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https://www.readbyqxmd.com/read/29223566/progress-in-proton-detected-solid-state-nmr-ssnmr-super-fast-2d-ssnmr-collection-for-nano-mole-scale-proteins
#1
Yoshitaka Ishii, Ayesha Wickramasinghe, Isamu Matsuda, Yuki Endo, Yuji Ishii, Yusuke Nishiyama, Takahiro Nemoto, Takayuki Kamihara
Proton-detected solid-state NMR (SSNMR) spectroscopy has attracted much attention due to its excellent sensitivity and effectiveness in the analysis of trace amounts of amyloid proteins and other important biological systems. In this perspective article, we present the recent sensitivity limit of 1H-detected SSNMR using "ultra-fast" magic-angle spinning (MAS) at a spinning rate (νR) of 80-100 kHz. It was demonstrated that the high sensitivity of 1H-detected SSNMR at νR of 100 kHz and fast recycling using the paramagnetic-assisted condensed data collection (PACC) approach permitted "super-fast" collection of 1H-detected 2D protein SSNMR...
November 28, 2017: Journal of Magnetic Resonance
https://www.readbyqxmd.com/read/29197977/direct-assignment-of-13c-solid-state-nmr-signals-of-tfof1-atp-synthase-subunit-c-ring-in-lipid-membranes-and-its-implication-for-the-ring-structure
#2
Su-Jin Kang, Yasuto Todokoro, Suyeon Bak, Toshiharu Suzuki, Masasuke Yoshida, Toshimichi Fujiwara, Hideo Akutsu
FoF1-ATP synthase catalyzes ATP hydrolysis/synthesis coupled with a transmembrane H+ translocation in membranes. The Fo c-subunit ring plays a major role in this reaction. We have developed an assignment strategy for solid-state 13C NMR (ssNMR) signals of the Fo c-subunit ring of thermophilic Bacillus PS3 (TFo c-ring, 72 residues), carrying one of the basic folds of membrane proteins. In a ssNMR spectrum of uniformly 13C-labeled sample, the signal overlap has been a major bottleneck because most amino acid residues are hydrophobic...
December 2, 2017: Journal of Biomolecular NMR
https://www.readbyqxmd.com/read/29192920/in-situ-characterization-of-advanced-glycation-end-products-ages-in-collagen-and-model-extracellular-matrix-by-solid-state-nmr
#3
R Li, R Rajan, W C V Wong, D G Reid, M J Duer, V J Somovilla, N Martinez-Saez, G J L Bernardes, R Hayward, C M Shanahan
Non-enzymatic glycation of extracellular matrix with (U-13C5)-d-ribose-5-phosphate (R5P), enables in situ 2D ssNMR identification of many deleterious protein modifications and crosslinks, including previously unreported oxalamido and hemiaminal (CH3-CH(OH)NHR) substructures. Changes in charged residue proportions and distribution may be as important as crosslinking in provoking and understanding harmful tissue changes.
December 1, 2017: Chemical Communications: Chem Comm
https://www.readbyqxmd.com/read/29173803/1h-detected-mas-solid-state-nmr-experiments-enable-the-simultaneous-mapping-of-rigid-and-dynamic-domains-of-membrane-proteins
#4
T Gopinath, Sarah E D Nelson, Gianluigi Veglia
Magic angle spinning (MAS) solid-state NMR (ssNMR) spectroscopy is emerging as a unique method for the atomic resolution structure determination of native membrane proteins in lipid bilayers. Although 13C-detected ssNMR experiments continue to play a major role, recent technological developments have made it possible to carry out 1H-detected experiments, boosting both sensitivity and resolution. Here, we describe a new set of 1H-detected hybrid pulse sequences that combine through-bond and through-space correlation elements into single experiments, enabling the simultaneous detection of rigid and dynamic domains of membrane proteins...
December 2017: Journal of Magnetic Resonance
https://www.readbyqxmd.com/read/29151208/strategies-for-efficient-sample-preparation-for-dynamic-nuclear-polarization-solid-state-nmr-of-biological-macromolecules
#5
Boris Itin, Ivan V Sergeyev
Solid-state NMR (SSNMR) is a powerful tool for the elucidation of structure and dynamics in biological macromolecules. Over the years, SSNMR spectroscopists have developed an array of techniques enabling the measurement of internuclear correlations, distances, and torsional angles; these have been applied to the study of a number of biological systems that are difficult to study by X-ray crystallography and solution NMR, including key biological targets such as membrane proteins and amyloid fibrils. Applications of SSNMR to other topic areas, including materials science, pharmaceuticals, and small molecules, have also flourished in recent years...
2018: Methods in Molecular Biology
https://www.readbyqxmd.com/read/29151207/rapid-prediction-of-multi-dimensional-nmr-data-sets-using-fandas
#6
Siddarth Narasimhan, Deni Mance, Cecilia Pinto, Markus Weingarth, Alexandre M J J Bonvin, Marc Baldus
Solid-state NMR (ssNMR) can provide structural information at the most detailed level and, at the same time, is applicable in highly heterogeneous and complex molecular environments. In the last few years, ssNMR has made significant progress in uncovering structure and dynamics of proteins in their native cellular environments [1-4]. Additionally, ssNMR has proven to be useful in studying large biomolecular complexes as well as membrane proteins at the atomic level [5]. In such studies, innovative labeling schemes have become a powerful approach to tackle spectral crowding...
2018: Methods in Molecular Biology
https://www.readbyqxmd.com/read/29151205/filamentous-bacteriophage-viruses-preparation-magic-angle-spinning-solid-state-nmr-experiments-and-structure-determination
#7
Omry Morag, Nikolaos G Sgourakis, Gili Abramov, Amir Goldbourt
Filamentous bacteriophages are elongated semi-flexible viruses that infect bacteria. They consist of a circular single-stranded DNA (ssDNA) wrapped by a capsid consisting of thousands of copies of a major coat protein subunit. Given the increasing number of discovered phages and the existence of only a handful of structures, the development of methods for phage structure determination is valuable for biophysics and structural virology. In recent years, we developed and applied techniques to elucidate the 3D atomic-resolution structures of intact bacteriophages using experimental magic-angle spinning (MAS) solid-state NMR data...
2018: Methods in Molecular Biology
https://www.readbyqxmd.com/read/29121569/comparison-of-the-analytical-methods-solid-state-nmr-ft-ir-pxrd-in-the-analysis-of-the-solid-drug-forms-with-low-concentration-of-an-active-ingredient-17-%C3%AE-estradiol-case
#8
Łukasz Szeleszczuk, Ewa Jurczak, Monika Zielińska-Pisklak, Jakub Harwacki, Dariusz Maciej Pisklak
The application of various techniques (FT-IR, PXRD, ssNMR) in the analysis of solid dosage forms with low concentration of an API (17-β-estradiol hemihydrate, EBHH) was tested. PXRD analysis of Estrofem Mite tablets (EMT) confirmed the presence of the main crystalline excipient, α-lactose monohydrate. In the PXRD pattern of EMT the strong background from polycrystalline excipients, i.e. hydroxypropylmethylcellulose and corn starch was observed. FT-IR spectra were characterized by the broad peaks in the 3000-3600cm(-1) region of the OH stretching modes coming from multiple hydrogen bonds that are present in the structures of the excipients (α-lactose monohydrate, corn starch) and API...
November 6, 2017: Journal of Pharmaceutical and Biomedical Analysis
https://www.readbyqxmd.com/read/29059553/design-and-construction-of-a-quadruple-resonance-mas-nmr-probe-for-investigation-of-extensively-deuterated-biomolecules
#9
Kelsey A Collier, Suvrajit Sengupta, Catalina A Espinosa, John E Kelly, Jessica I Kelz, Rachel W Martin
Extensive deuteration is frequently used in solid-state NMR studies of biomolecules because it dramatically reduces both homonuclear ((1)H-(1)H) and heteronuclear ((1)H-(13)C and (1)H-(15)N) dipolar interactions. This approach greatly improves resolution, enables low-power rf decoupling, and facilitates (1)H-detected experiments even in rigid solids at moderate MAS rates. However, the resolution enhancement is obtained at some cost due the reduced abundance of protons available for polarization transfer. Although deuterium is a useful spin-1 NMR nucleus, in typical experiments the deuterons are not directly utilized because the available probes are usually triple-tuned to (1)H,(13)C and (15)N...
October 12, 2017: Journal of Magnetic Resonance
https://www.readbyqxmd.com/read/29048717/unexpected-crystallization-patterns-of-zinc-boron-imidazolate-framework-zbif-1-nmr-crystallography-of-integrated-metal-organic-frameworks
#10
Libor Kobera, Jan Rohlicek, Jiri Czernek, Sabina Abbrent, Magda Streckova, Tibor Sopcak, Jiri Brus
Framework materials, both metal-organic frameworks (MOFs) and inorganic frameworks (zeolites), are porous systems with regular structures that provide valuable properties suitable for sorption, catalysis, molecular sieving, etc. Herein, we present an efficient, experimental/computational strategy allowing for the detailed characterization of a polycrystalline MOF system, ZBIF-1, with two integrated unit cells on the atomic-resolution level. Although high-resolution 1H, 11B, 13C and 15N MAS NMR spectra provided valuable structural information on the co-existence of two distinct asymmetric units in the investigated system, the utilized NMR crystallography approach combining XRPD, ssNMR and DFT calculations allowed us to firmly define the exact structure of the secondary crystalline phase and, furthermore, to resolve the mutual interconnectivity of the two crystalline frameworks...
October 19, 2017: Chemphyschem: a European Journal of Chemical Physics and Physical Chemistry
https://www.readbyqxmd.com/read/29035839/insights-into-protein-misfolding-and-aggregation-enabled-by-solid-state-nmr-spectroscopy
#11
REVIEW
Patrick C A van der Wel
The aggregation of proteins and peptides into a variety of insoluble, and often non-native, aggregated states plays a central role in many devastating diseases. Analogous processes undermine the efficacy of polypeptide-based biological pharmaceuticals, but are also being leveraged in the design of biologically inspired self-assembling materials. This Trends article surveys the essential contributions made by recent solid-state NMR (ssNMR) studies to our understanding of the structural features of polypeptide aggregates, and how such findings are informing our thinking about the molecular mechanisms of misfolding and aggregation...
October 4, 2017: Solid State Nuclear Magnetic Resonance
https://www.readbyqxmd.com/read/28994783/atomic-scale-structural-studies-of-macromolecular-assemblies-by-solid-state-nuclear-magnetic-resonance-spectroscopy
#12
Antoine Loquet, James Tolchard, Melanie Berbon, Denis Martinez, Birgit Habenstein
Supramolecular protein assemblies play fundamental roles in biological processes ranging from host-pathogen interaction, viral infection to the propagation of neurodegenerative disorders. Such assemblies consist in multiple protein subunits organized in a non-covalent way to form large macromolecular objects that can execute a variety of cellular functions or cause detrimental consequences. Atomic insights into the assembly mechanisms and the functioning of those macromolecular assemblies remain often scarce since their inherent insolubility and non-crystallinity often drastically reduces the quality of the data obtained from most techniques used in structural biology, such as X-ray crystallography and solution Nuclear Magnetic Resonance (NMR)...
September 17, 2017: Journal of Visualized Experiments: JoVE
https://www.readbyqxmd.com/read/28994190/analysis-of-molecular-orientation-in-organic-semiconducting-thin-films-using-static-dynamic-nuclear-polarization-enhanced-solid-state-nmr-spectroscopy
#13
Katsuaki Suzuki, Shosei Kubo, Fabien Aussenac, Frank Engelke, Tatsuya Fukushima, Hironori Kaji
Molecular orientation in amorphous organic semiconducting thin-film devices is an important issue affecting device performance. However, to date it has not been possible to analyze the "distribution" of the orientations. Although solid-state NMR (ssNMR) spectroscopy can provide information on the "distribution" of molecular orientations, the technique is limited because of the small amount of sample in the device and the low sensitivity of ssNMR. Here, we report the first application of dynamic nuclear polarization enhanced ssNMR (DNP-ssNMR) spectroscopy for the orientational analysis of amorphous phenyldi(pyren-1-yl)phosphine oxide (POPy2 )...
October 9, 2017: Angewandte Chemie
https://www.readbyqxmd.com/read/28993612/an-even-pattern-of-xylan-substitution-is-critical-for-interaction-with-cellulose-in-plant-cell-walls
#14
Nicholas J Grantham, Joel Wurman-Rodrich, Oliver M Terrett, Jan J Lyczakowski, Katherine Stott, Dinu Iuga, Thomas J Simmons, Mylene Durand-Tardif, Steven P Brown, Ray Dupree, Marta Busse-Wicher, Paul Dupree
Xylan and cellulose are abundant polysaccharides in vascular plants and essential for secondary cell wall strength. Acetate or glucuronic acid decorations are exclusively found on even-numbered residues in most of the glucuronoxylan polymer. It has been proposed that this even-specific positioning of the decorations might permit docking of xylan onto the hydrophilic face of a cellulose microfibril (1-3) . Consequently, xylan adopts a flattened ribbon-like twofold screw conformation when bound to cellulose in the cell wall (4) ...
October 9, 2017: Nature Plants
https://www.readbyqxmd.com/read/28991202/solid-state-form-characterization-of-riparin-i
#15
Elisana Afonso de Moura, Márcio Vinícius Cahino Terto, Elisângela Afonso de Moura Mendonça, José Valdilânio Virgulino Procópio, Vicente Carlos de O Costa, José Maria Barbosa Filho, Stanley Juan Chavez Gutierrez, Josean Fechine Tavares, Rui Oliveira Macedo, Marcelo Sobral da Silva
Riparin I is an alkamide with potential anxiolytic activity in preclinical studies. The characterization and understanding of solid-state properties play an importance role in drug development. For this work, the solid state of five riparin I batches (RIP-1, RIP-2, RIP-3, RIP-4, and RIP-5), obtained by the same synthesis process, were characterized by Scanning Electron Microscopy (SEM), Differential Scanning Calorimetry (DSC), DSC-photovisual, Thermogravimetry (TG), Fourier Transform Infrared (FTIR), Pyrolysis (Pyr-GC/MS), X-ray Powder Diffraction (PXRD), and Solid-State Nuclear Magnetic Resonance (ssNMR) techniques...
October 9, 2017: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://www.readbyqxmd.com/read/28971441/investigation-of-dissolution-behavior-hpmc-eudragit-%C3%A2-magnesium-aluminometasilicate-oral-matrices-based-on-nmr-solid-state-spectroscopy-and-dynamic-characteristics-of-gel-layer
#16
M Naiserová, K Kubová, J Vysloužil, S Pavloková, D Vetchý, M Urbanová, J Brus, J Vysloužil, P Kulich
Burst drug release is often considered a negative phenomenon resulting in unexpected toxicity or tissue irritation. Optimal release of a highly soluble active pharmaceutical ingredient (API) from hypromellose (HPMC) matrices is technologically impossible; therefore, a combination of polymers is required for burst effect reduction. Promising variant could be seen in combination of HPMC and insoluble Eudragits(®) as water dispersions. These can be applied only on API/insoluble filler mixture as over-wetting prevention...
October 2, 2017: AAPS PharmSciTech
https://www.readbyqxmd.com/read/28956461/multicomponent-crystals-of-gliclazide-and-tromethamine-preparation-physico-chemical-and-pharmaceutical-characterization
#17
Giovanna Bruni, Vittorio Berbenni, Lauretta Maggi, Piercarlo Mustarelli, Valeria Friuli, Chiara Ferrara, Francesca Pardi, Federica Castagna, Alessandro Girella, Chiara Milanese, Amedeo Marini
OBJECTIVE: To improve the pharmaceutical behaviour of the oral antidiabetic agent gliclazide through the synthesis of multicomponent crystals with tromethamine. METHODS: Multicomponent crystals were prepared by solvent evaporation method, kneading and combining mechanical and thermal activation. DSC, FT-IR spectroscopy, X-ray diffraction, SEM-EDS and SSNMR were used to investigate their formation. Measurements of solubility and dissolution rate were carried out for the pharmaceutical characterization...
September 28, 2017: Drug Development and Industrial Pharmacy
https://www.readbyqxmd.com/read/28923766/development-of-stability-enhanced-ternary-solid-dispersions-via-combinations-of-hpmcp-and-soluplus-%C3%A2-processed-by-hot-melt-extrusion
#18
Ahmad B Albadarin, Catherine B Potter, Mark T Davis, Javed Iqbal, Sachin Korde, Sudhir Pagire, Anant Paradkar, Gavin Walker
The aim of this study was to evaluate a novel combination of hydroxypropyl methylcellulose phthalate (HPMCP-HP-50) and Soluplus(®) polymers for enhanced physicochemical stability and solubility of the produced amorphous solid dispersions (ASDs). This was achieved using hot melt extrusion (HME) to convert the crystalline active pharmaceutical ingredient (API) into a more soluble amorphous form within the ternary systems. Itraconazole (ITZ), a Biopharmaceutics Classification System class II (BCS II) API, was selected as the model drug...
September 18, 2017: International Journal of Pharmaceutics
https://www.readbyqxmd.com/read/28898103/comparative-study-of-secondary-structure-and-interactions-of-the-r5-peptide-in-silicon-oxide-and-titanium-oxide-coprecipitates-using-solid-state-nmr-spectroscopy
#19
Erika L Buckle, Adrienne Roehrich, Branden Vandermoon, Gary P Drobny
A biomimetic, peptide-mediated approach to inorganic nanostructure formation is of great interest as an alternative to industrial production methods. To investigate the role of peptide structure on silica (SiO2) and titania (TiO2) morphologies, we use the R5 peptide domain derived from the silaffin protein to produce uniform SiO2 and TiO2 nanostructures from the precursor silicic acid and titanium bis(ammonium lactato)dihydroxide, respectively. The resulting biosilica and biotitania nanostructures are characterized using scanning electron microscopy...
September 25, 2017: Langmuir: the ACS Journal of Surfaces and Colloids
https://www.readbyqxmd.com/read/28893910/protonation-equilibria-and-pore-opening-structure-of-the-dual-histidine-influenza-b-virus-m2-transmembrane-proton-channel-from-solid-state-nmr
#20
Jonathan K Williams, Alexander A Shcherbakov, Jun Wang, Mei Hong
The influenza A and B viruses are the primary cause of seasonal flu epidemics. Common to both viruses is the M2 protein, a homotetrameric transmembrane proton channel that acidifies the virion after endocytosis. Although influenza A M2 (AM2) and B M2 (BM2) are functional analogs, they have little sequence homology, except for a conserved HXXXW motif, which is responsible for proton selectivity and channel gating. Importantly, BM2 contains a second titratable histidine, His-27, in the tetrameric transmembrane domain that forms a reverse WXXXH motif with the gating tryptophan...
October 27, 2017: Journal of Biological Chemistry
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