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Actinomycetes

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https://www.readbyqxmd.com/read/28107573/diversity-and-bioprospecting-of-actinomycete-endophytes-from-the-medicinal-plants
#1
REVIEW
Nalini Monnanda Somaiah, Harishchandra Sripathy Prakash
The endophytic actinomycetes constitute one of the fascinating group of microorganisms associated with a wide range of plant species. The diversity of actinomycetes in plants and their tissue parts is a matter of debate as no consensus are derived between individual studies. Nevertheless, their diversity correlates with the occurrence in plant species harbored in unique regions of biologically diverse areas called 'hot spots'. Recent advances in the isolation techniques have facilitated the isolation of rare taxa from these environments...
January 20, 2017: Letters in Applied Microbiology
https://www.readbyqxmd.com/read/28105601/gordonia-isolation-and-identification-in-clinical-samples-and-role-in-biotechnology
#2
REVIEW
Fatemeh Andalibi, Mehdi Fatahi-Bafghi
Gordonia spp. are members of the actinomycete family, and the environment, especially soil, is the natural habitat of this genus of bacteria. Gordonia spp. are important for two aspects: first, some Gordonia species cause a broad spectrum of diseases in healthy and immunocompromised individuals; second, these bacteria are capable of producing useful secondary metabolites, which may be used in various industries; therefore, discrimination of the genus Gordonia from other genera in the actinomycete family is important...
January 20, 2017: Folia Microbiologica
https://www.readbyqxmd.com/read/28103675/genome-mining-of-amino-group-carrier-protein-mediated-machinery-discovery-and-biosynthetic-characterization-of-a-natural-product-with-unique-hydrazone-unit
#3
Kenichi Matsuda, Fumihito Hasebe, Yuh Shiwa, Yu Kanesaki, Takeo Tomita, Hirofumi Yoshikawa, Kazuo Shin-Ya, Tomohisa Kuzuyama, Makoto Nishiyama
We recently revealed that a Streptomyces strain possesses the gene encoding amino group carrier protein (AmCP). AmCP is involved in the biosynthesis of a previously unidentified nonproteinogenic amino acid, (2S,6R)-diamino-(5R,7)-dihydroxy-heptanoic acid (DADH), which is a core compound for the synthesis of the dipeptide-containing novel natural product vazabitide A. We used polymerase chain reaction (PCR) screening to investigate the diversity of the biosynthetic machinery that uses AmCP; the results revealed that genes encoding AmCP are widely distributed among actinomycetes...
January 20, 2017: ACS Chemical Biology
https://www.readbyqxmd.com/read/28100308/williamsia-spongiae-sp-nov-an-actinomycete-isolated-from-the-marine-sponge-amphimedon-viridis
#4
Cláudia Beatriz Afonso de Menezes, Rafael Sanches Afonso, Wallace Rafael de Souza, Márcia Parma, Itamar Soraes de Melo, Tiago Domingues Zucchi, Fabiana Fantinatti-Garboggini
A novel actinobacterium, designated isolate B138T, was isolated from marine sponge Amphimedon viridis, which was collected from Praia Guaecá (São Paulo, Brazil), and its taxonomic position established using data from a polyphasic study. The organism showed a combination of chemotaxonomic and morphological characteristics consistent with its classification in the genus Williamsia and formed a distinct phyletic line in the Williamsia 16S rRNA gene tree. It was most closely related to Williamsia serinedens DSM 45037T and Williamsia deligens DSM 44902T (99...
January 16, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28095586/antichlamydial-dimeric-indole-derivatives-from-marine-actinomycete-rubrobacter-radiotolerans
#5
Jian Lin Li, Dandan Chen, Lei Huang, Min Ni, Yu Zhao, Huizhou Fan, Xiaofeng Bao
Chlamydiae are widely distributed pathogens of human populations, which can lead to serious reproductive and other health problems. In our search for novel antichlamydial metabolites from marine derived-microorganisms, one new (1) and two known (2, 3) dimeric indole derivatives were isolated from the sponge-derived actinomycete Rubrobacter radiotolerans. The chemical structures of these metabolites were elucidated by NMR spectroscopic data as well as CD calculations. All three metabolites suppressed chlamydial growth in a concentration-dependent manner...
January 17, 2017: Planta Medica
https://www.readbyqxmd.com/read/28095182/effect-of-intermittent-aeration-on-microbial-diversity-in-an-intermittently-aerated-ifas-reactor-treating-municipal-wastewater-a-field-study
#6
Akansha Bhatia, Nitin Kumar Singh, Timsi Bhando, Ranjana Pathania, Absar Ahmad Kazmi
In the present study, the effect of three intermittent aeration (IA) cycles on treatment performance and microbial diversity was investigated in an integrated fixed film activated sludge (IFAS) reactor treating municipal wastewater. The results showed that IA strategies were able to achieve efficient removal of organics and nitrogen ranging between 90 and 95% and 70 and 80%, respectively, however the phosphorus removal was found to be inversely proportional to the duration of aeration off time in each IA cycle...
January 17, 2017: Journal of Environmental Science and Health. Part A, Toxic/hazardous Substances & Environmental Engineering
https://www.readbyqxmd.com/read/28088540/multiplexed-site-specific-genome-engineering-for-overproducing-bioactive-secondary-metabolites-in-actinomycetes
#7
Lei Li, Guosong Zheng, Jun Chen, Mei Ge, Weihong Jiang, Yinhua Lu
Actinomycetes produce a large variety of pharmaceutically active compounds, yet production titers often require to be improved for discovery, development and large-scale manufacturing. Here, we describe a new technique, multiplexed site-specific genome engineering (MSGE) via the 'one integrase-multiple attB sites' concept, for the stable integration of secondary metabolite biosynthetic gene clusters (BGCs). Using MSGE, we achieved five-copy chromosomal integration of the pristinamycin II (PII) BGC in Streptomyces pristinaespiralis, resulting in the highest reported PII titers in flask and batch fermentations (2...
January 11, 2017: Metabolic Engineering
https://www.readbyqxmd.com/read/28075574/visualization-of-mycobacterial-membrane-dynamics-in-live-cells
#8
Frances P Rodriguez-Rivera, Xiaoxue Zhou, Julie A Theriot, Carolyn R Bertozzi
Mycobacteria are endowed with a highly impermeable mycomembrane that confers intrinsic resistance to many antibiotics. Several unique mycomembrane glycolipids have been isolated and structurally characterized, but the underlying organization and dynamics of glycolipids within the cell envelope remain poorly understood. We report here a study of mycomembrane dynamics that was enabled by trehalose-fluorophore conjugates capable of labeling trehalose glycolipids in live actinomycetes. We identified fluorescein-trehalose analogs that are metabolically incorporated into the trehalose mycolates of representative Mycobacterium, Corynebacterium, Nocardia and Rhodococcus species...
January 11, 2017: Journal of the American Chemical Society
https://www.readbyqxmd.com/read/28075556/biosynthesis-of-the-methylthioxylose-capping-motif-of-lipoarabinomannan-in-mycobacterium-tuberculosis
#9
Shiva Kumar Angala, Michael R McNeil, Libin Shi, Maju Joe, Ha Pham, Sophie Zuberogoitia, Jerome Nigou, Claudia M Boot, Todd L Lowary, Martine Gilleron, Mary Jackson
Lipoarabinomannan (LAM) is a lipoglycan found in abundant quantities in the cell envelope of all mycobacteria. The non-reducing arabinan termini of LAM display species-specific structural micro-heterogeneity that impacts the biological activity of the entire molecule. Mycobacterium tuberculosis, for instance, produces mannoside caps made of one to three α(1→2)-Manp-linked residues that may be further substituted with an α(1→4)-linked methylthio-D-xylose (MTX) residue. While the biological functions and catalytic steps leading to the formation of the mannoside caps of M...
January 11, 2017: ACS Chemical Biology
https://www.readbyqxmd.com/read/28074052/kribellosides-novel-rna-5-triphosphatase-inhibitors-from-the-rare-actinomycete-kribbella-sp-mi481-42f6
#10
Masayuki Igarashi, Ryuichi Sawa, Manabu Yamasaki, Chigusa Hayashi, Maya Umekita, Masaki Hatano, Toshinobu Fujiwara, Kiyohisa Mizumoto, Akio Nomoto
Yeast capping enzymes differ greatly from those of mammalian, both structurally and mechanistically. Yeast-type capping enzyme repressors are therefore candidate antifungal drugs. The 5'-guanine-N7 cap structure of mRNAs are an essential feature of all eukaryotic organisms examined to date and is the first co-transcriptional modification of cellular pre-messenger RNA. Inhibitors of the RNA 5'-triphosphatase in yeast are likely to show fungicidal effects against pathogenic yeast such as Candida. We discovered a new RNA 5'-triphosphatase inhibitor, designated as the kribellosides, by screening metabolites from actinomycetes...
January 11, 2017: Journal of Antibiotics
https://www.readbyqxmd.com/read/28073400/haloactinomyces-albus-gen-nov-sp-nov-isolated-from-dead-sea
#11
Hangxian Lai, Yingying Jiang, Xiu Chen, Qinyuan Li, Chenglin Jiang, Yi Jiang, Xiaomin Wei
A novel halophilic, filamentous actinomycete strain, designated AFM 10258T, was isolated from a sediment sample collected from Dead Sea of Israel. The isolate grew with 10-35% NaCl and did not grow without NaCl. The isolate formed white aerial mycelium and long spore chains, and two spores were separated by sterile mycelium. The spores were non-motile, spherical and rugose-surfaced. The isolate contained meso-diaminopimelic acid as the diagnostic diamino acid and galactose and arabinose as the major whole-cell sugars...
January 10, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28073395/actinophytocola-xanthii-sp-nov-a-novel-actinomycete-isolated-from-rhizosphere-soil-of-the-plant-xanthium-sibiricum
#12
Wei Wang, Bin Wang, Haoyi Meng, Zhaobin Xing, Qiliang Lai, Lijie Yuan
A novel actinomycete strain, 11-183T, was isolated from the rhizosphere soil of Xanthium sibiricum, which was collected in Tangshan, Hebei, China. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain 11-183T formed a clade within the genus Actinophytocola, with a maximum similarity of 98.44 % to Actinophytocola xinjiangensis QAIII60T, followed by 97.76 % similarity to Actinophytocola sediminis YIM M13705T(97.76%). The average nucleotide identity and digital DNA-DNA hybridization values differed by 79...
January 10, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28068396/effects-of-pulp-and-na-bentonite-amendments-on-the-mobility-of-trace-elements-soil-enzymes-activity-and-microbial-parameters-under-ex-situ-aided-phytostabilization
#13
Daniel Wasilkowski, Anna Nowak, Grażyna Płaza, Agnieszka Mrozik
The objective of this study was to explore the potential use of pulp (by-product) from coffee processing and Na-bentonite (commercial product) for minimizing the environmental risk of Zn, Pb and Cd in soil collected from a former mine and zinc-lead smelter. The effects of soil amendments on the physicochemical properties of soil, the structural and functional diversity of the soil microbiome as well as soil enzymes were investigated. Moreover, biomass of Festuca arundinacea Schreb. (cultivar Asterix) and the uptake of trace elements in plant tissues were studied...
2017: PloS One
https://www.readbyqxmd.com/read/28068267/clinicopathologic-correlation-mixed-density-lesion-in-the-posterior-mandible
#14
Aram Sun, Pallavi Parashar, James J Closmann
A middle-aged man presented for evaluation of a mixed-density lesion of the left posterior mandible. This clinicopathologic correlation presents the radiographic, clinical, and histopathologic findings; differential diagnosis; and treatment plan for this case. The lesion was deemed to be of bacteriologic origin, likely a polymicrobial infection containing actinomycetes. Clinical care and follow-up for the patient are discussed.
January 2017: General Dentistry
https://www.readbyqxmd.com/read/28062460/large-scale-transposition-mutagenesis-of-streptomyces-coelicolor-identifies-hundreds-of-genes-influencing-antibiotic-biosynthesis
#15
Zhong Xu, Yemin Wang, Keith F Chater, Hong-Yu Ou, H Howard Xu, Zixin Deng, Meifeng Tao
: Gram-positive Streptomyces bacteria produce thousands of bioactive secondary metabolites including antibiotics. To systematically investigate genes affecting secondary metabolism, we developed a hyperactive transposase-based Tn5 transposition system and employed it to mutagenize the model species Streptomyces coelicolor, leading to the identification of 51,443 transposition insertions. These insertions were distributed randomly along the chromosome except for some preferred regions associated with relatively low GC content in the chromosomal core...
January 6, 2017: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/28056728/antimicrobial-effectiveness-of-synthesized-bioactive-silver-nanoparticles-by-the-actinomycetes-hgg16n-strain
#16
Bogusław Buszewskia, Viorica Railean-Plugarua, Paweł Pomastowski, Katarzyna Rafińskaa, Malgorzata Szultka-Mlynskaa, Tomasz Kowalkowskia
BACKGROUND: Biologically synthetized silver nanoparticles are promising antimicrobial agent. Flow cytometry, well diffusion methods, colony-forming units (CFU) and spectroscopic approach are commonly used in antimicrobial study. The aims of this study were to provides information about effectiveness of BioAgNPs synthesized by Actinomycetes HGG16n using fluorescence flow cytometry method as an alternative to the standard ones (well and disc diffusion method). METHODS: It was applied flow cytometry technique to monitor the antibacterial effect of biocolloidal silver and its combination with various commercial antibiotics against selected pathogens...
January 4, 2017: Current Pharmaceutical Biotechnology
https://www.readbyqxmd.com/read/28056223/arthrobacter-halophytocola-sp-nov-a-novel-endophytic-actinomycete-isolated-from-the-roots-of-a-coastal-halophyte-limonium-sinense
#17
Wei-Wei Feng, Tian-Tian Wang, Juan-Luan Bai, Peng Ding, Ke Xing, Ji-Hong Jiang, Xue Peng, Sheng Qin
A novel actinobacterium designated KLBMP 5180T, was isolated from the surface-sterilized root of a coastal halophyte Limonium sinense collected from the city of Lianyungang, Jiangsu Province, east of China. The isolate was Gram-stain-positive, aerobic and non-motile. The components of cell-wall peptidoglycan were lysine, glutamic acid and alanine. The predominant menaquinone was MK-9 (70%). The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and one unknown phospholipid...
January 5, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28052753/chromosomal-position-effect-influences-the-heterologous-expression-of-genes-and-biosynthetic-gene-clusters-in-streptomyces-albus-j1074
#18
Bohdan Bilyk, Liliya Horbal, Andriy Luzhetskyy
BACKGROUND: Efforts to construct the Streptomyces host strain with enhanced yields of heterologous product have focussed mostly on engineering of primary metabolism and/or the deletion of endogenous biosynthetic gene clusters. However, other factors, such as chromosome compactization, have been shown to have a significant influence on gene expression levels in bacteria and fungi. The expression of genes and biosynthetic gene clusters may vary significantly depending on their location within the chromosome...
January 4, 2017: Microbial Cell Factories
https://www.readbyqxmd.com/read/28049552/antiproliferative-cyclodepsipeptides-from-the-marine-actinomycete-streptomyces-sp-p11-23b-downregulating-the-tumor-metabolic-enzymes-of-glycolysis-glutaminolysis-and-lipogenesis
#19
Xuewei Ye, Komal Anjum, Tengfei Song, Wenling Wang, Ying Liang, Mengxuan Chen, Haocai Huang, Xiao-Yuan Lian, Zhizhen Zhang
Two cyclodepsipeptides and a known cyclodepsipeptide valinomycin were isolated from a culture of the marine actinomycete Streptomyces sp. P11-23B. Their structures were established based on NMR, HRESIMS, and MS-MS spectroscopic interpretation as well as by chemical degradation. Both streptodepsipeptides P11A and P11B inhibited proliferation of different glioma cell lines, with IC50 values ranging from 0.1 μM to 1.4 μM. Streptodepsipeptide P11A was found to block the cell cycle at the G0/G1 phase and induce apoptosis in glioma cells...
December 31, 2016: Phytochemistry
https://www.readbyqxmd.com/read/28049355/natural-production-of-fluorinated-compounds-and-biotechnological-prospects-of-the-fluorinase-enzyme
#20
Maria F Carvalho, Rui S Oliveira
Fluorinated compounds are finding increasing uses in several applications. They are employed in almost all areas of modern society. These compounds are all produced by chemical synthesis and their abundance highly contrasts with fluorinated molecules of natural origin. To date, only some plants and a handful of actinomycetes species are known to produce a small number of fluorinated compounds that include fluoroacetate (FA), some ω-fluorinated fatty acids, nucleocidin, 4-fluorothreonine (4-FT), and the more recently identified (2R3S4S)-5-fluoro-2,3,4-trihydroxypentanoic acid...
January 3, 2017: Critical Reviews in Biotechnology
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