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MALDI Imaging

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https://www.readbyqxmd.com/read/29153034/advances-in-maldi-mass-spectrometry-within-drug-discovery
#1
Dale S Cornett, Michael D Scholle
Inhibition of NK and effector T-cell functions and activation of regulatory cell populations are the main immunosuppressive effects of indoleamine-2,3-dioxygenase1 (IDO1). By converting tryptophan (Trp) into kynurenine (Kyn), IDO1 is involved in the immune response homeostasis, and its dysregulated expression is described in immune-related pathologies, as tumors that hijack it to evade immune destruction. Thereby, IDO1 inhibitors are being developed to stimulate antitumor immune responses. Existing and standard quantitation methods of IDO1 substrate and metabolite(s) are based on the total level of Trp and its metabolites determined by liquid chromatography tandem mass spectrometry analysis in human plasma, cerebrospinal fluid, and brain...
December 2017: SLAS Discovery
https://www.readbyqxmd.com/read/29137123/proteomic-characterization-of-the-venom-of-five-bombus-thoracobombus-species
#2
Nezahat Pınar Barkan, Mustafa Bilal Bayazit, Duygu Ozel Demiralp
Venomous animals use venom, a complex biofluid composed of unique mixtures of proteins and peptides, to act on vital systems of the prey or predator. In bees, venom is solely used for defense against predators. However, the venom composition of bumble bees (Bombus sp.) is largely unknown. The Thoracobombus subgenus of Bombus sp. is a diverse subgenus represented by 14 members across Turkey. In this study, we sought out to proteomically characterize the venom of five Thoracobombus species by using bottom-up proteomic techniques...
November 11, 2017: Toxins
https://www.readbyqxmd.com/read/29135031/comparative-proteomics-illustrates-the-molecular-mechanism-of-potato-solanum-tuberosum-l-tuberization-inhibited-by-exogenous-gibberellins-in-vitro
#3
Lixiang Cheng, Yuping Wang, Yueshan Liu, Qingquan Zhang, Huihui Gao, Zhang Feng
Among the multiple environmental signals and hormonal factors regulating potato tuberization, gibberellins (GAs) are important components of the signaling pathways in these processes. To understand the GAs-signaling response mechanism of potato tuberization, a comparative proteomics approach was applied to analyze proteome change of potato tuberization in vitro subjected to a range of exogenous GA3 treatments (0, 0.01, 0.1 and 1.0 μΜ) using two-dimensional gel electrophoresis. Quantitative image analyses showed that a total of 37 protein spots have their abundance significantly altered more than 2-fold...
November 14, 2017: Physiologia Plantarum
https://www.readbyqxmd.com/read/29127660/exposure-to-a-sublethal-concentration-of-imidacloprid-and-the-side-effects-on-target-and-nontarget-organs-of-apis-mellifera-hymenoptera-apidae
#4
Aline Fernanda Catae, Thaisa Cristina Roat, Marcel Pratavieira, Anally Ribeiro da Silva Menegasso, Mario Sergio Palma, Osmar Malaspina
The use of insecticides has become increasingly frequent, and studies indicate that these compounds are involved in the intoxication of bees. Imidacloprid is a widely used neonicotinoid; thus, we have highlighted the importance of assessing its oral toxicity to Africanized bees and used transmission electron microscopy to investigate the sublethal effects in the brain, the target organ, and the midgut, responsible for the digestion/absorption of food. In addition, the distribution of proteins involved in important biological processes in the brain were evaluated on the 1st day of exposure by MALDI-imaging analysis...
November 10, 2017: Ecotoxicology
https://www.readbyqxmd.com/read/29124930/dual-internal-standards-with-metals-and-molecules-for-maldi-imaging-of-kidney-lipids
#5
Sarah Ahmed Aboulmagd, Diego Esteban-Fernández, Estefania Moreno-Gordaliza, Boris Neumann, Ahmed H El-Khatib, Alberto Lazaro, Alberto Tejedor, M Milagros Gómez-Gómez, Michael W Linscheid
The quest for internal standards useful in MALDI imaging studies goes on to get not only lateral distribution but also reliable abundance of ions, thus quantitative information. We developed a procedure based on application of matrix and dual internal standards to allow intra- and inter-sample normalization of lipids intensities in kidney sections of control and cisplatin-treated Wistar rats. An inkjet printer was used to deposit a custom-prepared ink with DHB as MALDI matrix, a primary lipids-based internal standard, and a spiked lanthanide as a secondary internal standard...
November 10, 2017: Analytical Chemistry
https://www.readbyqxmd.com/read/29122912/top-down-microproteomics-bridged-to-maldi-ms-imaging-reveals-the-molecular-physiome-of-brain-regions
#6
Vivian Delcourt, Julien Franck, Jusal Quanico, Jean-Pascal Gimeno, Maxence Wisztorski, Antonella Raffo Romero, Firas Kobeissy, Xavier Roucou, Michel Salzet, Isabelle Fournier
Tissue top-down microproteomics was performed on 3 brain regions, leading to the characterization of 123 reference proteins. Moreover, 8 alternative proteins from alternative open reading frames (AltORF) were identified. Some proteins display specific post-translational modification profiles or truncation linked to the brain regions and their functions. Systems biology analysis performed on the microproteome identified in each region allowed to associate sub-networks with the functional physiology of each brain region...
November 9, 2017: Molecular & Cellular Proteomics: MCP
https://www.readbyqxmd.com/read/29122612/maldi-imaging-of-enzymatic-degradation-of-glycerides-by-lipase-on-textile-surface
#7
Jonatan Hall-Andersen, Svend G Kaasgaard, Christian Janfelt
Most modern laundry detergents contain enzymes such as proteases, amylases, and lipases for more efficient removal of stains containing proteins, carbohydrates, and lipids during wash at low temperature. The function of the lipases is to hydrolyse the hydrophobic triglycerides from fats and oils to the more hydrophilic lipids diglycerides, monoglycerides and free fatty acids. Here, we use MALDI imaging to study the effect of enzymatic degradation of triglycerides by lipases directly on the textile surface. Textile samples were created by using swatches of different textile blends, adding a lipid stain and simulating washing cycles using well-defined detergents with lipase concentrations ranging between 0 and 0...
November 6, 2017: Chemistry and Physics of Lipids
https://www.readbyqxmd.com/read/29119981/magnetic-bead-based-peptide-extraction-methodology-for-tissue-imaging
#8
William T Andrews, Susan B Skube, Amanda B Hummon
MALDI-TOF imaging mass spectrometry (IMS) is a common technique used for analyzing tissue samples, as it allows the user to detect multiple different analytes simultaneously. However, the detection and analysis of these analytes may sometimes be hampered due to the presence of contaminants in the tissue microenvironment, which leads to ion suppression. This challenge necessitates the development of an active extraction technique to selectively isolate analytes of interest without compromising their spatial localization within a tissue sample...
November 9, 2017: Analyst
https://www.readbyqxmd.com/read/29117637/secondary-ion-mass-spectrometry-imaging-and-multivariate-data-analysis-reveal-co-aggregation-patterns-of-populus-trichocarpa-leaf-surface-compounds-on-a-micrometer-scale
#9
Purva Kulkarni, Mina Dost, Özgül Demir Bulut, Alexander Welle, Sebastian Böcker, Wilhelm Boland, Aleš Svatoš
Spatially resolved analysis of a multitude of compound classes has become feasible with the rapid advancement in mass spectrometry imaging strategies. In this study, we present a protocol that combines high lateral resolution TOF-SIMS imaging with a multivariate data analysis (MVA) approach to probe the complex leaf surface chemistry of Populus trichocarpa. Here, epicuticular waxes (EWs) found on the adaxial leaf surface of Populus trichocarpa were blotted on silicon wafers and imaged using time-of-flight secondary ion mass spectrometry (TOF-SIMS) at 10 μm and 1 μm lateral resolution...
November 8, 2017: Plant Journal: for Cell and Molecular Biology
https://www.readbyqxmd.com/read/29108275/functional-imaging-in-combination-with-mutation-status-aids-prediction-of-response-to-inhibiting-b-cell-receptor-signaling-in-lymphoma
#10
Laura Jacobs, Stefan Habringer, Jolanta Slawska, Katharina Huber, Elke Hauf, Zhoulei Li, Yosef Refaeli, Markus Schwaiger, Martina Rudelius, Axel Walch, Ulrich Keller
Aberrant B-cell receptor (BCR) signaling is known to contribute to malignant transformation. Two small molecule inhibitors targeting BCR pathway signaling include ibrutinib, a Bruton's tyrosine kinase (BTK) inhibitor, and idelalisib, a specific Phosphatidylinositol-4,5-bisphosphate 3-kinase delta (PI3Kδ) inhibitor, both of which have been approved for use in haematological malignancies. Despite the identification of various diffuse large B-cell lymphoma (DLBCL) subtypes, mutation status alone is not sufficient to predict patient response and therapeutic resistance can arise...
October 3, 2017: Oncotarget
https://www.readbyqxmd.com/read/29105220/correlative-mass-spectrometry-imaging-applying-tof-sims-and-ap-maldi-to-a-single-tissue-section
#11
N Desbenoit, A Walch, B Spengler, A Brunelle, A Römpp
RATIONALE: Mass spectrometry imaging (MSI) is a powerful tool for mapping the surface of a sample. Time-of-Flight Secondary Ion Mass Spectrometry (TOF-SIMS) and Atmospheric Pressure Matrix-Assisted Laser Desorption/Ionization (AP-MALDI) offer complementary capabilities. Here, we present a workflow to apply both techniques to a single tissue section and combine the resulting data on the example of human colon cancer tissue. METHODS: Following cryo-sectioning, images were acquired using the high spatial resolution (1 μm pixel size) provided by TOF-SIMS...
November 3, 2017: Rapid Communications in Mass Spectrometry: RCM
https://www.readbyqxmd.com/read/29097697/3d-maldi-mass-spectrometry-imaging-of-a-single-cell-spatial-mapping-of-lipids-in-the-embryonic-development-of-zebrafish
#12
Maria Emilia Dueñas, Jeffrey J Essner, Young Jin Lee
The zebrafish (Danio rerio) has been widely used as a model vertebrate system to study lipid metabolism, the roles of lipids in diseases, and lipid dynamics in embryonic development. Here, we applied high-spatial resolution matrix-assisted laser desorption/ionization (MALDI)-mass spectrometry imaging (MSI) to map and visualize the three-dimensional spatial distribution of phospholipid classes, phosphatidylcholine (PC), phosphatidylethanolamines (PE), and phosphatidylinositol (PI), in newly fertilized individual zebrafish embryos...
November 2, 2017: Scientific Reports
https://www.readbyqxmd.com/read/29096171/considerations-for-effect-site-pharmacokinetics-to-estimate-drug-exposure-concentrations-of-antibiotics-in-the-lung
#13
REVIEW
Keith A Rodvold, William W Hope, Sara E Boyd
Bronchoalveolar lavage (BAL) and microdialysis have become the most reliable and relevant methods for measuring lung concentrations of antibiotics, with the majority of BAL studies involving either healthy adult subjects or patients undergoing diagnostic bronchoscopy. Emphasis on the amount of drug that reaches the site of infection is increasingly recognized as necessary to determine whether a dose selection will translate to good clinical outcomes in the treatment of patients with pneumonia. Observed concentrations and/or parameters of exposure (e...
October 30, 2017: Current Opinion in Pharmacology
https://www.readbyqxmd.com/read/29095596/1-6-diphenyl-1-3-5-hexatriene-dph-as-a-novel-matrix-for-maldi-ms-imaging-of-fatty-acids-phospholipids-and-sulfatides-in-brain-tissues
#14
Hanadi Ibrahim, Kristina Jurcic, Jasmine S-H Wang, Shawn Narain Whitehead, Ken K-C Yeung
1,6-Diphenyl-1,3,5-hexatriene (DPH) is a commonly-used fluorescence probe for studying cell membrane-lipids due to its affinity towards the acyl chains in the phospholipid bilayers. In this work, we investigated its use in matrix-assisted laser desorption/ionization (MALDI) as a new matrix for mass spectrometry imaging (MSI) of mouse and rat brain tissue. DPH exhibits very minimal matrix-induced background signals for the analysis of small molecules (below m/z of 1000). In the negative ion mode, DPH permits the highly sensitive detection of small fatty acids (m/z 200 to 350) as well as a variety of large lipids up to m/z of 1000, including lyso-phospholipid, phosphatidic acid (PA), phosphoethanolamine (PE), phosphatidylserine (PS), phosphatidylglycerol (PG), phosphatidylinositol (PI), and sulfatides (ST)...
November 2, 2017: Analytical Chemistry
https://www.readbyqxmd.com/read/29093291/characterization-of-selenium-species-in-the-shijimi-clam
#15
Sakura Yoshida, Kaori Koga, Miho Iwataka, Takeshi Fuchigami, Mamoru Haratake, Morio Nakayama
Selenium is an essential trace element for humans and animals. Fish and shellfish are known to be rich in selenium and suppose to be an effective selenium source. In this study, we characterized the selenium species in the Shijimi clam (Corbicula japonica), which is a typical clam eaten in Japan. The Shijimi clam contains a relatively high concentration of selenium (3.5 µg-selenium/g-dry Shijimi). Approximately 30% of the total selenium in the Shijimi clam meat was extractable with water, while selenium in the Shijimi clam was hardly extracted with ethanol, chloroform and hexane...
2017: Chemical & Pharmaceutical Bulletin
https://www.readbyqxmd.com/read/29091994/quantifying-biological-samples-using-linear-poisson-independent-component-analysis-for-maldi-tof-mass-spectra
#16
S Deepaisarn, P D Tar, N A Thacker, A Seepujak, A W McMahon
Motivation: Matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI) facilitates the analysis of large organic molecules. However, the complexity of biological samples and MALDI data acquisition leads to high levels of variation, making reliable quantification of samples difficult. We present a new analysis approach that we believe is well-suited to the properties of MALDI mass spectra, based upon an Independent Component Analysis derived for Poisson sampled data...
October 28, 2017: Bioinformatics
https://www.readbyqxmd.com/read/29058228/maldi-imaging-mass-spectrometry-of-n-glycans-and-tryptic-peptides-from-the-same-formalin-fixed-paraffin-embedded-tissue-section
#17
Peggi M Angel, Anand Mehta, Kim Norris-Caneda, Richard R Drake
Matrix-assisted laser desorption/ionization (MALDI) imaging mass spectrometry (IMS) is a unique and well developed tool for probing the protein content of formalin-fixed, paraffin-embedded tissue (FFPE). Integral to this approach is the application of trypsin, and more recently peptide N-glycosidase F, to release tryptic peptides or N-glycans from tissue and report localization of distinct species. This is typically done on serial or adjacent tissue sections, and there is an emerging need to understand the colocalized protein population linked to the exact same regions of N-glycans...
October 21, 2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/29042321/multimodal-imaging-approach-to-examine-biodistribution-kinetics-of-cabotegravir-gsk1265744-long-acting-parenteral-formulation-in-rat
#18
Beat M Jucker, Hasan Alsaid, Mary Rambo, Stephen C Lenhard, Bao Hoang, Fang Xie, M Reid Groseclose, Stephen Castellino, Valeriu Damian, Gary Bowers, Manish Gupta
Long-Acting Parenterals (LAPs) have been used in the clinic to provide sustained therapeutic drug levels at a target site, and thereby reducing the frequency of dosing required. In an effort to understand the factors associated with long-acting cabotegravir (GSK1265744 LAP) pharmacokinetic variability, the current study was designed to investigate the temporal relationship between intramuscular (IM) or subcutaneous (SC) drug depot morphology and distribution kinetics with plasma pharmacokinetics. Therefore, a multi-modal molecular imaging (MRI & MALDI IMS) approach was employed to examine the temporal GSK1265744 LAP biodistribution in rat following either IM or SC administration...
October 16, 2017: Journal of Controlled Release: Official Journal of the Controlled Release Society
https://www.readbyqxmd.com/read/29037261/distinct-deposition-of-amyloid-%C3%AE-species-in-brains-with-alzheimer-s-disease-pathology-visualized-with-maldi-imaging-mass-spectrometry
#19
Nobuto Kakuda, Tomohiro Miyasaka, Noriyuki Iwasaki, Takashi Nirasawa, Satoko Wada-Kakuda, Junko Takahashi-Fujigasaki, Shigeo Murayama, Yasuo Ihara, Masaya Ikegawa
Amyloid β (Aβ) deposition in the brain is an early and invariable feature of Alzheimer's disease (AD). The Aβ peptides are composed of about 40 amino acids and are generated from amyloid precursor proteins (APP), by β- and γ-secretases. The distribution of individual Aβ peptides in the brains of aged people, and those suffering from AD and cerebral amyloid angiopathy (CAA), is not fully characterized. We employed the matrix-assisted laser desorption/ionization-imaging mass spectrometry (MALDI-IMS) to illustrate the spatial distribution of a broad range of Aβ species in human autopsied brains...
October 16, 2017: Acta Neuropathologica Communications
https://www.readbyqxmd.com/read/29035378/molecular-similarities-and-differences-from-human-pulmonary-fibrosis-and-corresponding-mouse-model-maldi-imaging-mass-spectrometry-in-comparative-medicine
#20
Michaela Aichler, Thomas Kunzke, Achim Buck, Na Sun, Maximilian Ackermann, Danny Jonigk, Andreas Gaumann, Axel Walch
Animal models can reproduce some model-specific aspects of human diseases, but some animal models translate poorly or fail to translate to the corresponding human disease. Here, we develop a strategy to systematically compare human and mouse tissues, and conduct a proof-of-concept experiment to identify molecular similarities and differences using patients with idiopathic pulmonary fibrosis and a bleomycin-induced fibrosis mouse model. Our novel approach employs high-throughput tissue microarrays (TMAs) of humans and mice, high-resolution matrix-assisted laser desorption/ionization-Fourier transform-ion cyclotron resonance-mass spectrometry imaging (MALDI-FT-ICR-MSI) to spatially resolve mass spectra at the level of specific metabolites, and hierarchical clustering and pathway enrichment analysis to identify functionally similar/different molecular patterns and pathways in pathological lesions of humans and mice...
October 16, 2017: Laboratory Investigation; a Journal of Technical Methods and Pathology
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