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https://www.readbyqxmd.com/read/28910696/tissue-microstructure-estimation-using-a-deep-network-inspired-by-a-dictionary-based-framework
#1
Chuyang Ye
Diffusion magnetic resonance imaging (dMRI) captures the anisotropic pattern of water displacement in the neuronal tissue and allows noninvasive investigation of the complex tissue microstructure. A number of biophysical models have been proposed to relate the tissue organization with the observed diffusion signals, so that the tissue microstructure can be inferred. The Neurite Orientation Dispersion and Density Imaging (NODDI) model has been a popular choice and has been widely used for many neuroscientific studies...
September 6, 2017: Medical Image Analysis
https://www.readbyqxmd.com/read/28904988/neurite-dispersion-a-new-marker-of-multiple-sclerosis-spinal-cord-pathology
#2
Francesco Grussu, Torben Schneider, Carmen Tur, Richard L Yates, Mohamed Tachrount, Andrada Ianuş, Marios C Yiannakas, Jia Newcombe, Hui Zhang, Daniel C Alexander, Gabriele C DeLuca, Claudia A M Gandini Wheeler-Kingshott
OBJECTIVE: Conventional magnetic resonance imaging (MRI) of the multiple sclerosis spinal cord is limited by low specificity regarding the underlying pathological processes, and new MRI metrics assessing microscopic damage are required. We aim to show for the first time that neurite orientation dispersion (i.e., variability in axon/dendrite orientations) is a new biomarker that uncovers previously undetected layers of complexity of multiple sclerosis spinal cord pathology. Also, we validate against histology a clinically viable MRI technique for dispersion measurement (neurite orientation dispersion and density imaging, NODDI), to demonstrate the strong potential of the new marker...
September 2017: Annals of Clinical and Translational Neurology
https://www.readbyqxmd.com/read/28817577/detailing-neuroanatomical-development-in-late-childhood-and-early-adolescence-using-noddi
#3
Alyssa Mah, Bryce Geeraert, Catherine Lebel
Diffusion tensor imaging (DTI) studies have provided much evidence of white and subcortical gray matter changes during late childhood and early adolescence that suggest increasing myelination, axon density, and/or fiber coherence. Neurite orientation dispersion and density imaging (NODDI) can be used to further characterize development in white and subcortical grey matter regions in the brain by improving specificity of the MRI signal compared to conventional DTI. We used measures from NODDI and DTI to examine white and subcortical gray matter development in a group of 27 healthy participants aged 8-13 years...
2017: PloS One
https://www.readbyqxmd.com/read/28748504/whole-brain-analyses-of-age-related-microstructural-changes-quantified-using-different-diffusional-magnetic-resonance-imaging-methods
#4
Miho Ota, Noriko Sato, Norihide Maikusa, Daichi Sone, Hiroshi Matsuda, Hiroshi Kunugi
PURPOSE: The new diffusional magnetic resonance imaging (dMRI) techniques, diffusional kurtosis imaging (DKI) and neurite orientation dispersion and density imaging (NODDI) have been developed to clarify the microstructural changes. To our knowledge, however, there is little information on the similarities and differences of these metrics evaluated by the image-by-image paired t test. MATERIALS AND METHODS: Twenty-three healthy subjects underwent dMRI. We estimated the relationships of these metrics evaluated by the image-by-image paired t-test and compared aging effects on each metric...
July 26, 2017: Japanese Journal of Radiology
https://www.readbyqxmd.com/read/28712716/differentiation-of-glioma-malignancy-grade-using-diffusion-mri
#5
Ivan I Maximov, Aram S Tonoyan, Igor N Pronin
Modern diffusion MR protocols allow one to acquire the multi-shell diffusion data with high diffusion weightings in a clinically feasible time. In the present work we assessed three diffusion approaches based on diffusion and kurtosis tensor imaging (DTI, DKI), and neurite orientation dispersion and density imaging (NODDI) as possible biomarkers for human brain glioma grade differentiation based on the one diffusion protocol. We used three diffusion weightings (so called b-values) equal to 0, 1000, and 2500s/mm(2) with 60 non-coplanar diffusion directions in the case of non-zero b-values...
July 13, 2017: Physica Medica: PM
https://www.readbyqxmd.com/read/28711563/application-of-neurite-orientation-dispersion-and-density-imaging-or-diffusion-tensor-imaging-to-quantify-the-severity-of-cervical-spondylotic-myelopathy-and-to-assess-postoperative-neurologic-recovery
#6
Genki Okita, Tetsuro Ohba, Tomohiro Takamura, Shigeto Ebata, Ryo Ueda, Hiroshi Onishi, Hirotaka Haro, Masaaki Hori
BACKGROUND CONTEXT: Surgical outcome and the severity of cervical spondylotic myelopathy (CSM) are unpredictable and cannot be estimated by conventional anatomical magnetic resonance imaging (MRI). The utility of diffusion tensor imaging (DTI) to quantify the severity of CSM and to assess postoperative neurologic recovery has been investigated. However, whether conventional DTI should be applied in a clinical setting remains controversial. Neurite orientation dispersion and density imaging (NODDI) is a recently introduced model-based diffusion-weighted MRI technique that quantifies specific microstructural features related directly to neuronal morphology...
July 12, 2017: Spine Journal: Official Journal of the North American Spine Society
https://www.readbyqxmd.com/read/28676143/sensitivity-of-multi-shell-noddi-to-multiple-sclerosis-white-matter-changes-a-pilot-study
#7
Torben Schneider, W Brownlee, H Zhang, Olga Ciccarelli, David H Miller, Claudia Gandini Wheeler-Kingshott
Diffusion tensor imaging (DTI) is sensitive to white matter (WM) damage in multiple sclerosis (MS), not only in focal lesions but also in the normal-appearing WM (NAWM). However, DTI indices can also be affected by natural spatial variation in WM, as seen in crossing and dispersing white matter fibers. Neurite orientation dispersion and density imaging (NODDI) is an advanced diffusion-weighted imaging technique that provides distinct indices of fiber density and dispersion. We performed NODDI of lesion tissue and NAWM in five MS patients and five controls, comparing the technique with traditional DTI...
April 2017: Functional Neurology
https://www.readbyqxmd.com/read/28578156/apoe-influences-regional-white-matter-axonal-density-loss-in-alzheimer-s-disease
#8
Catherine F Slattery, Jiaying Zhang, Ross W Paterson, Alexander J M Foulkes, Amelia Carton, Kirsty Macpherson, Laura Mancini, David L Thomas, Marc Modat, Nicolas Toussaint, David M Cash, John S Thornton, Susie M D Henley, Sebastian J Crutch, Daniel C Alexander, Sebastien Ourselin, Nick C Fox, Hui Zhang, Jonathan M Schott
Mechanisms underlying phenotypic heterogeneity in young onset Alzheimer disease (YOAD) are poorly understood. We used diffusion tensor imaging and neurite orientation dispersion and density imaging (NODDI) with tract-based spatial statistics to investigate apolipoprotein (APOE) ε4 modulation of white-matter damage in 37 patients with YOAD (22, 59% APOE ε4 positive) and 23 age-matched controls. Correlation between neurite density index (NDI) and neuropsychological performance was assessed in 4 white-matter regions of interest...
September 2017: Neurobiology of Aging
https://www.readbyqxmd.com/read/28560158/application-and-evaluation-of-noddi-in-the-cervical-spinal-cord-of-multiple-sclerosis-patients
#9
Samantha By, Junzhong Xu, Bailey A Box, Francesca R Bagnato, Seth A Smith
INTRODUCTION: There is a need to develop imaging methods sensitive to axonal injury in multiple sclerosis (MS), given the prominent impact of axonal pathology on disability and outcome. Advanced multi-compartmental diffusion models offer novel indices sensitive to white matter microstructure. One such model, neurite orientation dispersion and density imaging (NODDI), is sensitive to neurite morphology, providing indices of apparent volume fractions of axons (vin), isotropic water (viso) and the dispersion of fibers about a central axis (orientation dispersion index, ODI)...
2017: NeuroImage: Clinical
https://www.readbyqxmd.com/read/28556431/white-matter-microstructure-in-athletes-with-a-history-of-concussion-comparing-diffusion-tensor-imaging-dti-and-neurite-orientation-dispersion-and-density-imaging-noddi
#10
Nathan W Churchill, Eduardo Caverzasi, Simon J Graham, Michael G Hutchison, Tom A Schweizer
Sport concussion is associated with disturbances in brain function in the absence of gross anatomical lesions, and may have long-term health consequences. Diffusion-weighted magnetic resonance imaging (MRI) methods provide a powerful tool for investigating alterations in white matter microstructure reflecting the long-term effects of concussion. In a previous study, diffusion tensor imaging (DTI) showed that athletes with a history of concussion had elevated fractional anisotropy (FA) and reduced mean diffusivity (MD) parameters...
May 29, 2017: Human Brain Mapping
https://www.readbyqxmd.com/read/28542258/bycatch-in-the-maldivian-pole-and-line-tuna-fishery
#11
Kelsey I Miller, Ibrahim Nadheeh, A Riyaz Jauharee, R Charles Anderson, M Shiham Adam
Tropical tuna fisheries are among the largest worldwide, with some having significant bycatch issues. However, pole-and-line tuna fisheries are widely believed to have low bycatch rates, although these have rarely been quantified. The Maldives has an important pole-and-line fishery, targeting skipjack tuna (Katsuwonus pelamis). In the Maldives, 106 pole-and-line tuna fishing days were observed between August 2014 and November 2015. During 161 fishing events, tuna catches amounted to 147 t: 72% by weight was skipjack, 25% yellowfin tuna (Thunnus albacares) and 3% other tunas...
2017: PloS One
https://www.readbyqxmd.com/read/28532604/validation-of-dwi-pre-processing-procedures-for-reliable-differentiation-between-human-brain-gliomas
#12
Sebastian Vellmer, Aram S Tonoyan, Dieter Suter, Igor N Pronin, Ivan I Maximov
Diffusion magnetic resonance imaging (dMRI) is a powerful tool in clinical applications, in particular, in oncology screening. dMRI demonstrated its benefit and efficiency in the localisation and detection of different types of human brain tumours. Clinical dMRI data suffer from multiple artefacts such as motion and eddy-current distortions, contamination by noise, outliers etc. In order to increase the image quality of the derived diffusion scalar metrics and the accuracy of the subsequent data analysis, various pre-processing approaches are actively developed and used...
May 19, 2017: Zeitschrift Für Medizinische Physik
https://www.readbyqxmd.com/read/28491462/understanding-microstructure-of-the-brain-by-comparison-of-neurite-orientation-dispersion-and-density-imaging-noddi-with-transparent-mouse-brain
#13
Kanako Sato, Aurelien Kerever, Koji Kamagata, Kohei Tsuruta, Ryusuke Irie, Kazuhiko Tagawa, Hitoshi Okazawa, Eri Arikawa-Hirasawa, Nobuhiro Nitta, Ichio Aoki, Shigeki Aoki
BACKGROUND: Neurite orientation dispersion and density imaging (NODDI) is a diffusion magnetic resonance imaging (MRI) technique with the potential to visualize the microstructure of the brain. Revolutionary histological methods to render the mouse brain transparent have recently been developed, but verification of NODDI by these methods has not been reported. PURPOSE: To confirm the concordance of NODDI with histology in terms of density and orientation dispersion of neurites of the brain...
April 2017: Acta Radiologica Open
https://www.readbyqxmd.com/read/28470878/gray-matter-abnormalities-in-idiopathic-parkinson-s-disease-evaluation-by-diffusional-kurtosis-imaging-and-neurite-orientation-dispersion-and-density-imaging
#14
Koji Kamagata, Andrew Zalesky, Taku Hatano, Ryo Ueda, Maria Angelique Di Biase, Ayami Okuzumi, Keigo Shimoji, Masaaki Hori, Karen Caeyenberghs, Christos Pantelis, Nobutaka Hattori, Shigeki Aoki
Mapping gray matter (GM) pathology in Parkinson's disease (PD) with conventional MRI is challenging, and the need for more sensitive brain imaging techniques is essential to facilitate early diagnosis and assessment of disease severity. GM microstructure was assessed with GM-based spatial statistics applied to diffusion kurtosis imaging (DKI) and neurite orientation dispersion imaging (NODDI) in 30 participants with PD and 28 age- and gender-matched controls. These were compared with currently used assessment methods such as diffusion tensor imaging (DTI), voxel-based morphometry (VBM), and surface-based cortical thickness analysis...
May 4, 2017: Human Brain Mapping
https://www.readbyqxmd.com/read/28457975/robust-and-fast-nonlinear-optimization-of-diffusion-mri-microstructure-models
#15
R L Harms, F J Fritz, A Tobisch, R Goebel, A Roebroeck
Advances in biophysical multi-compartment modeling for diffusion MRI (dMRI) have gained popularity because of greater specificity than DTI in relating the dMRI signal to underlying cellular microstructure. A large range of these diffusion microstructure models have been developed and each of the popular models comes with its own, often different, optimization algorithm, noise model and initialization strategy to estimate its parameter maps. Since data fit, accuracy and precision is hard to verify, this creates additional challenges to comparability and generalization of results from diffusion microstructure models...
July 15, 2017: NeuroImage
https://www.readbyqxmd.com/read/28348958/diffusion-imaging-of-reversible-and-irreversible-microstructural-changes-within-the-corticospinal-tract-in-idiopathic-normal-pressure-hydrocephalus
#16
Kouhei Kamiya, Masaaki Hori, Ryusuke Irie, Masakazu Miyajima, Madoka Nakajima, Koji Kamagata, Kouhei Tsuruta, Asami Saito, Misaki Nakazawa, Yuichi Suzuki, Harushi Mori, Akira Kunimatsu, Hajime Arai, Shigeki Aoki, Osamu Abe
The symptoms of idiopathic normal pressure hydrocephalus (iNPH) can be improved by shunt surgery, but prediction of treatment outcome is not established. We investigated changes of the corticospinal tract (CST) in iNPH before and after shunt surgery by using diffusion microstructural imaging, which infers more specific tissue properties than conventional diffusion tensor imaging. Two biophysical models were used: neurite orientation dispersion and density imaging (NODDI) and white matter tract integrity (WMTI)...
2017: NeuroImage: Clinical
https://www.readbyqxmd.com/read/28166941/keeping-it-regular-development-of-thermoregulation-in-four-tropical-seabird-species
#17
Lorinda A Hart, Colleen T Downs, Mark Brown
The thermoregulatory capacity of a species can determine which climatic niche it occupies. Its development in avian chicks is influenced by numerous factors. Furthermore, it is suggested that altricial chicks develop their thermoregulatory capacity post-hatching, while precocial chicks develop aspects of this in the egg. We investigated the development of thermoregulation of four co-occurring seabird species in the Seychelles; namely white, ground-nesting white-tailed tropicbirds (Phaethon lepturus) and tree-nesting fairy terns (Gygis alba); and dark plumaged, tree-nesting lesser noddies (Anous tenuirostris) and ground- and tree-nesting brown noddies (A...
February 2017: Journal of Thermal Biology
https://www.readbyqxmd.com/read/28090658/analysis-of-the-effects-of-noise-dwi-sampling-and-value-of-assumed-parameters-in-diffusion-mri-models
#18
Elizabeth B Hutchinson, Alexandru V Avram, M Okan Irfanoglu, C Guan Koay, Alan S Barnett, Michal E Komlosh, Evren Özarslan, Susan C Schwerin, Sharon L Juliano, Carlo Pierpaoli
PURPOSE: This study was a systematic evaluation across different and prominent diffusion MRI models to better understand the ways in which scalar metrics are influenced by experimental factors, including experimental design (diffusion-weighted imaging [DWI] sampling) and noise. METHODS: Four diffusion MRI models-diffusion tensor imaging (DTI), diffusion kurtosis imaging (DKI), mean apparent propagator MRI (MAP-MRI), and neurite orientation dispersion and density imaging (NODDI)-were evaluated by comparing maps and histogram values of the scalar metrics generated using DWI datasets obtained in fixed mouse brain with different noise levels and DWI sampling complexity...
January 16, 2017: Magnetic Resonance in Medicine: Official Journal of the Society of Magnetic Resonance in Medicine
https://www.readbyqxmd.com/read/28087489/neurite-density-index-is-sensitive-to-age-related-differences-in-the-developing-brain
#19
Sila Genc, Charles B Malpas, Scott K Holland, Richard Beare, Timothy J Silk
PURPOSE: White matter development during childhood and adolescence is characterised by increasing white matter coherence and organisation. Commonly used scalar metrics, such as fractional anisotropy (FA), are sensitive to multiple mechanisms of white matter change and therefore unable to distinguish between mechanisms that change during development. We investigate the relationship between age and neurite density index (NDI) from neurite orientation dispersion and density imaging (NODDI), and the age-classification accuracy of NDI compared with FA, in a developmental cohort...
January 11, 2017: NeuroImage
https://www.readbyqxmd.com/read/28002426/assessing-microstructural-substrates-of-white-matter-abnormalities-a-comparative-study-using-dti-and-noddi
#20
COMPARATIVE STUDY
Inge Timmers, Alard Roebroeck, Matteo Bastiani, Bernadette Jansma, Estela Rubio-Gozalbo, Hui Zhang
Neurite orientation dispersion and density imaging (NODDI) enables more specific characterization of tissue microstructure by estimating neurite density (NDI) and orientation dispersion (ODI), two key contributors to fractional anisotropy (FA). The present work compared NODDI- with diffusion tensor imaging (DTI)-derived indices for investigating white matter abnormalities in a clinical sample. We assessed the added value of NODDI parameters over FA, by contrasting group differences identified by both models...
2016: PloS One
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