keyword
https://read.qxmd.com/read/38652740/out-of-equilibrium-interactions-and-collective-locomotion-of-colloidal-spheres-with-squirming-of-nematoelastic-multipoles
#1
JOURNAL ARTICLE
Bohdan Senyuk, Jin-Sheng Wu, Ivan I Smalyukh
Many living and artificial systems show similar emergent behavior and collective motions on different scales, starting from swarms of bacteria to synthetic active particles, herds of mammals, and crowds of people. What all these systems often have in common is that new collective properties like flocking emerge from interactions between individual self-propelled or driven units. Such systems are naturally out-of-equilibrium and propel at the expense of consumed energy. Mimicking nature by making self-propelled or externally driven particles and studying their individual and collective motility may allow for deeper understanding of physical underpinnings behind collective motion of large groups of interacting objects or beings...
April 30, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38652712/hgclamir-hypergraph-contrastive-learning-with-attention-mechanism-and-integrated-multi-view-representation-for-predicting-mirna-disease-associations
#2
JOURNAL ARTICLE
Dong Ouyang, Yong Liang, Jinfeng Wang, Le Li, Ning Ai, Junning Feng, Shanghui Lu, Shuilin Liao, Xiaoying Liu, Shengli Xie
Existing studies have shown that the abnormal expression of microRNAs (miRNAs) usually leads to the occurrence and development of human diseases. Identifying disease-related miRNAs contributes to studying the pathogenesis of diseases at the molecular level. As traditional biological experiments are time-consuming and expensive, computational methods have been used as an effective complement to infer the potential associations between miRNAs and diseases. However, most of the existing computational methods still face three main challenges: (i) learning of high-order relations; (ii) insufficient representation learning ability; (iii) importance learning and integration of multi-view embedding representation...
April 2024: PLoS Computational Biology
https://read.qxmd.com/read/38652390/a-prospective-multimodal-education-intervention-for-providers-does-not-increase-hepatic-encephalopathy-treatment-rates
#3
JOURNAL ARTICLE
Patrick A Twohig, Thoetchai Bee Peeraphatdit, Kaeli Samson, Makayla Schissel, Lynette Smith, Allison Ashford, Laura Freese, Timothy McCashland
BACKGROUND: Over 50% of hospitalizations from hepatic encephalopathy (HE) are preventable, but patients often do not receive medical treatment. AIMS: To use a multimodal education intervention (MMEI) to increase HE treatment rates and to evaluate (1) trends in HE treatment, (2) predictors of receiving treatment, and (3) the impact of treatment on hospitalization outcomes. METHODS: Prospective single-center cohort study of patients hospitalized with HE from April 1, 2020-September 30, 2022...
April 23, 2024: Digestive Diseases and Sciences
https://read.qxmd.com/read/38652055/multiscale-simulations-of-self-assembling-peptides-surface-and-core-hydrophobicity-determine-fibril-stability-and-amyloid-aggregation
#4
JOURNAL ARTICLE
Aysenur Iscen, Kübra Kaygisiz, Christopher V Synatschke, Tanja Weil, Kurt Kremer
Assemblies of peptides and proteins through specific intermolecular interactions set the basis for macroscopic materials found in nature. Peptides provide easily tunable hydrogen-bonding interactions, which can lead to the formation of ordered structures such as highly stable β-sheets that can form amyloid-like supramolecular peptide nanofibrils (PNFs). PNFs are of special interest, as they could be considered as mimics of various fibrillar structures found in nature. In their ability to serve as supramolecular scaffolds, they could mimic certain features of the extracellular matrix to provide stability, interact with pathogens such as virions, and transduce signals between the outside and inside of cells...
April 23, 2024: Biomacromolecules
https://read.qxmd.com/read/38651969/availability-of-pesticide-treated-seeds-on-the-soil-surface-in-different-crops-and-countries-a-comprehensive-data-set-reflecting-modern-agronomic-practice
#5
JOURNAL ARTICLE
Jörg Hahne, Manousos Foudoulakis, Steven Kragten, Dennis Sprenger, Kai Ristau, Christian Dietrich, Magnus Wang
For plant protection products applied as seed treatments, the risk to birds and mammals possibly feeding on such treated seeds needs to be addressed in the EU, in order to register these products for commercial use. For this purpose, the European Food Safety Food Authority (EFSA) has provided guidance on how to execute such a risk assessment. The risk assessment follows a tiered approach. In the Tier 1 risk assessment of the EFSA guidance (2023), it is assumed that birds or mammals have ad libitum access to treated seeds and exclusively feed on treated seeds...
April 23, 2024: Integrated Environmental Assessment and Management
https://read.qxmd.com/read/38651836/machine-learning-for-experimental-reactivity-of-a-set-of-metal-clusters-toward-c-h-activation
#6
JOURNAL ARTICLE
Xi-Guan Zhao, Qi Yang, Ying Xu, Qing-Yu Liu, Zi-Yu Li, Xiao-Xiao Liu, Yan-Xia Zhao, Sheng-Gui He
Understanding the mechanisms of C-H activation of alkanes is a very important research topic. The reactions of metal clusters with alkanes have been extensively studied to reveal the electronic features governing C-H activation, while the experimental cluster reactivity was qualitatively interpreted case by case in the literature. Herein, we prepared and mass-selected over 100 rhodium-based clusters (Rh x V y O z - and Rh x Co y O z - ) to react with light alkanes, enabling the determination of reaction rate constants spanning six orders of magnitude...
April 23, 2024: Journal of the American Chemical Society
https://read.qxmd.com/read/38651777/-on-the-relationship-between-incestuousness-and-destructivity-some-reflection-from-an-expert-case
#7
JOURNAL ARTICLE
Cristiano Barbieri, Ignazio Grattagliano
INTRODUCTION: Incestuous behaviors are often placed in family constellations that are highly dysfunctional from the perspective of communication between members and also with regard to the roles and expectations held in the family. The expert case being presented reflects these characteristics. METHODS: Beginning with an expert case of particular interest with respect to incestuousness and destructibility, the authors report considerations from a clinical criminological and forensic psychological-psychiatric point of view on the link between the two item...
2024: Rivista di Psichiatria
https://read.qxmd.com/read/38651553/binaural-hearing-in-monaural-conductive-or-mixed-hearing-loss-fitted-with-unilateral-bonebridge
#8
JOURNAL ARTICLE
Andrea Canale, Anastasia Urbanelli, Roberto Albera, Maria Gragnano, Valerio Bordino, Giuseppe Riva, Eugenio Sportoletti Baduel, Andrea Albera
OBJECTIVE: To determine the benefits of binaural hearing rehabilitation in patients with monaural conductive or mixed hearing loss treated with a unilateral bone conduction implant (BCI). METHODS: This monocentric study includes 7 patients with monaural conductive or mixed hearing loss who underwent surgical implantation of a unilateral BCI (Bonebridge, Med-El). An ITA Matrix test was performed by each patient included in the study - without and with the BCI and in three different settings - to determine the summation effect, squelch effect and head shadow effect...
April 2024: Acta Otorhinolaryngologica Italica
https://read.qxmd.com/read/38651485/defining-self-management-for-solid-organ-transplantation-recipients-a-mixed-method-study
#9
JOURNAL ARTICLE
Katie Brunner, Lydia Weisschuh, Stefan Jobst, Christiane Kugler, Anne Rebafka
Patients with Solid Organ Transplantations (SOTx) face long-term lifestyle adaptations, psychological and social adjustments, and complex self-care regimes to maintain health post-transplant. Self-management (SM) skills represent important aspects of nursing communication with SOTx patients; however, there is potential for SM to be defined narrowly in terms of medication adherence. The study presented here collated the existing definitions in a mixed method review in order to identify SM attributes for this group (including those unique to this population)...
April 17, 2024: Nursing Reports
https://read.qxmd.com/read/38651460/control-of-dental-caries-in-children-and-adolescents-using-fluoride-an-overview-of-community-level-fluoridation-methods
#10
REVIEW
América Patricia Pontigo-Loyola, Martha Mendoza-Rodriguez, Rubén de la Rosa-Santillana, Maria Gracia Rivera-Pacheco, Horacio Islas-Granillo, Juan Fernando Casanova-Rosado, María de Lourdes Márquez-Corona, José de Jesús Navarrete-Hernández, Carlo Eduardo Medina-Solís, David J Manton
The maintenance of oral health is a crucial aspect of general well-being; however, a significant proportion of the worldwide population experiences a range of oral diseases. Dental caries is a highly prevalent non-communicable disease globally, especially in children and adolescents. Fluoride is involved in the control of dental caries, primarily by decreasing the critical pH for dental hard tissue dissolution and decreasing enamel solubility. Due to the substantial data supporting the efficacy of fluoride in controlling dental caries, many community-level fluoridation initiatives have been devised and executed as global public health preventive interventions...
March 27, 2024: Pediatric Reports
https://read.qxmd.com/read/38651027/the-transition-of-sociodemographic-and-substance-abuse-characteristics-pairwise-co-occurrences-and-factors-associated-with-polysubstance-use-among-us-adolescents-and-young-adults
#11
JOURNAL ARTICLE
Md Tareq Ferdous Khan, Shrabanti Mazumder, Md Habibur Rahman, Most Alina Afroz, Humayun Kiser, Mohammad Alfrad Nobel Bhuiyan
BACKGROUND: Substance abuse by adolescents and young adults is a major public health issue. This study aimed to (i) show the transition of sociodemographic and substance abuse characteristics from 1992 to 2017 among US adolescents and young adults, (ii) evaluate the likelihood of co-occurrence of substances, and (iii) identify significant sociodemographic characteristics in association with polysubstance abuse. METHODS: This study extracted data for adolescents and young adults from 1992 and 2017 Treatment Episode Data Set-Admission (TEDS-A) datasets...
February 2024: Addiction & Health
https://read.qxmd.com/read/38650605/syn-cpg-spacer-a-panel-web-app-for-synonymous-recoding-of-viral-genomes-with-cpg-dinucleotides
#12
JOURNAL ARTICLE
Aleksander Sulkowski, Clément Bouton, Chad Swanson
Vertebrate genomes contain lower than expected frequencies of the CpG dinucleotide. Consequently, many vertebrate viruses have evolved to mimic this composition, possibly in order to evade host antiviral defences (Greenbaum et al., 2008). For example, the antiviral protein ZAP binds CpGs in viral single stranded RNA with specific spacing requirements (Gonçalves-Carneiro et al., 2022), though CpGs are also likely depleted in viral genomes due to other selective pressures (Forni et al., 2023). Increasing CpG abundance by synonymous recoding could facilitate attenuation of viruses without compromising their epitope antigenicity by changing non-CpG codons to alternatives containing CpG without changing the overall amino acid sequence (Gonçalves-Carneiro et al...
April 3, 2024: Journal of Open Source Software
https://read.qxmd.com/read/38650348/multielement-detection-of-nonmetals-by-barium-based-post-icp-chemical-ionization-coupled-to-orbitrap-ms
#13
JOURNAL ARTICLE
Grace Hahm, Frenio A Redeker, Kaveh Jorabchi
Prevalence of F, Cl, S, P, Br, and I in pharmaceuticals and environmental contaminants has promoted standard-free quantitation using analyte-independent heteroatom responses in inductively coupled plasma (ICP)-MS. However, in-plasma ionization challenges and element-dependent isobaric interference removal methods have hampered the multielement nonmetal detection in ICP-MS. Here, we examine an alternative approach to enhance multielement detection capabilities. Analytes are introduced into an ICP leading to post-plasma formation of HF, HCl, H3 PO3 , H2 SO4 , HBr, and HI, which are then chemically ionized to BaF+ , BaCl+ , BaH2 PO3 + , BaHSO4 + , BaBr+ , and BaI+ via reactions with barium-containing ions supplied by a nanospray...
April 22, 2024: Journal of the American Society for Mass Spectrometry
https://read.qxmd.com/read/38649814/transplanted-sagebrush-wildlings-exhibit-higher-survival-than-greenhouse-grown-tubelings-yet-both-recruit-new-plants
#14
JOURNAL ARTICLE
Elizabeth C Bailey, Eric Thacker, Thomas A Monaco, Kari E Veblen
BACKGROUND: Land uses such as crop production, livestock grazing, mining, and urban development have contributed to degradation of drylands worldwide. Loss of big sagebrush (Artemisia tridentata) on disturbed drylands across the western U.S. has prompted massive efforts to re-establish this foundational species. There has been growing interest in avoiding the severe limitations experienced by plants at the seed and seedling stages by instead establishing plants from containerized greenhouse seedlings ("tubelings")...
April 22, 2024: BMC ecology and evolution
https://read.qxmd.com/read/38648892/revisiting-alpha-resting-state-dynamics-underlying-hallucinatory-vulnerability-insights-from-hidden-semi-markov-modeling
#15
JOURNAL ARTICLE
H Honcamp, M Schwartze, M Amorim, D E J Linden, A P Pinheiro, S A Kotz
BACKGROUND: Resting state (RS) brain activity is inherently non-stationary. Hidden Semi-Markov Models (HsMM) can characterize continuous RS data as a sequence of recurring and distinct brain states along with their spatio-temporal dynamics. NEW METHOD: Recent explorations suggest that HsMM state dynamics in the alpha frequency band link to auditory hallucination proneness (HP) in non-clinical individuals. The present study aimed to replicate these findings to elucidate robust neural correlates of hallucinatory vulnerability...
April 20, 2024: Journal of Neuroscience Methods
https://read.qxmd.com/read/38648125/high-order-neighbors-aware-representation-learning-for-knowledge-graph-completion
#16
JOURNAL ARTICLE
Hong Yin, Jiang Zhong, Rongzhen Li, Jiaxing Shang, Chen Wang, Xue Li
As a building block of knowledge acquisition, knowledge graph completion (KGC) aims at inferring missing facts in knowledge graphs (KGs) automatically. Previous studies mainly focus on graph convolutional network (GCN)-based KG embedding (KGE) to determine the representations of entities and relations, accordingly predicting missing triplets. However, most existing KGE methods suffer from limitations in predicting tail entities that are far away or even unreachable in KGs. This limitation can be attributed to the related high-order information being largely ignored...
April 22, 2024: IEEE Transactions on Neural Networks and Learning Systems
https://read.qxmd.com/read/38648077/orderly-data-sets-and-benchmarks-for-chemical-reaction-data
#17
JOURNAL ARTICLE
Daniel S Wigh, Joe Arrowsmith, Alexander Pomberger, Kobi C Felton, Alexei A Lapkin
Machine learning has the potential to provide tremendous value to life sciences by providing models that aid in the discovery of new molecules and reduce the time for new products to come to market. Chemical reactions play a significant role in these fields, but there is a lack of high-quality open-source chemical reaction data sets for training machine learning models. Herein, we present ORDerly, an open-source Python package for the customizable and reproducible preparation of reaction data stored in accordance with the increasingly popular Open Reaction Database (ORD) schema...
April 22, 2024: Journal of Chemical Information and Modeling
https://read.qxmd.com/read/38647987/joint-eurados-eanm-initiative-for-an-advanced-computational-framework-for-the-assessment-of-external-dose-rates-from-nuclear-medicine-patients
#18
JOURNAL ARTICLE
Lara Struelens, Christelle Huet, David Broggio, Jérémie Dabin, Laurent Desorgher, Augusto Giussani, Wei Bo Li, Dietmar Nosske, Yi-Kang Lee, Lidia Cunha, Maria J R Carapinha, Mario Medvedec, Peter Covens
BACKGROUND: In order to ensure adequate radiation protection of critical groups such as staff, caregivers and the general public coming into proximity of nuclear medicine (NM) patients, it is necessary to consider the impact of the radiation emitted by the patients during their stay at the hospital or after leaving the hospital. Current risk assessments are based on ambient dose rate measurements in a single position at a specified distance from the patient and carried out at several time points after administration of the radiopharmaceutical to estimate the whole-body retention...
April 22, 2024: EJNMMI Physics
https://read.qxmd.com/read/38647715/electronic-structure-and-optical-properties-of-nitrogen-doped-antimonene-under-biaxial-strain-first-principles-study
#19
JOURNAL ARTICLE
Ran Wei, Guili Liu, Shaoran Qian, Dan Su, Guoying Zhang
CONTENT: In this thesis, the role of N atom doping and biaxial strain in modulating the electronic structure and optical properties of antimonene has been deeply investigated using a first-principles approach based on density-functional theory. The results show that N doping significantly reduces the band gap of antimonene and introduces new electronic states, thus affecting its electronic structure. In terms of optical properties, N doping reduces the static permittivity of antimonene and alters its absorption, reflection, and energy loss properties...
April 22, 2024: Journal of Molecular Modeling
https://read.qxmd.com/read/38646932/testing-and-optimizing-metabarcoding-of-idna-from-dung-beetles-to-sample-mammals-in-the-hyperdiverse-neotropics
#20
JOURNAL ARTICLE
Bruno H Saranholi, Filipe M França, Alfried P Vogler, Jos Barlow, Fernando Z Vaz de Mello, Maria E Maldaner, Edrielly Carvalho, Carla C Gestich, Benjamin Howes, Cristina Banks-Leite, Pedro M Galetti
Over the past few years, insects have been used as samplers of vertebrate diversity by assessing the ingested-derived DNA (iDNA), and dung beetles have been shown to be a good mammal sampler given their broad feeding preference, wide distribution and easy sampling. Here, we tested and optimized the use of iDNA from dung beetles to assess the mammal community by evaluating if some biological and methodological aspects affect the use of dung beetles as mammal species samplers. We collected 403 dung beetles from 60 pitfall traps...
April 22, 2024: Molecular Ecology Resources
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