is the part of the inner ear responsible for balance. Vertigo and dizziness are generally caused by vestibular disorders and are very common symptoms in people over 60 years old. One of the most efficient treatments at the moment is vestibular rehabilitation, permitting to improve the symptoms. However, this rehabilitation therapy is a highly empirical process, which needs to be enhanced and better understood. METHODS: This work studies the vestibular system using an alternative computational approach...
2017: Acta of Bioengineering and Biomechanics
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