keyword
https://read.qxmd.com/read/38490495/the-ancestral-selection-graph-for-a-%C3%AE-asymmetric-moran-model
#1
JOURNAL ARTICLE
Adrián González Casanova, Noemi Kurt, José Luis Pérez
Motivated by the question of the impact of selective advantage in populations with skewed reproduction mechanims, we study a Moran model with selection. We assume that there are two types of individuals, where the reproductive success of one type is larger than the other. The higher reproductive success may stem from either more frequent reproduction, or from larger numbers of offspring, and is encoded in a measure Λ for each of the two types. Λ-reproduction here means that a whole fraction of the population is replaced at a reproductive event...
March 13, 2024: Theoretical Population Biology
https://read.qxmd.com/read/38369459/periostin-bone-morphogenetic-protein-1-axis-axis-regulates-proliferation-and-osteogenic-differentiation-of-sutured-mesenchymal-stem-cells-and-affects-coronal-suture-closure-in-the-twist1-mouse-model-of-craniosynostosis
#2
JOURNAL ARTICLE
ShuBin Feng, Qiang Feng, LiuJian Dong, Qiang Lv, ShiYue Mei, YaoDong Zhang
BACKGROUND AND OBJECTIVE: The pathogenesis of coronal suture craniosynostosis is often attributed to the dysregulated cellular dynamics, particularly the excessive proliferation and abnormal osteogenic differentiation of suture cells. Despite its clinical significance, the molecular mechanims of this condition remain inadequately understood. This study is dedicated to exploring the influence of the Periostin/Bone Morphogenetic Protein 1 (BMP1) axis on the growth and osteogenic maturation of Suture Mesenchymal Stem Cells (SMSCs), which are pivotal in suture homeostasis...
February 19, 2024: Journal of Orthopaedic Surgery and Research
https://read.qxmd.com/read/38352468/-p-aeruginosa-trna-fmet-halves-secreted-in-outer-membrane-vesicles-suppress-lung-inflammation-in-cystic-fibrosis
#3
Zhongyou Li, Roxanna Barnaby, Amanda Nymon, Carolyn Roche, Katja Koeppen, Alix Ashare, Deborah A Hogan, Scott A Gerber, Douglas J Taatjes, Thomas H Hampton, Bruce A Stanton
UNLABELLED: Although tobramycin increases lung function in people with cystic fibrosis (pwCF), the density of Pseudomonas aeruginosa (P. aeruginosa) in the lungs is only modestly reduced by tobramycin; hence, the mechanism whereby tobramycin improves lung function is not completely understood. Here, we demonstrate that tobramycin increases 5' tRNA-fMet halves in outer membrane vesicles (OMVs) secreted by laboratory and CF clinical isolates of P. aeruginosa . The 5' tRNA-fMet halves are transferred from OMVs into primary CF human bronchial epithelial cells (CF-HBEC), decreasing OMV-induced IL-8 and IP-10 secretion...
February 3, 2024: bioRxiv
https://read.qxmd.com/read/37341821/runx1-eto-regulates-reactive-oxygen-species-ros-levels-in-t-8-21-acute-myeloid-leukaemia-via-flt3-and-rac1
#4
JOURNAL ARTICLE
Adam Azlan, Kang Zi Khor, Yaashini Rajasegaran, Aliaa Arina Rosli, Mohamed Saifulaman Mohamed Said, Narazah Mohd Yusoff, Emmanuel Jairaj Moses
Reactive oxygen species (ROS) homeostasis is crucial for leukaemogenesisand deregulation would hamper leukaemic progression. Although the regulatory effects of RUNX1/ETO has been extensively studied, its underlying molecular mechanims in ROS production in t(8,21) AML is yet to be fully elucidated. Here, we report that RUNX1/ETO could directly control FLT3 by occupying several DNA elements on FLT3 locus. The possible hijacking mechanism by RUNX1/ETO over FLT3 mediated ROS modulation in AML t(8;21) was made apparent when suppression of RUNX1/ETO led to decrement in ROS levels and the direct oxidative marker FOXO3 but not in FLT3 and RAC1 suppressed t(8,21) AML cell line Furthermore, nuclear import of RUNX1/ETO was aberrated following RUNX1/ETO and RAC1 suppression suggesting association in ROS control...
June 21, 2023: Medical Oncology
https://read.qxmd.com/read/36967443/phf6-recruits-bptf-to-promote-hif-dependent-pathway-and-progression-in-yap-high-breast-cancer
#5
JOURNAL ARTICLE
Sheng Gao, Wensheng Zhang, Jingjing Ma, Xiaojian Ni
BACKGROUND: Aberrant epigenetic remodeling events contribute to progression and metastasis of breast cancer (Bca). The specific mechanims that epigenetic factors rely on to mediate tumor aggressiveness remain unclear. We aimed to elucidate the roles of epigenetic protein PHF6 in breast tumorigenesis. METHODS: Published datasets and tissue samples with PHF6 staining were used to investigate the clinical relevance of PHF6 in Bca. CCK-8, clony formation assays were used to assess cell growth capacity...
March 26, 2023: Journal of Translational Medicine
https://read.qxmd.com/read/36711727/sirtuin-2-inhibition-modulates-chromatin-landscapes-genome-wide-to-induce-senescence-in-atrx-deficient-malignant-glioma
#6
Prit Benny Malgulwar, Carla Danussi, Sharvari Dharmaiah, William E Johnson, Arvind Rao, Jason T Huse
UNLABELLED: Inactivating mutations in ATRX characterize large subgroups of malignant gliomas in adults and children. ATRX deficiency in glioma induces widespread chromatin remodeling, driving transcriptional shifts and oncogenic phenotypes. Effective strategies to therapeutically target these broad epigenomic sequelae remain undeveloped. We utilized integrated mulit-omics and the Broad Institute Connectivity Map (CMAP) to identify drug candidates that could potentially revert ATRX-deficient transcriptional changes...
January 10, 2023: bioRxiv
https://read.qxmd.com/read/36301016/ammonia-synthesis-at-room-temperature-and-atmospheric-pressure-from-n2-a-boron-radical-approach
#7
JOURNAL ARTICLE
Soukaina Bennaamane, Barbara Rialland, Lhoussain Khrouz, Marie Fustier-Boutignon, Christophe Bucher, Eric Clot, Nicolas Mézailles
Ammonia, NH 3 , is an essential molecule, being part of fertilizers. It is currently synthesized via the Haber-Bosch process, from the very stable dinitrogen molecule, N 2 and dihydrogen, H 2 . This process requires high temperatures and pressures, thereby generating ca 1.6% of the global CO 2 emissions. Alternative strategies are needed to realize the functionalization of N 2 to NH 3 under mild conditions. Here, we show that boron-centered radicals provide a means of activating N 2 at room temperature and atmospheric pressure whilst allowing a radical process to occur, leading to the production of borylamines...
October 27, 2022: Angewandte Chemie
https://read.qxmd.com/read/36090733/vitamin-d-cytokine-profiles-and-disease-severity-in-infants-with-atopic-dermatitis-a-single-centre-cross-sectional-study
#8
JOURNAL ARTICLE
Wisnu Barlianto, Desy Wulandari, Tita Luthfia Sari, Vanisia Hayu Firdayanti, Muhammad Irvan Avandi
Introduction: Atopic dermatitis (AD) is an immune-mediated inflammatory skin disease and generally develops in infancy. Studies evaluating the role of vitamin D in immune mechanims in AD showed varying results. Aim: To assess the association between serum vitamin D, cytokine profiles, and disease severity in infants with AD. Material and methods: A cross-sectional study was conducted on infants aged 0-12 months with AD in the Paediatric Allergy and Immunology Department, Saiful Anwar Hospital, Indonesia...
August 2022: Postȩpy Dermatologii i Alergologii
https://read.qxmd.com/read/36060494/synthesis-and-application-of-titanium-dioxide-photocatalysis-for-energy-decontamination-and-viral-disinfection-a-review
#9
REVIEW
Jayaseelan Arun, S Nachiappan, Goutham Rangarajan, Ram Prasath Alagappan, K P Gopinath, Eric Lichtfouse
Global pollution is calling for advanced methods to remove contaminants from water and wastewater, such as TiO2 -assisted photocatalysis.  The environmental applications of titanium dioxide have started after the initial TiO2 application for water splitting by Fujishima and Honda in 1972. TiO2 is now used for self-cleaning surfaces, air and water purification systems, microbial inactivation and selective organic conversion. The synthesis of titanium dioxide nanomaterials with high photocatalytic activity is actually a major challenge...
August 27, 2022: Environmental Chemistry Letters
https://read.qxmd.com/read/35851128/-mechanism-of-zicui-decoction-in-treatment-of-diabetic-kidney-disease-based-on-network-pharmacology-and-molecular-docking
#10
JOURNAL ARTICLE
Li-Dong Gao, Jia Liu, Yu-Hong Huang, Bao-He Wang
This study aimed to explore the potential mechanism of Zicui Decoction in the treatment of diabetic kidney disease(DKD) based on network pharmacology and molecular docking. The DKD-related targets were searched from DrugBank, Therapeutic Target Database(TTD), Online Mendelian Inheritance in Man Database(OMIM), GeneCards, DisGeNET, Comparative Toxico-genomics Database(CTD), and PharmGKB. The targets of the serum active ingredients of Zicui Decoction were predicted from the SwissTargetPrediction. The obtained results were then mapped to harvest the potential targets of Zicui Decoction against DKD...
June 2022: Zhongguo Zhong Yao za Zhi, Zhongguo Zhongyao Zazhi, China Journal of Chinese Materia Medica
https://read.qxmd.com/read/34931421/isospecific-co-polymerization-of-unmasked-polar-styrenes-by-neutral-rare-earth-metal-catalysts
#11
JOURNAL ARTICLE
Yang Jiang, Zhen Zhang, Shihui Li, Dongmei Cui
Syndioselective polymerization of unprotected polar styrenes has achieved great success via specially designed catalysts and the establishment of "self-assisted" theory. In contrast, isospecific polymerization of polar styrenes has remained less explored. Herein, we present new racemic ansa-bis(benz[e]indenyl) rare-earth metal complexes and their high activity and perfect isoselectivity (mmmm>99 %) for the polymerization of unmasked polar styrenes without any activators. Moreover, the copolymerizations of para- and meta-methoxystyrenes with styrene give gradient and random copolymers, respectively...
February 21, 2022: Angewandte Chemie
https://read.qxmd.com/read/34333362/the-adjuvant-aluminum-fate-metabolic-tale-based-on-the-basics-of-chemistry-and-biochemistry
#12
REVIEW
Aleksandar Ćirović, Ana Ćirović, Dimitrije Nikolić, Ana Ivanovski, Petar Ivanovski
Aluminum is inevitable component of many vaccines. The benefit of the vaccines is undeniable but effects of aluminum toxicity might be underestimated and neglected. In this review, we highlighted the mechanims of aluminum toxicity, which is still in debate. So far, all the papers that disscused the adverse aluminum effects pointed two mechanisms responsible for Al toxicity, direct Al toxicity and aluminum induced cell damage via the oxidative metabolism. According to our knowledge, which is based on basic principles of biochemistry and inorganic chemistry, we suggested that aluminum highly interferes with iron metabolism eventually resulting in iron-mediated cell damage...
December 2021: Journal of Trace Elements in Medicine and Biology
https://read.qxmd.com/read/34330415/sex-drugs-and-anaesthesia-research
#13
EDITORIAL
Olivia A Moody, Kathleen F Vincent, Ken Solt
In this issue of the British Journal of Anaesthesia, Joksimovic and colleagues report significant sex differences in sensitivity to the behavioural and neurophysiological effects of 3β-OH, a novel neurosteroid anesthetic. Female rats were more sensitive to the effects of 3β-OH than male rats, although the mechanims remain unclear. Sex differences have been understudied in anaesthesia research, and this article by Joksimovic and colleagues emphasizes the need to devote more effort to understanding these differences...
September 2021: British Journal of Anaesthesia
https://read.qxmd.com/read/34289313/-acinetobacter-defence-mechanisms-against-biological-aggressors-and-their-use-as-alternative-therapeutic-applications
#14
JOURNAL ARTICLE
María Marcela Cameranesi, Daniel Kurth, Guillermo Daniel Repizo
Several Acinetobacter strains are important nosocomial pathogens, with Acinetobacter baumannii being the species of greatest worldwide concern due to its multi-drug resistance and the recent appearance of hyper-virulent strains in the clinical setting. Colonisation of this environment is associated with a multitude of bacterial factors, and the molecular features that promote environmental persistence in abiotic surfaces, including intrinsic desiccation resistance, biofilm formation and motility, have been previously addressed...
February 2022: Critical Reviews in Microbiology
https://read.qxmd.com/read/34185879/towards-a-druggable-epitranscriptome-compounds-that-target-rna-modifications-in-cancer
#15
REVIEW
María Berdasco, Manel Esteller
Epitranscriptomics is an exciting emerging area that studies biochemical modifications of RNA. The field has been opened up by the technical efforts of the last decade to characterize and quantify RNA modifications, and this has led to a map of post-transcriptional RNA marks in normal cell fate and development. However, the scientific interest has been fuelled by the discovery of aberrant epitranscriptomes associated with human diseases, mainly cancer. The challenge is now to see whether epitrancriptomics offers mechanisms that can be effectively targeted by low MW compounds and are thus druggable...
June 2022: British Journal of Pharmacology
https://read.qxmd.com/read/33844556/the-effect-of-surface-entropy-on-the-heat-of-non-wetting-liquid-intrusion-into-nanopores
#16
JOURNAL ARTICLE
Alexander R Lowe, William S Y Wong, Nikolay Tsyrin, Mirosław A Chorążewski, Abdelali Zaki, Monika Geppert-Rybczyńska, Victor Stoudenets, Antonio Tricoli, Abdessamad Faik, Yaroslav Grosu
On-demand access to renewable and environmentally friendly energy sources is critical to address current and future energy needs. To achieve this, the development of new mechanisms of efficient thermal energy storage (TES) is important to improve the overall energy storage capacity. Demonstrated here is the ideal concept that the thermal effect of developing a solid-liquid interface between a non-wetting liquid and hydrophobic nanoporous material can store heat to supplement current TES technologies. The fundamental macroscopic property of a liquid's surface entropy and its relationship to its solid surface are one of the keys to predict the magnitude of the thermal effect by the development of the liquid-solid interface in a nanoscale environment-driven through applied pressure...
April 12, 2021: Langmuir: the ACS Journal of Surfaces and Colloids
https://read.qxmd.com/read/33795191/tristetraprolin-a-cytosolic-regulator-of-mrna-turnover-moonlighting-as-transcriptional-corepressor-of-gene-expression
#17
REVIEW
Gabriel Rodríguez-Gómez, Alejandro Paredes-Villa, Mayte Guadalupe Cervantes-Badillo, Jessica Paola Gómez-Sonora, Jesús H Jorge-Pérez, Rafael Cervantes-Roldán, Alfonso León-Del-Río
Tristetraprolin (TTP) is a nucleocytoplasmic 326 amino acid protein whose sequence is characterized by possessing two CCCH-type zinc finger domains. In the cytoplasm TTP function is to promote the degradation of mRNAs that contain adenylate/uridylate-rich elements (AREs). Mechanistically, TTP promotes the recruitment of poly(A)-specific deadenylases and exoribonucleases. By reducing the half-life of about 10% of all the transcripts in the cell TTP has been shown to participate in multiple cell processes that include regulation of gene expression, cell proliferation, metabolic homeostasis and control of inflammation and immune responses...
June 2021: Molecular Genetics and Metabolism
https://read.qxmd.com/read/33142861/lncrnas-in-cancer-from-garbage-to-junk
#18
REVIEW
Marianna Aprile, Vicky Katopodi, Eleonora Leucci, Valerio Costa
Sequencing-based transcriptomics has significantly redefined the concept of genome complexity, leading to the identification of thousands of lncRNA genes identification of thousands of lncRNA genes whose products possess transcriptional and/or post-transcriptional regulatory functions that help to shape cell functionality and fate. Indeed, it is well-established now that lncRNAs play a key role in the regulation of gene expression through epigenetic and posttranscriptional mechanims. The rapid increase of studies reporting lncRNAs alteration in cancers has also highlighted their relevance for tumorigenesis...
October 31, 2020: Cancers
https://read.qxmd.com/read/33126043/inhibition-of-the-alternative-lengthening-of-telomeres-pathway-by-subtelomeric-sequences-in-saccharomyces-cerevisiae
#19
JOURNAL ARTICLE
Nathalie Grandin, Maria Eugenia Gallego, Charles I White, Michel Charbonneau
In the budding yeast Saccharomyces cerevisiae, telomerase is constitutively active and is essential for chromosome end protection and illimited proliferation of cell populations. However, upon inactivation of telomerase, alternative mechanims of telomere maintenance allow proliferation of only extremely rare survivors. S. cerevisiae type I and type II survivors differ by the nature of the donor sequences used for repair by homologous recombination of the uncapped terminal TG1-3 telomeric sequences. Type I amplifies the subtelomeric Y' sequences and is more efficient than type II, which amplifies the terminal TG1-3 repeats...
December 2020: DNA Repair
https://read.qxmd.com/read/33123005/onion-bulb-extract-downregulates-egfr-erk1-2-akt-signaling-pathway-and-synergizes-with-steroids-to-inhibit-allergic-inflammation
#20
JOURNAL ARTICLE
Ahmed Z El-Hashim, Maitham A Khajah, Khaled Y Orabi, Sowmya Balakrishnan, Hanan G Sary, Ala A Abdelali
The treatment of allergic diseases, such as asthma, with both conventional and novel therapies presents a challenge both in terms of optimal effect and cost. On the other hand, traditional therapies utilizing natural products such as onion have been in use for centuries with demonstrated efficacy and safety but without much knowledge of their mechanims of action. In this study, we investigated if the anti-inflammatory effects of onion bulb extract (OBE) are mediated via the modulation of the EGFR/ERK1/2/AKT signaling pathway, and whether OBE can synergise with steroids to produce greater anti-inflammatory actions...
2020: Frontiers in Pharmacology
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