keyword
https://read.qxmd.com/read/38511055/integrative-bioinformatics-analysis-of-mirna-and-mrna-expression-profiles-and-identification-of-associated-mirna-mrna-network-in-intracranial-aneurysms
#1
JOURNAL ARTICLE
Dongxiao Xu, Ilgiz Gareev, Ozal Beylerli, Valentin Pavlov, Huang Le, Huaizhang Shi
BACKGROUND: Intracranial aneurysms (IAs) represent protrusions in the vascular wall, with their growth and wall thinning influenced by various factors. These processes can culminate in the rupture of the aneurysm, leading to subarachnoid hemorrhage (SAH). Unfortunately, over half of the patients prove unable to withstand SAH, succumbing to adverse outcomes despite intensive therapeutic interventions, even in premier medical facilities. This study seeks to discern the pivotal microRNAs (miRNAs) and genes associated with the formation and progression of IAs...
June 2024: Non-Coding RNA Research
https://read.qxmd.com/read/38130905/comprehensive-analysis-of-mettls-mettl1-13-18-21a-23-25-2a-2b-5-6-9-and-associated-mrna-risk-signature-in-hepatocellular-carcinoma
#2
JOURNAL ARTICLE
Haoyu Wang, Shangshang Hu, Junjie Nie, Xiaodan Qin, Xu Zhang, Qian Wang, John Zhong Li
Currently, 80%-90% of liver cancers are hepatocellular carcinomas (HCC). HCC patients develop insidiously and have an inferior prognosis. The methyltransferase-like (METTL) family principal members are strongly associated with epigenetic and tumor progression. The present study mainly analyzed the value of METTLs (METTL1/13/18/21A/23/25/2A/2B/5/6/9) and associated mRNA risk signature for HCC. METTLs expression is upregulated in HCC and is a poor prognostic factor in HCC. METTLs were upregulated in patients older than 60 and associated with grade...
2023: Analytical Cellular Pathology (Amsterdam)
https://read.qxmd.com/read/32219808/artificial-intelligence-analysis-of-gene-expression-data-predicted-the-prognosis-of-patients-with-diffuse-large-b-cell-lymphoma
#3
JOURNAL ARTICLE
Joaquim Carreras, Rifat Hamoudi, Naoya Nakamura
OBJECTIVE: We aimed to identify new biomarkers in Diffuse Large B-cell Lymphoma (DLBCL) using the deep learning technique. METHODS AND RESULTS: The multilayer perceptron (MLP) analysis was performed in the GSE10846 series, divided into discovery (n = 100) and validation (n = 414) sets. The top 25 gene-probes from a total of 54,614 were selected based on their normalized importance for outcome prediction (dead/alive). By Gene Set Enrichment Analysis (GSEA) the association to unfavorable prognosis was confirmed...
April 20, 2020: Tokai Journal of Experimental and Clinical Medicine
https://read.qxmd.com/read/28912266/lysine-trimethylation-regulates-78-kda-glucose-regulated-protein-proteostasis-during-endoplasmic-reticulum-stress
#4
JOURNAL ARTICLE
Jonas Sieber, Nicolas Wieder, Mauricio Ostrosky-Frid, Moran Dvela-Levitt, Ozan Aygün, Namrata D Udeshi, Steven A Carr, Anna Greka
The up-regulation of chaperones such as the 78-kDa glucose-regulated protein (GRP78, also referred to as BiP or HSPA5) is part of the adaptive cellular response to endoplasmic reticulum (ER) stress. GRP78 is widely used as a marker of the unfolded protein response, associated with sustained ER stress. Here we report the discovery of a proteostatic mechanism involving GRP78 trimethylation in the context of ER stress. Using mass spectrometry-based proteomics, we identified two GRP78 fractions, one homeostatic and one induced by ER stress...
November 17, 2017: Journal of Biological Chemistry
https://read.qxmd.com/read/26115316/saccharomyces-cerevisiae-eukaryotic-elongation-factor-1a-eef1a-is-methylated-at-lys-390-by-a-mettl21-like-methyltransferase
#5
JOURNAL ARTICLE
Magnus E Jakobsson, Erna Davydova, Jędrzej Małecki, Anders Moen, Pål Ø Falnes
The human methyltransferases (MTases) METTL21A and VCP-KMT (METTL21D) were recently shown to methylate single lysine residues in Hsp70 proteins and in VCP, respectively. The yet uncharacterized MTase encoded by the YNL024C gene in Saccharomyces cerevisiae shows high sequence similarity to METTL21A and VCP-KMT, as well as to their uncharacterized paralogues METTL21B and METTL21C. Despite being most similar to METTL21A, the Ynl024c protein does not methylate yeast Hsp70 proteins, which were found to be unmethylated on the relevant lysine residue...
2015: PloS One
https://read.qxmd.com/read/25144183/selenium-based-s-adenosylmethionine-analog-reveals-the-mammalian-seven-beta-strand-methyltransferase-mettl10-to-be-an-ef1a1-lysine-methyltransferase
#6
JOURNAL ARTICLE
Tadahiro Shimazu, Joaquin Barjau, Yoshihiro Sohtome, Mikiko Sodeoka, Yoichi Shinkai
Lysine methylation has been extensively studied in histones, where it has been shown to provide specific epigenetic marks for the regulation of gene expression; however, the molecular mechanism and physiological function of lysine methylation in proteins other than histones remains to be fully addressed. To better understand the substrate diversity of lysine methylation, S-adenosylmethionine (SAM) derivatives with alkyne-moieties have been synthesized. A selenium-based SAM analog, propargylic Se-adenosyl-l-selenomethionine (ProSeAM), has a wide spectrum of reactivity against various lysine methyltransferases (KMTs) with sufficient stability to support enzymatic reactions in vitro...
2014: PloS One
https://read.qxmd.com/read/23921388/identification-and-characterization-of-a-novel-human-methyltransferase-modulating-hsp70-protein-function-through-lysine-methylation
#7
JOURNAL ARTICLE
Magnus E Jakobsson, Anders Moen, Luc Bousset, Wolfgang Egge-Jacobsen, Stefan Kernstock, Ronald Melki, Pål Ø Falnes
Hsp70 proteins constitute an evolutionarily conserved protein family of ATP-dependent molecular chaperones involved in a wide range of biological processes. Mammalian Hsp70 proteins are subject to various post-translational modifications, including methylation, but for most of these, a functional role has not been attributed. In this study, we identified the methyltransferase METTL21A as the enzyme responsible for trimethylation of a conserved lysine residue found in several human Hsp70 (HSPA) proteins. This enzyme, denoted by us as HSPA lysine (K) methyltransferase (HSPA-KMT), was found to catalyze trimethylation of various Hsp70 family members both in vitro and in vivo, and the reaction was stimulated by ATP...
September 27, 2013: Journal of Biological Chemistry
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