keyword
https://read.qxmd.com/read/38581054/feedstock-pretreatment-screening-for-bioconversion-of-sugar-and-lignin-streams-via-deacetylated-disc-refining
#1
JOURNAL ARTICLE
Darren J Peterson, Changyub Paek, Ling Tao, Ryan Davis, Xiaowen Chen, Roman Brunecky, Matthew Fowler, Richard Elander
Recent publications have shown the benefits of deacetylation disc-refining (DDR) as a pretreatment process to deconstruct biomass into sugars and lignin residues. Major advantages of DDR pretreatment over steam and dilute acid pretreatment are the removal of acetyl and lignin during deacetylation. DDR does not generate hydroxymethylfurfural (HMF) and furfural which are commonly produced from steam and dilute acid pretreatments. Acetate, lignin, HMF, and furfural are known inhibitors during enzymatic hydrolysis and fermentation...
April 5, 2024: Biotechnol Biofuels Bioprod
https://read.qxmd.com/read/38570696/soil-pore-characteristics-and-the-fate-of-new-switchgrass-derived-carbon-in-switchgrass-and-prairie-bioenergy-cropping-systems
#2
JOURNAL ARTICLE
Kyungmin Kim, Archana Juyal, Alexandra Kravchenko
Monoculture switchgrass and restored prairie are promising perennial feedstock sources for bioenergy production on the lands unsuitable for conventional agriculture. Such lands often display contrasting topography that influences soil characteristics and interactions between plant growth and soil C gains. This study aimed at elucidating the influences of topography and plant systems on the fate of C originated from switchgrass plants and on its relationships with soil pore characteristics. For that, switchgrass plants were grown in intact soil cores collected from two contrasting topographies, namely steep slopes and topographical depressions, in the fields in multi-year monoculture switchgrass and restored prairie vegetation...
April 3, 2024: Scientific Reports
https://read.qxmd.com/read/38552522/impact-of-freeze-thaw-cycles-on-greenhouse-gas-emissions-in-marginally-productive-agricultural-land-under-different-perennial-bioenergy-crops
#3
JOURNAL ARTICLE
Augustine K Osei, Fereidoun Rezanezhad, Maren Oelbermann
Knowledge of freeze-thaw-induced carbon (C) and nitrogen (N) cycling and concomitant nitrous oxide (N2 O) and carbon dioxide (CO2 ) emissions in perennial bioenergy crops is crucial to understanding the contribution of these crops in mitigating climate change through reduced greenhouse gas (GHG) emissions. In this study, a 49-day laboratory incubation experiment was conducted to compare the impact of freeze-thaw cycles on N2 O and CO2 emissions in different perennial bioenergy crops [miscanthus (Miscanthus giganteus L...
March 28, 2024: Journal of Environmental Management
https://read.qxmd.com/read/38507513/mir156-pvspl2-controls-culm-development-by-transcriptional-repression-of-switchgrass-cytokinin-oxidase-dehydrogenase4
#4
JOURNAL ARTICLE
Ruijuan Yang, Zhenying Wu, Ying Sun, Yuchen Liu, Yuqing Hang, Min Liu, Yajun Liu, Xiaoshan Wang, Wenwen Liu, Chunxiang Fu
Culm development in grasses can be controlled by both miR156 and cytokinin. However, the crosstalk between the miR156-SPL module and the cytokinin metabolic pathway remains largely unknown. Here, we found CYTOKININ OXIDASE/DEHYDROGENASE4 (PvCKX4) plays a negative regulatory role in culm development of the bioenergy grass Panicum virgatum (switchgrass). Overexpression of PvCKX4 in switchgrass reduced the internode diameter and length without affecting tiller number. Interestingly, we also found that PvCKX4 was always upregulated in miR156 overexpressing (miR156OE ) transgenic switchgrass lines...
March 20, 2024: Plant Journal
https://read.qxmd.com/read/38475518/plant-growth-promotion-and-plant-disease-suppression-induced-by-bacillus-amyloliquefaciens-strain-gd4a
#5
JOURNAL ARTICLE
Piao Yang, Pu Yuan, Wenshan Liu, Zhenzhen Zhao, Matthew C Bernier, Chunquan Zhang, Ashna Adhikari, Stephen Obol Opiyo, Lijing Zhao, Fredrekis Banks, Ye Xia
Botrytis cinerea , the causative agent of gray mold disease (GMD), invades plants to obtain nutrients and disseminates through airborne conidia in nature. Bacillus amyloliquefaciens strain GD4a, a beneficial bacterium isolated from switchgrass, shows great potential in managing GMD in plants. However, the precise mechanism by which GD4a confers benefits to plants remains elusive. In this study, an A. thaliana - B. cinerea - B. amyloliquefaciens multiple-scale interaction model was used to explore how beneficial bacteria play essential roles in plant growth promotion, plant pathogen suppression, and plant immunity boosting...
February 28, 2024: Plants (Basel, Switzerland)
https://read.qxmd.com/read/38475413/-pvarl1-increases-biomass-yield-and-enhances-alkaline-tolerance-in-switchgrass-panicum-virgatum-l
#6
JOURNAL ARTICLE
Xue Li, Cong Guan, Huayue Liu, Tingting Wang, Mengzhuo Lin, Die Zhou, Yunwei Zhang, Xiaojing Bi
Switchgrass is an important bioenergy crop valued for its biomass yield and abiotic tolerance. Alkali stress is a major abiotic stress that significantly impedes plant growth and yield due to high salinity and pH; however, the response mechanism of switchgrass to alkali stress remains limited. Here, we characterized PvARL1 , an ARF-like gene, which was up-regulated in both the shoot and root tissues under alkali stress conditions. Overexpression of PvARL1 not only improved alkali tolerance but also promoted biomass yield with more tiller and higher plant height in switchgrass...
February 20, 2024: Plants (Basel, Switzerland)
https://read.qxmd.com/read/38424499/genome-wide-profiling-of-histone-h3-lysine-4-k4-tri-methylation-me3-under-drought-heat-and-combined-stresses-in-switchgrass
#7
JOURNAL ARTICLE
Vasudevan Ayyappan, Venkateswara R Sripathi, Shaojun Xie, Malay C Saha, Rita Hayford, Desalegn D Serba, Mayavan Subramani, Jyothi Thimmapuram, Antonette Todd, Venu Kal Kalavacharla
BACKGROUND: Switchgrass (Panicum virgatum L.) is a warm-season perennial (C4) grass identified as an important biofuel crop in the United States. It is well adapted to the marginal environment where heat and moisture stresses predominantly affect crop growth. However, the underlying molecular mechanisms associated with heat and drought stress tolerance still need to be fully understood in switchgrass. The methylation of H3K4 is often associated with transcriptional activation of genes, including stress-responsive...
February 29, 2024: BMC Genomics
https://read.qxmd.com/read/38401811/biochar-facilitated-biological-co-2-conversion-to-c2-c6-alcohols-and-fatty-acids
#8
JOURNAL ARTICLE
Rahul Thunuguntla, Hasan K Atiyeh, Hailin Zhang, Thaddeus C Ezeji, Ralph S Tanner
Microbial CO2 utilization reduces the carbon footprint, providing economic potential. Biochar, rich in minerals and trace metals, can enhance microbial activity. This study investigates poultry litter and switchgrass biochars produced at 350 and 700 °C (PLB350, PLB700, SGB350 and SGB700, respectively) affect CO2 conversion to C2-C6 alcohols and acids by Clostridium muellerianum P21, C. ragsdalei P11 and C. carboxidivorans P7. Fermentations were in 250-mL bottles containing H2 :CO2 :N2 (60:20:20) shaken at 125 rpm and 37 °C...
February 22, 2024: Bioresource Technology
https://read.qxmd.com/read/38365570/genome-wide-analysis-of-the-switchgrass-yabby-family-and-functional-characterization-of-pvyabby14-in-response-to-aba-and-ga-stress-in-arabidopsis
#9
JOURNAL ARTICLE
Weiwei Wang, Jiayang Ma, Hanxi Liu, Zhulin Wang, Rui Nan, Tao Zhong, Mengyu Sun, Shaoyu Wang, Yaxin Yao, Fengli Sun, Chao Zhang, Yajun Xi
BACKGROUND: The small YABBY plant-specific transcription factor has a prominent role in regulating plant growth progress and responding to abiotic stress. RESULTS: Here, a total of 16 PvYABBYs from switchgrass (Panicum virgatum L.) were identified and classified into four distinct subgroups. Proteins within the same subgroup exhibited similar conserved motifs and gene structures. Synteny analyses indicated that segmental duplication contributed to the expansion of the YABBY gene family in switchgrass and that complex duplication events occurred in rice, maize, soybean, and sorghum...
February 16, 2024: BMC Plant Biology
https://read.qxmd.com/read/38333206/economic-and-sustainability-impacts-of-yield-and-composition-variation-in-bioenergy-crops-switchgrass-panicum-virgatum-l
#10
JOURNAL ARTICLE
Renee M Happs, Rebecca J Hanes, Andrew W Bartling, John L Field, Anne E Harman-Ware, Robin J Clark, Thomas H Pendergast, Katrien M Devos, Erin G Webb, Ali Missaoui, Yaping Xu, Shiva Makaju, Vivek Shrestha, Mitra Mazarei, Charles Neal Stewart, Reginald J Millwood, Brian H Davison
Economically viable production of biobased products and fuels requires high-yielding, high-quality, sustainable process-advantaged crops, developed using bioengineering or advanced breeding approaches. Understanding which crop phenotypic traits have the largest impact on biofuel economics and sustainability outcomes is important for the targeted feedstock crop development. Here, we evaluated biomass yield and cell-wall composition traits across a large natural variant population of switchgrass ( Panicum virgatum L ...
February 5, 2024: ACS Sustainable Chemistry & Engineering
https://read.qxmd.com/read/38320658/n-6-methyladenosine-analysis-unveils-key-mechanisms-underlying-long-term-salt-stress-tolerance-in-switchgrass-panicum-virgatum
#11
JOURNAL ARTICLE
Huayue Liu, Mengzhuo Lin, Hui Wang, Xue Li, Die Zhou, Xiaojing Bi, Yunwei Zhang
N6 -methyladenosine (m6 A) RNA modification is critical for plant growth, development, and environmental stress response. While short-term stress impacts on m6 A are well-documented, the consequences of prolonged stress remain underexplored. This study conducts a thorough transcriptome-wide analysis of m6 A modifications following 28-day exposure to 200mM NaCl. We detected 11,149 differentially expressed genes (DEGs) and 12,936 differentially methylated m6 A peaks, along with a global decrease in m6 A levels...
February 4, 2024: Plant Science: An International Journal of Experimental Plant Biology
https://read.qxmd.com/read/38157547/atomistic-simulations-of-polydisperse-lignin-melts-using-simple-polydisperse-residue-input-generator
#12
JOURNAL ARTICLE
Vaidyanathan Sethuraman, Josh V Vermaas, Luna Liang, Arthur J Ragauskas, Jeremy C Smith, Loukas Petridis
Understanding the physics of lignin will help rationalize its function in plant cell walls as well as aiding practical applications such as deriving biofuels and bioproducts. Here, we present SPRIG (Simple Polydisperse Residue Input Generator), a program for generating atomic-detail models of random polydisperse lignin copolymer melts i.e., the state most commonly found in nature. Using these models, we use all-atom molecular dynamics (MD) simulations to investigate the conformational and dynamic properties of polydisperse melts representative of switchgrass ( Panicum virgatum L...
December 29, 2023: Biomacromolecules
https://read.qxmd.com/read/38132321/plant-growth-promotion-and-stress-tolerance-enhancement-through-inoculation-with-bacillus-proteolyticus-osub18
#13
JOURNAL ARTICLE
Piao Yang, Wenshan Liu, Pu Yuan, Zhenzhen Zhao, Chunquan Zhang, Stephen Obol Opiyo, Ashna Adhikari, Lijing Zhao, Garrett Harsh, Ye Xia
The isolation of B. proteolyticus OSUB18 from switchgrass unveiled its significant potential in both the enhancement of plant growth and the suppression of plant diseases in our previous study. The elucidation of the related mechanisms governing this intricate plant-microbe interaction involved the utilization of the model plant Arabidopsis thaliana . In our comprehensive study on Arabidopsis , OSUB18 treatment was found to significantly alter root architecture and enhance plant growth under various abiotic stresses...
December 6, 2023: Biology
https://read.qxmd.com/read/38131671/metabolic-engineering-of-caldicellulosiruptor-bescii-for-2-3-butanediol-production-from-unpretreated-lignocellulosic-biomass-and-metabolic-strategies-for-improving-yields-and-titers
#14
JOURNAL ARTICLE
Tania N N Tanwee, Gina L Lipscomb, Jason L Vailionis, Ke Zhang, Ryan G Bing, Hailey C O'Quinn, Farris L Poole, Ying Zhang, Robert M Kelly, Michael W W Adams
Lignocellulosic plant biomass as the substrate for microbial synthesis of 2,3-butanediol is one of the major keys toward cost-effective bio-based production of this chemical at an industrial scale. However, deconstruction of biomass to release the sugars for microbial growth currently requires expensive thermochemical and enzymatic pretreatments. In this study, the thermo-cellulolytic bacterium Caldicellulosiruptor bescii was successfully engineered to produce 2,3-butanediol from cellulose, xylan, and directly from unpretreated switchgrass...
December 22, 2023: Applied and Environmental Microbiology
https://read.qxmd.com/read/38079557/impact-of-bioenergy-feedstock-carbon-farming-on-sustainable-aviation-fuel-viability-in-the-united-states
#15
JOURNAL ARTICLE
Sagar Gautam, Nawa Raj Baral, Umakant Mishra, Corinne D Scown
Biomass-derived sustainable aviation fuel holds significant potential for decarbonizing the aviation sector. Its long-term viability depends on crop choice, longevity of soil organic carbon (SOC) sequestration, and the biomass-to-biojet fuel conversion efficiency. We explored the impact of fuel price and SOC value on viable biojet fuel production scale by integrating an agroecosystem model with a field-to-biojet fuel production process model for 1,4-dimethylcyclooctane (DMCO), a representative high-performance biojet fuel molecule, from Miscanthus, sorghum, and switchgrass...
December 19, 2023: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38061966/plants-that-contaminate-feed-and-forage-and-poison-horses-equine-ttxicology
#16
REVIEW
Bryan L Stegelmeier, T Zane Davis
Many toxic plants are unpalatable to horses and are not eaten when alternative forage is available. However, when such plants contaminate prepared or baled feed and forage, herd competition and improved palatability can alter acceptance and thereby cause equine plant poisonings. Dehydropyrrolizidine alkaloid-containing plants; cocklebur; Salvia reflexa; kleingrass, switchgrass, and other saponin-containing grasses; jimson weed, black henbane, and other tropane alkaloid-containing plants; lantana; Cassia spp and other myotoxic plants; castor bean; cyanogenic glycoside-containing plants; thiaminase-containing plants; and hoary alyssum are among those that most commonly poison horses in North America via contaminated feed or forage...
December 6, 2023: Veterinary Clinics of North America. Equine Practice
https://read.qxmd.com/read/38031482/plant-physical-defenses-contribute-to-a-latitudinal-gradient-in-resistance-to-insect-herbivory-within-a-widespread-perennial-grass
#17
JOURNAL ARTICLE
Kevin C Headrick, Thomas E Juenger, Robert W Heckman
PREMISE: Herbivore pressure can vary across a species' range, resulting in different defensive strategies. If herbivory is greater at lower latitudes, plants may be better defended there, potentially driving a latitudinal gradient in defense. However, relationships that manifest across the entire range of a species may be confounded by differences occurring within genetic subpopulations, which may obscure the drivers of these latitudinal gradients. METHODS: We grew plants of the widespread perennial grass Panicum virgatum in a common garden that included genotypes from three genetic subpopulations spanning an 18...
November 29, 2023: American Journal of Botany
https://read.qxmd.com/read/38007196/transcriptomic-analysis-of-ncrnas-and-mrnas-interactions-during-drought-stress-in-switchgrass
#18
JOURNAL ARTICLE
Cong Guan, Wei Li, Guoliang Wang, Ruimei Yang, Jinglei Zhang, Jinhong Zhang, Bo Wu, Run Gao, Chunlin Jia
Switchgrass (Panicum virgatum L.) plays a pivotal role as a bioenergy feedstock in the production of cellulosic ethanol and contributes significantly to enhancing ecological grasslands and soil quality. The utilization of non-coding RNAs (ncRNAs) has gained momentum in deciphering the intricate genetic responses to abiotic stress in various plant species. Nevertheless, the current research landscape lacks a comprehensive exploration of the responses of diverse ncRNAs, including long non-coding RNAs (lncRNAs), circular RNAs (circRNAs), and microRNAs (miRNAs), to drought stress in switchgrass...
November 24, 2023: Plant Science: An International Journal of Experimental Plant Biology
https://read.qxmd.com/read/38005693/antagonistic-activity-of-streptomyces-alfalfae-11f-against-fusarium-wilt-of-watermelon-and-transcriptome-analysis-provides-insights-into-the-synthesis-of-phenazine-1-carboxamide
#19
JOURNAL ARTICLE
Dan Dong, Maoying Li, Taotao Zhang, Zhenfeng Niu, Guoping Xue, Hongmei Bai, Wenyu Zhao, Jiajia Yu, Wei Jiang, Huiling Wu
Streptomyces alfalfa strain 11F has inhibitory effects on many phytopathogenic fungi and improves the establishment and biomass yield of switchgrass. However, the antagonistic effects of strain 11F on Fusarium wilt of watermelon and its secondary metabolites that contribute to its biocontrol activity are poorly understood. We evaluated the antagonistic and growth-promoting effects of strain 11F and conducted a transcriptome analysis to identify the metabolites contributing to antifungal activity. Strain 11F had marked inhibitory effects on six fungal pathogens...
November 8, 2023: Plants (Basel, Switzerland)
https://read.qxmd.com/read/37993069/limiting-acetoin-generation-during-2-3-butanediol-fermentation-with-paenibacillus-polymyxa-using-lignocellulosic-hydrolysates
#20
JOURNAL ARTICLE
Ryan J Stoklosa, Valerie García-Negrón, Renee J Latona, Matthew Toht
Recent decarbonization efforts have led to interests in producing more bio-based chemicals. One attractive chemical produced biochemically is the platform chemical known as 2,3-butanediol (2,3-BDO). In this work a mild alkaline pretreatment using sodium carbonate was performed on corn stover (CS) and switchgrass (SG) to generate hydrolysates for fermentation with the 2,3-BDO producer bacteria Paenibacillius polymyxa. Enzymatic hydrolysis performed on the pretreated CS and SG produced theoretical sugar yields of 80 % and 95 % for glucan and xylan, respectively...
November 20, 2023: Bioresource Technology
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