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https://www.readbyqxmd.com/read/28434178/massilia-chloroacetimidivorans-sp-nov-a-chloroacetamide-herbicide-degrading-bacterium-isolated-from-soil
#1
Hyosun Lee, Dong-Uk Kim, Sooyeon Park, Jung-Hoon Yoon, Jong-Ok Ka
A Gram-stain negative, rod-shaped, aerobic bacterial strain, designated TA-C7e(T), was isolated from an agricultural soil obtained from Taean region, Korea. Phylogenetically, the strain was grouped with the genus Massilia and shared 95.33-97.97% 16S rRNA sequence similarity with the type strains of other species of the genus Massilia. The DNA-DNA hybridisation between TA-C7e(T) and Massilia haematophila KACC 13771(T), Massilia suwonesis KACC 12635(T), and Massilia yuzhufengensis KACC 16569(T) revealed a low level of relatedness (<40%)...
April 22, 2017: Antonie Van Leeuwenhoek
https://www.readbyqxmd.com/read/28428295/multiple-genome-sequences-of-heteropolysaccharide-forming-acetic-acid-bacteria
#2
Julia U Brandt, Frank Jakob, Andreas J Geissler, Jürgen Behr, Rudi F Vogel
We report here the complete genome sequences of the acetic acid bacteria (AAB) Acetobacter aceti TMW 2.1153, A. persici TMW 2.1084, and Neoasaia chiangmaiensis NBRC 101099, which secrete biotechnologically relevant heteropolysaccharides (HePSs) into their environments. Upon genome sequencing of these AAB strains, the corresponding HePS biosynthesis pathways were identified.
April 20, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28401363/characterization-of-marinovum-faecis-sp-nov-an-alphaproteobacterium-isolated-from-marine-sediment
#3
Jaewoo Yoon, So Young Kim, Songhee Park, Hyukjae Choi
A Gram-negative, strictly aerobic, chemoheterotrophic, beige-pigmented, ovoid bacterium, designated YP194(T), was isolated from marine sediment in the Republic of Korea. A phylogenetic analysis based on the 16S rRNA gene sequence indicated that the novel marine strain belongs to the family Rhodobacteraceae of the class Alphaproteobacteria, with high sequence similarity (98.4%) to Marinovum algicola FF3(T). The DNA-DNA relatedness values between strains YP194(T) and M. algicola FF3(T) were 34.1 ± 2.7%. The DNA G+C content of strain YP194(T) was 63...
April 11, 2017: Antonie Van Leeuwenhoek
https://www.readbyqxmd.com/read/28400025/influence-of-levan-producing-acetic-acid-bacteria-on-buckwheat-sourdough-breads
#4
Tharalinee Ua-Arak, Frank Jakob, Rudi F Vogel
Buckwheat sourdoughs supplemented with molasses as natural sucrose source were fermented with levan-producing Gluconobacter (G.) albidus TMW 2.1191 and Kozakia (K.) baliensis NBRC 16680. Cell growth, concomitant levan and low-molecular-weight metabolite production were monitored. Sourdough breads were prepared with different sourdoughs from both strains (24, 30 and 48 h fermentation, respectively) and analyzed with respect to bread volume, crumb hardness and sensory characteristics. During fermentation, levan, acetic and gluconic acids were increasingly produced, while spontaneously co-growing lactic acid bacteria additionally formed acetic and lactic acids...
August 2017: Food Microbiology
https://www.readbyqxmd.com/read/28378221/bioresolution-of-racemic-phenyl-glycidyl-ether-by-a-putative-recombinant-epoxide-hydrolase-from-streptomyces-griseus-nbrc-13350
#5
Priya Saini, Naveen Kumar, Shadil Ibrahim Wani, Shilpi Sharma, Swapandeep Singh Chimni, Dipti Sareen
In order to produce enantiomerically pure epoxides for the synthesis of value-added chemicals, a novel putative epoxide hydrolase (EH) sgeh was cloned and overexpressed in pET28a/Escherichia coli BL21(DE3). The 1047 bp sgeh gene was mined from Streptomyces griseus NBRC 13350 genome sequence. The recombinant hexahistidyl-tagged SGEH was purified (16.6-fold) by immobilized metal-affinity chromatography, with 90% yield as a homodimer of 100 kDa. The recombinant E. coli whole cells overexpressing SGEH could kinetically resolve racemic phenyl glycidyl ether (PGE) into (R)-PGE with 98% ee, 40% yield, and enantiomeric ratio (E) of 20...
May 2017: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28360164/draft-genome-sequence-of-caenibacillus-caldisaponilyticus-b157-t-a-thermophilic-and-phospholipase-producing-bacterium-isolated-from-acidulocompost
#6
Yoshiyuki Tsujimoto, Ryo Saito, Takehiko Sahara, Nobutada Kimura, Naoki Tsuruoka, Yasushi Shigeri, Kunihiko Watanabe
Caenibacillus caldisaponilyticus B157(T) (= NBRC 111400(T) = DSM 101100(T)), in the family Sporolactobacillaceae, was isolated from acidulocompost as a thermophilic and phospholipid-degrading bacterium. Here, we report the 3.36-Mb draft genome sequence, with a G+C content of 51.8%, to provide the genetic information coding for phospholipases.
March 30, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28342817/complete-genome-sequence-of-streptomyces-griseochromogenes-atcc-14511-t-a-producer-of-nucleoside-compounds-and-diverse-secondary-metabolites
#7
Lijuan Wu, Guoqing Chen, Guozhong Feng
ATCC 14511(T) (=DSM 40499, =NBRC 13413) is a type strain of Streptomyces griseochromogenes. It is known as a producer of nucleoside antibiotic, blasticidin S. In this report we present the complete genome sequence of S. griseochromogenes ATCC 14511(T), which consists of 10,764,674bp with a linear chromosome, 9822 protein-coding genes, 6 rRNA operons, 74 tRNA and 3 sRNA. The genomic analysis revealed that 52 putative gene clusters are involved in the biosynthesis of secondary metabolites, including four gene clusters of nucleoside antibiotics...
March 22, 2017: Journal of Biotechnology
https://www.readbyqxmd.com/read/28280009/complete-genome-sequence-of-spiroplasma-sp-nbrc-100390
#8
Mindia Haryono, Wen-Sui Lo, Gail E Gasparich, Chih-Horng Kuo
Spiroplasma sp. NBRC 100390 was initially described as a duplicate of S. atrichopogonis GNAT3597(T) (=ATCC BAA-520(T)) but later found to be different in the 16S rDNA sequences. Here, we report the complete genome sequence of this bacterium to establish its identity and to facilitate future investigation.
March 9, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28260703/streptomyces-cameroonensis-sp-nov-a-geldanamycin-producer-that-promotes-theobroma-cacao-growth
#9
Thaddée Boudjeko, Romaric Armel Mouafo Tchinda, Mina Zitouni, Joëlle Aimée Vera Tchatchou Nana, Sylvain Lerat, Carole Beaulieu
The taxonomy of an actinobacterial strain, designated JJY4(T), was established using a polyphasic approach. JJY4(T) was isolated from the rhizosphere of Chromolaena odorata in Yaoundé (Cameroon) during a project for the selection of biological control agents. Strain JJY4(T) exhibited antimicrobial activities against bacteria, fungi, and oomycetes. Strain JJY4(T) also exhibited the traits of plant growth-promoting rhizobacteria such as the solubilization of inorganic phosphate, production of siderophores and indole-3-acetic acid, and 1-aminocyclopropane-1-carboxylate deaminase activity...
March 31, 2017: Microbes and Environments
https://www.readbyqxmd.com/read/28251548/jindonia-aestuariivivens-gen-nov-sp-nov-isolated-from-a-tidal-flat-on-the-south-western-sea-in-republic-of-korea
#10
Sooyeon Park, Sun Young Yoon, Min-Ji Ha, Jung-Hoon Yoon
A Gram-stain-negative, aerobic, non-flagellated, and coccoid, ovoid or rod-shaped bacterium, designated JDTF-65(T), was isolated from a tidal flat on the south-western sea in Republic of Korea. Strain JDTF-65(T) grew optimally at 25°C, at pH 7.0-8.0 and in the presence of 2.0% (w/v) NaCl. Strain JDTF-65(T) exhibited 16S rRNA gene sequence similarities of 97.1-97.6% to the type strains of 'Aliisedimentitalea scapharcae', Phaeobacter gallaeciensis, Phaeobacter inhibens, Leisingera aquimarina, Tropicibacter litoreus, Sulfitobacter pseudonitzschiae, and Pseudoseohaeicola caenipelagi...
March 1, 2017: Journal of Microbiology / the Microbiological Society of Korea
https://www.readbyqxmd.com/read/28231272/vibrio-japonicus-sp-nov-a-novel-member-of-the-nereis-clade-in-the-genus-vibrio-isolated-from-the-coast-of-japan
#11
Hiroyasu Doi, Ikuko Osawa, Hayamitsu Adachi, Manabu Kawada
A novel Vibrio strain, JCM 31412T, was isolated from seawater collected from the Inland Sea (Setonaikai), Japan, and characterized as a Gram-negative, oxidase-positive, catalase-negative, facultatively anaerobic, motile, ovoid-shaped bacterium with one polar flagellum. Based on 16S rDNA gene identity, strain JCM 31412T showed a close relationship with type strains of Vibrio brasiliensis (LMG 20546T, 98.2% identity), V. harveyi (NBRC 15634T, 98.2%), V. caribbeanicus (ATCC BAA-2122T, 97.8%) and V. proteolyticus (NBRC 13287T, 97...
2017: PloS One
https://www.readbyqxmd.com/read/28209826/complete-genome-sequence-of-the-polychlorinated-biphenyl-degrading-bacterium-pseudomonas-putida-kf715-nbrc-110667-isolated-from-biphenyl-contaminated-soil
#12
Hikaru Suenaga, Atsushi Yamazoe, Akira Hosoyama, Nobutada Kimura, Jun Hirose, Takahito Watanabe, Hidehiko Fujihara, Taiki Futagami, Masatoshi Goto, Kensuke Furukawa
Pseudomonas putida KF715 (NBRC 110667) utilizes biphenyl as a sole source of carbon and degrades polychlorinated biphenyls (PCBs). Here, we report a complete genome sequence of the KF715 strain, which comprises a circular chromosome and four plasmids. Biphenyl catabolic genes were located on the largest plasmid, pKF715A.
February 16, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28209823/draft-genome-sequencing-of-the-highly-halotolerant-and-allopolyploid-yeast-zygosaccharomyces-rouxii-nbrc-1876
#13
Atsushi Sato, Kenichiro Matsushima, Kenshiro Oshima, Masahira Hattori, Yasuji Koyama
The highly halotolerant and allopolyploid yeast Zygosaccharomyces rouxii is industrially used for the food production in high concentrations of salt, such as brewing soy sauce and miso paste. Here, we report the draft genome sequence of Z. rouxii NBRC 1876 isolated from miso paste.
February 16, 2017: Genome Announcements
https://www.readbyqxmd.com/read/28174421/streptomyces-euryhalinus-sp-nov-a-new-actinomycete-isolated-from-a-mangrove-forest
#14
Kaushik Biswas, Jayanta D Choudhury, Riddhi Mahansaria, Malay Saha, Joydeep Mukherjee
A Gram-positive, aerobic, non-motile actinomycete (strain MS 3/20(T)) was isolated from the sediment of the Sundarbans mangrove forest in India. On International Streptomyces Project (ISP) medium 2, the isolate produced yellowish brown to red aerial hyphae that carried spiny-surfaced spores in a retinaculum-apertum arrangement. Whole-cell hydrolysate of the strain contained LL-diaminopimelic acid and galactose. Predominant menaquinones were MK-9(H8) and MK-9(H6). Diagnostic polar lipids were glycolipid, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, unidentified phospholipid and unidentified amino lipid...
February 8, 2017: Journal of Antibiotics
https://www.readbyqxmd.com/read/28155814/nonomuraea-rhodomycinica-sp-nov-isolated-from-peat-swamp-forest-soil-in-thailand
#15
Paranee Sripreechasak, Wongsakorn Phongsopitanun, Khomsan Supong, Pattama Pittayakhajonwut, Takuji Kudo, Moriya Ohkuma, Somboon Tanasupawat
The taxonomic position of actinomycete, strain NR4-ASC07T isolated from soil sample collected from Sirindhorn peat swamp forest, Narathiwat Province, Thailand, was clarified using a polyphasic approach. On the basis of morphological and chemotaxonomic characteristics, it was classified in the members of the genus Nonomuraea. It produced tightly closed spiral spore chains on aerial mycelium as well as forming the pseudosporangium. Whole-cell hydrolysate contained meso-diaminopimelic acid, glucose, ribose, madurose and mannose...
February 2, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28141501/microbulbifer-aestuariivivens-sp-nov-isolated-from-a-tidal-flat
#16
Sooyeon Park, Sun Young Yoon, Min-Ji Ha, Jung-Hoon Yoon
A Gram-stain-negative, non-motile, aerobic and coccoid or rod-shaped bacterium, designated GHTF-23T, was isolated from a tidal flat on the South Sea, South Korea. Strain GHTF-23T grew optimally at 37 °C, at pH 6.5-7.5 and in the presence of 2.0 % (w/v) NaCl. In the neighbour-joining phylogenetic tree based on 16S rRNA gene sequences, strain GHTF-23T fell within the clade comprising the type strains of Microbulbifer species. Strain GHTF-23T exhibited 16S rRNA gene sequence similarities of 97.1-97.9 % to the type strains of M...
January 28, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28128318/pantoea-alhagi-a-novel-endophytic-bacterium-with-ability-to-improve-growth-and-drought-tolerance-in-wheat
#17
Chaoqiong Chen, Kaiyun Xin, Hao Liu, Juanli Cheng, Xihui Shen, Yao Wang, Lei Zhang
A novel strain LTYR-11Z(T) that exhibited multiple plant growth promoting (PGP) traits was isolated from the surface-sterilized leaves of Alhagi sparsifolia Shap. (Leguminosae), which reprsents one of the top drought tolerant plants in north-west China. Phylogenetic analysis of 16S rRNA gene sequences and multilocus sequence analysis based on partial sequences of atpD, gyrB, infB and rpoB genes revealed that strain LTYR-11Z(T) was a member of the genus Pantoea, with Pantoea theicola NBRC 110557(T) and Pantoea intestinalis DSM 28113(T) as the closest phylogenetic relatives...
January 27, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28126050/rhodanobacter-rhizosphaerae-sp-nov-isolated-from-soil-of-ginseng-rhizosphere
#18
Geon-Yeong Cho, Jae-Chan Lee, Kyung-Sook Whang
A Gram-stain-negative, aerobic, non-motile, non-spore-forming, yellow and rod-shaped bacterium, designated strain CR164T, was isolated from the rhizosphere soil of a ginseng field at Geumsan in Korea. Strain CR164T grew between 15 and 37 °C (optimal growth at 28 °C), between pH 6.0 and 9.0 (optimal growth at pH 7.0) and at salinities of 0-1.0 % (w/v) NaCl, growing optimally in the absence of NaCl. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain CR164T belongs to the genus Rhodanobacter, showing the highest sequence similarity to Rhodanobacter caeni MJ01T (98...
January 26, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28124782/azohydromonas-riparia-sp-nov-and-azohydromonas-ureilytica-sp-nov-isolated-from-a-riverside-soil-in-south-korea
#19
Tuan Manh Nguyen, Jaisoo Kim
White and pale yellow coloured bacteria were isolated from the riverside soil, Daejeon, South Korea, and were designated UCM-11(T), UCM-F25, and UCM-80(T). We found that all strains were able to reduce nitrate, and the cells were aerobic and motile. The DNA G+C contents of UCM-11(T), UCM-F25, and UCM-80(T) were between 68.9 to 71.2 mol% and the main ubiquinone was observed as Q-8. Based on16S rRNA gene sequences, strains UCM-11(T) and UCM-F25 were found to closely match with Azohydromonas australica IAM 12664(T) (98...
January 26, 2017: Journal of Microbiology / the Microbiological Society of Korea
https://www.readbyqxmd.com/read/28118143/rubrivirga-profundi-sp-nov-isolated-from-deep-sea-water-and-emended-description-of-the-genus-rubrivirga
#20
Jaeho Song, Yochan Joung, Sanghwa Park, Jang-Cheon Cho, Kazuhiro Kogure
A Gram-staining-negative, rod-shaped, facultatively anaerobic, non-motile and pale-red-pigmented bacterium, designated SAORIC-476T, was isolated from deep-sea water from the Pacific Ocean. 16S rRNA gene sequence analyses showed that strain SAORIC-476T was most closely related to Rubrivirga marina SAORIC-28T (96.8 % similarity) and formed a robust phylogenetic clade with Rubrivirga marina of the family Rhodothermaceae. Optimal growth of strain SAORIC-476T was observed at 25 °C, pH 7.5 and in the presence of 3...
December 9, 2016: International Journal of Systematic and Evolutionary Microbiology
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