keyword
https://read.qxmd.com/read/38179538/a-high-spin-alkylperoxo-iron-iii-complex-with-cis-anionic-ligands-implications-for-the-superoxide-reductase-mechanism
#21
JOURNAL ARTICLE
Tarali Devi, Kuheli Dutta, Jennifer Deutscher, Stefan Mebs, Uwe Kuhlmann, Michael Haumann, Beatrice Cula, Holger Dau, Peter Hildebrandt, Kallol Ray
The N3 O macrocycle of the 12-TMCO ligand stabilizes a high spin ( S = 5/2) [FeIII (12-TMCO)(OO t Bu)Cl]+ (3-Cl) species in the reaction of [FeII (12-TMCO)(OTf)2 ] (1-(OTf)2 ) with tert -butylhydroperoxide ( t BuOOH) in the presence of tetraethylammonium chloride (NEt4 Cl) in acetonitrile at -20 °C. In the absence of NEt4 Cl the oxo-iron(iv) complex 2 [FeIV (12-TMCO)(O)(CH3 CN)]2+ is formed, which can be further converted to 3-Cl by adding NEt4 Cl and t BuOOH. The role of the cis -chloride ligand in the stabilization of the FeIII -OO t Bu moiety can be extended to other anions including the thiolate ligand relevant to the enzyme superoxide reductase (SOR)...
January 3, 2024: Chemical Science
https://read.qxmd.com/read/38145763/novel-cytochrome-p450s-for-various-hydroxylation-of-steroids-from-filamentous-fungi
#22
JOURNAL ARTICLE
Guojuan Yi, Hanlu Zou, Tao Long, Tolbert Osire, Lin Wang, Xiaoyun Wei, Mengfei Long, Zhiming Rao, Guojian Liao
Hydroxylated steroids are value-added products with diverse biological activities mediated by cytochrome P450 enzymes, however, few has been thoroughly characterized in fungi. This study introduces a rapid identification strategy for filamentous fungi P450 enzymes through transcriptome and bioinformatics analysis. Five novel enzymes (CYP68J5, CYP68L10, CYP68J3, CYP68N1 and CYP68N3) were identified and characterized in Saccharomyces cerevisiae or Aspergillus oryzae. Molecular docking and dynamics simulations were employed to elucidate hydroxylation preferences of CYP68J5 (11α, 7α bihydroxylase) and CYP68N1 (11α hydroxylase)...
December 23, 2023: Bioresource Technology
https://read.qxmd.com/read/38141230/activation-of-coq6p-a-fad-monooxygenase-involved-in-coenzyme-q-biosynthesis-by-adrenodoxin-reductase-ferredoxin
#23
JOURNAL ARTICLE
Lucie Gonzalez, Samuel Chau-Duy Tam Vo, Bruno Faivre, Fabien Pierrel, Marc Fontecave, Djemel Hamdane, Murielle Lombard
Adrenodoxin reductase (AdxR) plays a pivotal role in electron transfer, shuttling electrons between NADPH and iron/sulfur adrenodoxin proteins in mitochondria. This electron transport system is essential for P450 enzymes involved in various endogenous biomolecules biosynthesis. Here, we present an in-depth examination of the kinetics governing the reduction of human AdxR by NADH or NADPH. Our results highlight the efficiency of human AdxR when utilizing NADPH as a flavin reducing agent. Nevertheless, akin to related flavoenzymes such as cytochrome P450 reductase, we observe that low NADPH concentrations hinder flavin reduction due to intricate equilibrium reactions between the enzyme and its substrate/product...
December 23, 2023: Chembiochem: a European Journal of Chemical Biology
https://read.qxmd.com/read/38139084/identification-of-a-gene-encoding-a-new-fungal-steroid-7-hydroxylase-and-its-functional-characterization-in-pichia-pastoris-yeast
#24
JOURNAL ARTICLE
Vyacheslav Kollerov, Sergey Tarlachkov, Andrei Shutov, Alexey Kazantsev, Marina Donova
The hydroxylation of steroids in the C7β position is one of the rare reactions that allow the production of value-added precursors in the synthesis of ursodeoxycholic acid and other pharmaceuticals. Recently, we discovered this activity in the ascomycete Curvularia sp. VKM F-3040. In this study, the novel gene of 7-hydroxylase (P450cur ) was identified as being heterologously expressed and functionally characterized in Pichia pastoris . Transcriptome data mining and differential expression analysis revealed that 12 putative genes in Curvularia sp...
December 8, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/38136599/exploring-novel-variants-of-the-cytochrome-p450-reductase-gene-por-from-the-genome-aggregation-database-by-integrating-bioinformatic-tools-and-functional-assays
#25
JOURNAL ARTICLE
Maria Natalia Rojas Velazquez, Søren Therkelsen, Amit V Pandey
Cytochrome P450 oxidoreductase (POR) is an essential redox partner for steroid and drug-metabolizing cytochromes P450 located in the endoplasmic reticulum. Mutations in POR lead to metabolic disorders, including congenital adrenal hyperplasia, and affect the metabolism of steroids, drugs, and xenobiotics. In this study, we examined approximately 450 missense variants of the POR gene listed in the Genome Aggregation Database (gnomAD) using eleven different in silico prediction tools. We found that 64 novel variants were consistently predicted to be disease-causing by most tools...
November 30, 2023: Biomolecules
https://read.qxmd.com/read/38098801/rewiring-saccharomyces-cerevisiae-metabolism-for-optimised-taxol%C3%A2-precursors-production
#26
JOURNAL ARTICLE
Behnaz Nowrouzi, Pablo Torres-Montero, Eduard J Kerkhoven, José L Martínez, Leonardo Rios-Solis
Saccharomyces cerevisiae has been conveniently used to produce Taxol® anticancer drug early precursors. However, the harmful impact of oxidative stress by the first cytochrome P450-reductase enzymes (CYP725A4-POR) of Taxol® pathway has hampered sufficient progress in yeast. Here, we evolved an oxidative stress-resistant yeast strain with three-fold higher titre of their substrate, taxadiene. The performance of the evolved and parent strains were then evaluated in galactose-limited chemostats before and under the oxidative stress by an oxidising agent...
June 2024: Metabolic Engineering Communications
https://read.qxmd.com/read/38078109/comparative-gut-proteomics-study-revealing-adaptive-physiology-of-eurasian-spruce-bark-beetle-ips-typographus-coleoptera-scolytinae
#27
JOURNAL ARTICLE
Muhammad Zubair Ashraf, Kanakachari Mogilicherla, Gothandapani Sellamuthu, Valentina Siino, Fredrik Levander, Amit Roy
The bark beetle, Ips typographus (L.), is a major pest of Norway spruce, Picea abies (L.), causing enormous economic losses globally. The adult stage of the I. typographus has a complex life cycle (callow and sclerotized); the callow beetles feed ferociously, whereas sclerotized male beetles are more aggressive and pioneers in establishing new colonies. We conducted a comparative proteomics study to understand male and female digestion and detoxification processes in callow and sclerotized beetles. Proteome profiling was performed using high-throughput liquid chromatography-mass spectrometry...
2023: Frontiers in Plant Science
https://read.qxmd.com/read/38060561/tryptophan-extends-the-life-of-cytochrome-p450
#28
JOURNAL ARTICLE
Raheleh Ravanfar, Yuling Sheng, Harry B Gray, Jay R Winkler
Powerfully oxidizing enzymes need protective mechanisms to prevent self-destruction. The flavocytochrome P450 BM3 from Priestia megaterium (P450BM3 ) is a self-sufficient monooxygenase that hydroxylates fatty acid substrates using O2 and NADPH as co-substrates. Hydroxylation of long-chain fatty acids (≥C14 ) is well coupled to O2 and NADPH consumption, but shorter chains (≤C12 ) are more poorly coupled. Hydroxylation of p -nitrophenoxydodecanoic acid by P450BM3 produces a spectrophotometrically detectable product wherein the coupling of NADPH consumption to product formation is just 10%...
December 12, 2023: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38047781/late-microaerobic-growth-for-efficient-production-of-human-cytochrome-p450-3a4-in-e-coli
#29
JOURNAL ARTICLE
Luca Marchetti, Matteo Planchestainer, Sven Panke, Martin Held
Detailed preclinical characterization of metabolites formed in vivo from candidate drug substances is mandatory prior to the initiation of clinical trials. Therefore, inexpensive and efficient methods for drug metabolite synthesis are of high importance for rapid advancement of the drug development process. A large fraction of small molecule drugs is modified by monooxygenase cytochrome P450 3A4 produced in the human liver and intestine. Therefore, this enzyme is frequently employed to catalyze metabolite synthesis in vitro, making 3A4 availability a critical requirement in early drug development...
June 28, 2023: Chimia
https://read.qxmd.com/read/38043491/the-discovery-of-aryl-2-nitroethyl-triamino-pyrimidines-as-anti-trypanosoma-brucei-agents
#30
JOURNAL ARTICLE
Pasquale Linciano, Cecilia Pozzi, Giusy Tassone, Giacomo Landi, Stefano Mangani, Matteo Santucci, Rosaria Luciani, Stefania Ferrari, Nuno Santarem, Lorenzo Tagliazucchi, Anabela Cordeiro-da-Silva, Michele Tonelli, Donatella Tondi, Laura Bertarini, Sheraz Gul, Gesa Witt, Carolina B Moraes, Luca Costantino, Maria Paola Costi
Pteridine reductase 1 (PTR1) is a catalytic protein belonging to the folate metabolic pathway in Trypanosmatidic parasites. PTR1 is a known target for the medicinal chemistry development of antiparasitic agents against Trypanosomiasis and Leishmaniasis. In previous studies, new nitro derivatives were elaborated as PTR1 inhibitors. The compounds showing a diamino-pyrimidine core structure were previously developed but they showed limited efficacy. Therefore, a new class of phenyl-, heteroaryl- and benzyloxy-nitro derivatives based on the 2-nitroethyl-2,4,6-triaminopyrimidine scaffold were designed and tested...
November 11, 2023: European Journal of Medicinal Chemistry
https://read.qxmd.com/read/38016103/a-major-role-of-coumarin-dependent-ferric-iron-reduction-in-strategy-i-type-iron-acquisition-in-arabidopsis
#31
JOURNAL ARTICLE
Vanessa Paffrath, Yudelsy A Tandron Moya, Günther Weber, Nicolaus von Wirén, Ricardo F H Giehl
Many non-graminaceous species release various coumarins in response to iron (Fe) deficiency. However, the physiological relevance of these coumarins remains poorly understood. Here, we show that the three enzymes leading to sideretin biosynthesis co-exist in Arabidopsis (Arabidopsis thaliana) epidermal and cortical cells and that the shift to fraxetin at alkaline pH depends on MYB72-mediated repression of CYTOCHROME P450, FAMILY 82, SUBFAMILY C, POLYPEPTIDE 4 (CYP82C4). In vitro, only fraxetin and sideretin can reduce part of the Fe(III) that they mobilize...
November 28, 2023: Plant Cell
https://read.qxmd.com/read/37994522/enlighting-electron-routes-in-oxyfunctionalizing-synechocystis-sp-pcc-6803
#32
JOURNAL ARTICLE
Adrian Tüllinghoff, Jörg Toepel, Bruno Bühler
Phototrophic microorganisms, like cyanobacteria, are gaining attention as host organisms for biocatalytic processes with light as energy source and water as electron source. Redox enzymes, especially oxygenases, can profit from in-situ supply of co-substrates, i.e., reduction equivalents and O2, by the photosynthetic light reaction. The electron transfer downstream of PS I to heterologous electron consuming enzymes in principle can involve NADPH, NADH, and/or ferredoxin, whereas most direct and efficient transfer is desirable...
November 23, 2023: Chembiochem: a European Journal of Chemical Biology
https://read.qxmd.com/read/37989968/genomic-dissection-of-niallia-sp-for-potential-application-in-lignocellulose-hydrolysis-and-bioremediation
#33
JOURNAL ARTICLE
Shweta Srivastava, Nishant A Dafale
Genus Niallia has recently been separated taxonomic group from the Bacillus based on conserved signature indels in the genome. Unlike bioremediation, its role in plant biomass hydrolysis has not garnered considerable attention. The present study investigates the genomic potential of a novel Niallia sp. CRN 25 for applications in lignocellulose hydrolysis, significant enzyme production, and bioremediation. The CRN 25 strain exhibits xylosidase, cellobiosidase, α-arabinosidase, and α-D-galactosidase activity as 0...
November 21, 2023: Archives of Microbiology
https://read.qxmd.com/read/37979917/mapping-interactions-of-calmodulin-and-neuronal-no-synthase-by-crosslinking-and-mass-spectrometry
#34
JOURNAL ARTICLE
Dana Felker, Kanghyun Lee, Thomas H Pospiech, Yoshihiro Morishima, Haoming Zhang, Miranda Lau, Daniel Southworth, Yoichi Osawa
Neuronal nitric oxide synthase (nNOS) is a homodimeric cytochrome P450-like enzyme that catalyzes the conversion of L-arginine to nitric oxide in the presence of NADPH and molecular oxygen. The binding of calmodulin (CaM) to a linker region between the FAD/FMN containing reductase domain and the heme containing oxygenase domain is needed for electron transfer reactions, reduction of the heme, and NO synthesis. Due to the dynamic nature of the reductase domain and low resolution of available full-length structures, the exact conformation of the CaM-bound active complex during heme reduction is still unresolved...
November 16, 2023: Journal of Biological Chemistry
https://read.qxmd.com/read/37977738/self-sufficient-p450-reductase-chimeras-for-biocatalysis
#35
JOURNAL ARTICLE
Carter N Stout, Hans Renata
In recent years, cytochromes P450 have emerged as powerful, versatile biocatalysts for the site-selective functionalization of small molecules. Catalyzing an impressive range of chemical transformations, these enzymes have been widely used to effect C-H oxidation, biaryl coupling, and carbon-heteroatom bond formation, among many other reactions. However, the majority of P450s are multi-protein systems that employ secondary redox partners in key steps of the catalytic cycle, which limits their broader applicability...
2023: Methods in Enzymology
https://read.qxmd.com/read/37977734/direct-aromatic-nitration-by-bacterial-p450-enzymes
#36
JOURNAL ARTICLE
Manyun Chen, Vanisa Petriti, Amit Mondal, Yujia Jiang, Yousong Ding
Nitro aromatics have broad applications in industry, agriculture, and pharmaceutics. However, their industrial production is faced with many challenges including poor selectivity, heavy pollution and safety concerns. Nature provides multiple strategies for aromatic nitration, which opens the door for the development of green and efficient biocatalysts. Our group's efforts focused on a unique bacterial cytochrome P450 TxtE that originates from the biosynthetic pathway of phytotoxin thaxtomins, which can install a nitro group at C4 of l-Trp indole ring...
2023: Methods in Enzymology
https://read.qxmd.com/read/37959828/cloning-and-functional-characterization-of-nadph-cytochrome-p450-reductases-in-aconitum-vilmorinianum
#37
JOURNAL ARTICLE
Jingping Cheng, Guodong Li, Xue Wang, Congwei Yang, Furong Xu, Zigang Qian, Xiaohui Ma
Diterpenoid alkaloids (DAs) are major pharmacologically active ingredients of Aconitum vilmorinianum , an important medicinal plant. Cytochrome P450 monooxygenases (P450s) are involved in the DA biosynthetic pathway, and the electron transfer reaction of NADPH-cytochrome P450 reductase (CPR) with P450 is the rate-limiting step of the P450 redox reaction. Here, we identified and characterized two homologs of CPR from Aconitum vilmorinianum . The open reading frames of AvCPR1 and AvCPR2 were found to be 2103 and 2100 bp, encoding 700 and 699 amino acid residues, respectively...
November 3, 2023: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://read.qxmd.com/read/37953511/kinetic-pharmacodynamic-model-of-warfarin-for-prothrombin-time-international-normalized-ratio-in-japanese-patients
#38
JOURNAL ARTICLE
Toshinori Hirai, Takahiko Aoyama, Yasuhiro Tsuji, Toshimasa Itoh, Yoshiaki Matsumoto, Takuya Iwamoto
AIM: Genotype-guided dosing algorithms can explain about half of the interindividual variability in prothrombin time-international normalized ratio (PT-INR) under warfarin treatment. This study aimed to refine a published kinetic-pharmacodynamic model and guide warfarin dosage for an optimal PT-INR based on renal function. METHODS: Using a retrospective cohort of adult patients (>20 years) who were administered warfarin and underwent PT-INR measurements, we refined the kinetic-pharmacodynamic model with age and the genotypes of cytochrome P450 2C9 and vitamin K epoxide reductase complex subunit 1 using the PRIOR subroutine in the nonlinear-mixed-effect modeling program...
November 12, 2023: British Journal of Clinical Pharmacology
https://read.qxmd.com/read/37946341/synthesis-and-structural-activity-relationship-study-of-ursolic-acid-derivatives-as-antitubercular-agent
#39
JOURNAL ARTICLE
Sadhna Vishwakarma, Santosh Kumar Srivastava, Naveen K Khare, Shiwa Chaubey, Vinita Chaturvedi, Priyanka Trivedi, Sana Khan, Feroz Khan
OBJECTIVE: The chemical transformation of ursolic acid (UA) into novel C-3 aryl ester derivatives and in vitro and silico assessment of their antitubercular potential. BACKGROUND: UA is a natural pentacyclic triterpenoid with many pharmacological properties. Semisynthetic UA analogs have demonstrated enhanced anticancer, antimalarial, and antifilarial properties in our previous studies. METHOD: The C-30 carboxylic group of previously isolated UA was protected, and various C-3 aryl ester derivatives were semi-synthesized...
November 7, 2023: Medicinal Chemistry
https://read.qxmd.com/read/37942052/integrated-mrna-and-small-rna-sequencing-reveals-post-transcriptional-regulation-of-the-sesquiterpene-pathway-in-santalum-album-l-indian-sandalwood
#40
JOURNAL ARTICLE
Chandramouli K Madhuvanthi, Eswaran Muthulakshmi, Modhumita Ghosh Dasgupta
KEY MESSAGE: In sandalwood, negative pattern of regulation by miRNAs was documented in key genes from the sesquiterpene pathway, with cytochrome P450 reductase showing maximum miRNA targets, followed by sesquisabianene synthase 1. ABSTRACT: A comprehensive knowledge of the molecular regulation of sesquiterpene biosynthetic pathway through transcriptomic studies is well established in Santalum album (Indian Sandalwood). However, the post-transcriptional regulation of the genes regulating the pathway is still elusive in this genus...
December 2023: 3 Biotech
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