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https://www.readbyqxmd.com/read/27902298/description-of-pseudactinotalea-terrae-gen-nov-sp-nov-isolated-from-greenhouse-soil-and-proposal-to-reclassify-actinotlea-suaedae-as-pseudactinotalea-suaedae-comb-nov
#1
Hayoung Cho, Moriyuki Hamada, Jae-Hyung Ahn, Hang-Yeon Weon, Jae-Ho Joa, Ken-Ichiro Suzuki, Soon-Wo Kwon, Soo-Jin Kim
One bacterial strain, designated 5GHs33-3T, was isolated from greenhouse soil collected from Yongin region, Gyeonggi province, South Korea. It was aerobic, Gram-stain-positive, flagellated, rod-shaped bacterium. The strain grew at the range of 4-37 °C (optimally 28-30 °C), pH 6.0-10.0 (optimally pH 7.0) and 0-7 % (w/v) NaCl concentrations (optimally, 0 %). The 16S rRNA gene sequence analysis revealed that it had high sequence similarity with Actinotalea suaedae EGI 60002T (98.4 %), Actinotalea ferrariae CF5-4T (96...
November 30, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902296/allostreptomyces-psammosilenae-gen-nov-sp-nov-an-endophytic-actinobacterium-isolated-from-the-roots-of-psammosilene-tunicoides-and-emended-description-of-the-family-streptomycetaceae-waksman-and-henrici-1943-al-emend-rainey-et-al-1997-emend-kim-et-al-2003-emend
#2
Mei-Juan Huang, Manik Prabhu Narsing Rao, Nimaichand Salam, Min Xiao, Hai-Quan Huang, Wen-Jun Li
A Gram-staining positive actinobacterium, designated strain YIM DR4008T was isolated from the root sample of Psammosilene tunicoides collected from Lijiang, Yunnan, China. Strain YIM DR4008T could grow at temperature ranging from 10 to 50 °C (optimum at 28-30 °C), pH 5.0-11.0 (optimum pH 7.0) and in the presence of up to 4 % (w/v) NaCl. Sequence analysis of the 16S ribosomal RNA gene revealed that strain YIM DR4008T shared highest similarity (95.0 %) with Streptomyces griseoplanus NBRC 12779T and < 95 % similarity with other known members of the genera Streptomyces, Kitasatospora and Streptacidiphilus...
October 27, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902283/lutibacter-litorisediminis-sp-nov-isolated-from-a-tidal-flat
#3
Sooyeon Park, Sun Young Yoon, Min-Ji Ha, Yong-Taek Jung, Jung-Hoon Yoon
A Gram-stain-negative, non-motile, aerobic and rod-shaped bacterium, designated OITF-20T, was isolated from the tidal flat in Oido, an island of South Korea. The novel strain grew optimally at 25 °C, at pH 7.0-8.0 and in the presence of 1.0-2.0 % (w/v) NaCl. In the neighbour-joining phylogenetic tree based on 16S rRNA gene sequences, strain OITF-20T fell within the clade comprising the type strains of Lutibacter species. Strain OITF-20T exhibited 16S rRNA gene sequence similarity values of 97.8, 97.6 and 97...
November 14, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902281/acidicapsa-acidisoli-sp-nov-from-the-acidic-soil-of-a-deciduous-forest
#4
Heizo Matsuo, Chisaki Kudo, Juan Li, Akio Tonouchi
A bacterial strain designated strain SK-11T was isolated from the acidic soil of a deciduous forest in the Shirakami Mountains in Japan. Cells of strain SK-11T were aerobic, non-motile, Gram-stain-negative rods, 0.7-1.0 µm in width and 1.0-1.4 µm in length. The pH range for growth was between 4.0 and 5.5, with an optimum at 5.0. The temperature range for growth was between 10°C and 35°C, with an optimum at around 25-30°C. Strain SK-11T utilized various carbohydrates as growth substrates as well as yeast extract and protein hydrolysates...
November 23, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902265/oharaeibacter-diazotrophicus-gen-nov-sp-nov-a-diazotrophic-and-facultatively-methylotrophic-bacterium-isolated-from-rice-rhizosphere
#5
Haoxin Lv, Sachiko Masuda, Yoshiko Fujitani, Nurettin Sahin, Akio Tani
A new facultative methanol-utilizing bacterial strain SM30T was isolated from rice rhizosphere. Strain SM30T was Gram-stain negative, aerobic, motile, short rod, and grows optimally at pH 7 and at 28°C. It can tolerate 0 to 2% concentration of NaCl. Based on 16S rRNA gene sequence comparisons, strain SM30T was most closely related to Pleomorphomonas oryzae DSM 16300T, with low similarity of 94.17%. As one of the lanthanide metals, lanthanum could enhance its growth on methanol slightly. Phylogenetic trees based on mxaF, xoxF, and cpn60 genes of SM30T showed its distinct phylogenetic positions with known species...
November 14, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902261/paenibacillus-qinlingensis-sp-nov-an-indole-3-acetic%C3%A2-acid-producing-bacterium-isolated-from-roots-of-sinopodophyllum%C3%A2-hexandrum-royle-ying
#6
Kaiyun Xin, Muhang Li, Chaoqiong Chen, Xu Yang, Qiqi Li, Juanli Cheng, Lei Zhang, Xihui Shen
A novel indole-3-acetic acid-producing bacterium, designated TEGT-2T, was isolated from the roots of Sinopodophyllum hexandrum collected from Qinling Mountains in shaanxi province, Northwestern China, and was subjected to a taxonomic study by using a polyphasic approach. Cells of strain TEGT-2T were Gram-stain-positive, strictly aerobic, endospore-forming rods and motile by means of peritrichous flagella. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain TEGT-2T was a member of the genus Paenibacillus, exhibiting the highest sequence similarity to Paenibacillus pectinilyticus KCTC 13222T (97...
November 16, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902258/marinobacter-halotolerans-sp-nov-a-halophilic-bacterium-isolated-from-crystallizing-pond-of-saltern
#7
Ju-Ok Kim, Hyo-Jin Lee, Song-Ih Han, Kyung-Sook Whang
A Gram-staining-negative, moderately halophilic, motile bacterium, designated strain CP12T, was isolated from crystallizing pond of saltern of the Yellow Sea in Korea. Cells of strain CP12T were observed non-spore-forming rods and produce whitish yellow-coloured colonies. Growth was observed at 10-37 °C (optimum 37 °C), at pH 6.0-9.0 (optimum 7.0), and in the presence of 0.5-20 % (w/v) NaCl (optimum 3 %). Phylogenetic analysis based on the 16S rRNA gene sequence revealed that strain CP12T was closely related to Marinobacter flavimaris SW-145T (98...
November 9, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902254/streptomyces-krungchingensis-sp-nov-isolated-from-soil-in-thailand
#8
Paranee Sripreechasak, Wongsakorn Phongsopitanun, Tomohiko Tamura, Somboon Tanasupawat
A novel actinomycete, designated KC-035T, was isolated from soil collected from Krung Ching Waterfall National Park, Nakhon Si Thammarat Province, Thailand. Its taxonomic position was determined using the polyphasic approach. The strain had morphological and chemotaxonomic properties typical of the members of the genus Streptomyces; flexuous spore chain; LL-diaminopimelic acid in cell wall peptidoglycan; MK-9(H8), MK-9(H6) and MK-9(H4) as menaquinones; diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol and phosphatidylinositol mannoside as phospholipids; anteiso-C15:0, C16:0, iso-C16:0, iso-C15:0 and iso-C14:0 as major cellular fatty acids; and 72 mol% of the DNA G+C content...
October 12, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902230/roseitalea-porphyridii-gen-nov-sp-nov-isolated-from-a-red-alga-and-reclassification-of-hoeflea-suaedae-chung-et-al-2013-as-pseudohoeflea-suaedae-gen-nov-comb-nov
#9
Jong Woo Hyeon, Sang Eun Jeong, Kyunghwa Baek, Che Ok Jeon
A Gram-staining-negative, strictly aerobic bacterial strain, designated MA7-20T, was isolated from a marine alga, Porphyridium marinum, in Korea. Cells showing oxidase-positive and catalase-positive activities were motile rods with bipolar flagella. Growth of strain MA7-20T was observed at 15-45 C (optimum, 30-37 C), at pH 6.0-10.5 (optimum, pH 7.0-8.0) and in the presence of 0-7 % (w/v) NaCl (optimum, 2-3 %). Strain MA7-20T contained summed feature 8 (comprising C18:1 ω7c/C18:1 ω6c) and 11-methyl-C18:1 ω7c and C18:0 as the major fatty acids and ubiquinone-10 as the sole isoprenoid quinone...
November 2, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902221/streptomyces-fuscichromogenes-sp-nov-a-novel-actinomycete-from-soil
#10
Hao Zhang, Jimei Zheng, Junli Zhuang, Yuhua Xin, Xiaowei Zheng, Jianli Zhang
A novel actinomycete, designated strain m16T, was isolated from a soil sample collected from Xishuangbanna's tropical rain forest, a prefecture in Yunnan Province, south-west China, and characterized by using polyphasic taxomomy. Cells were aerobic, Gram-positive and spore chains were observed to be of the helical type, with elliptical spores and smooth spore surfaces. The novel strain grew over a temperature range of 15-35 °C, at pH values of 5.0-11.0 and in the presence of 0-3 % (w/v) NaCl. The DNA G+C content of strain m16T was 70...
October 13, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902218/aliidongia-dinghuensis-gen-nov-sp-nov-poly-%C3%AE-hydroxybutyrate-producing-bacteria-isolated-from-pinus-massoniana-forest-soil
#11
Mei-Hong Chen, Xiang-Yue Zhou, Fang-Hong Ou, Fan Xia, Ying-Ying Lv, Li-Hong Qiu
A Gram-stain-negative, aerobic, motile, rod-shaped bacterium, designated as 7M-Z19T was isolated from a soil sample collected from the Pinus massoniana forest of Dinghushan Biosphere Reserve, Guangdong Province, PR China. Strain 7M-Z19T grew at pH 4.5-7.5 (optimum 6.0-6.5), 10 to 37 °C (optimum 28 °C) and NaCl concentration up to 2.0 % (optimum 0 %, w/v). Iso-C17:0, iso-C18:1 ω7c and C19:0 ω8c cyclo were the major fatty acids (> 10 %) while ubiquinone-10 was the only respiratory quinone detected in 7M-Z19T...
October 24, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902216/flavobacterium-gilvum-sp-nov-isolated-from-stream-water
#12
Su-Kyoung Shin, Yongheon Ha, Yong-Joon Cho, Soonsung Kwon, Dongeun Yong, Hana Yi
A cream-colored, non-gliding, aerobic Flavobacterium strain, designated EM1308T, was isolated from stream water. Gene sequence analysis of the 16S rRNA indicated that this isolate is closely related to Flavobacterium glycines NBRC 105008T (97.3 %) and Flavobacterium piscis CCUG 60099T (97.2 %). To evaluate the genomic relatedness of the isolate with its neighbors, the whole genome sequences of strain EM1308T and type strains of F. glycines and F. piscis were determined. The average nucleotide identities revealed that strain EM1308T is independent from other Flavobacterium species...
October 21, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902210/nonlabens-halophilus-sp-nov-isolated-from-reclaimed-land
#13
Mihee Oh, Jong-Hwa Kim, Nagamani Bora, Wonyong Kim
A Gram-stain-negative, orange pigmented, non-spore-forming, non-motile, aerobic, rod-shaped bacterial strain, designated CAU 1131T, was isolated from reclaimed land. Strain CAU 1131T grew optimally at 30C and at pH 6.5 in the presence of 4% (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain CAU 1131T was grouped into the genus Nonlabens, the most closely related to N. marinus (similarity 95.9%). The strain possessed MK-6 as the predominant menaquinone and iso-C15:0, iso-C17:0 3-OH, and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c) as the major cellular fatty acids and...
October 24, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902206/achromobacter-aloeverae-sp-nov-isolated-from-root-of-aloe-vera-l-burm-f-in-thailand
#14
Nattakorn Kuncharoen, Yuki Muramatsu, Chiyo Shibata, Yuki Kamakura, Yasuyoshi Nakagawa, Somboon Tanasupawat
Two Gram-stain-negative, strictly aerobic, rod-shaped bacteria, designated strains AVA-1T and AVA-2, were isolated from the root of Aloe vera (L.) Brum.f. in Chachoengsao Province, Thailand. The strains contained cytochrome oxidase and catalase. They grew in 4 % (w/v) NaCl, at pH range 6.0-9.0 (optimally at pH 7) and at 20-42 ºC (optimally at 30-37 ºC). The major isoprenoid quinone was ubiquinone with eight isoprene units (Q-8). The major fatty acids wereC16:0and C17:0cyclo. On the basis of 16S rRNA gene sequence analysis, the strains belonged to the genus Achromobacter and were closely related to Achromobacter xylosoxidans NBRC 15126T (98...
October 11, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902203/microvirga-soli-sp-nov-a-novel-alphaproteobacterium-of-the-genus-microvirga-isolated-from-soil
#15
Ram Hari Dahal, Jaisoo Kim
An aerobic, Gram stain-negative, catalase-positive and oxidase-negative, non-motile, non-spore-forming, rod-shaped, pink-pigmented bacterium designated strain R491T was isolated from soil. Flexirubin-type pigments were absent. A phylogenetic analysis based on its 16S rRNA gene sequence revealed that strain R491T formed a lineage within the family Methylobacteriaceae of the phylum Proteobacteria that was distinct from various species of the genus Microvirga, including Microvirga aerilata 5420S-16T (97.83 % sequence similarity), Microvirga zambiensis WSM3693T (97...
October 17, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902202/marimonas-arenosa-gen-nov-sp-nov-isolated-from-sea-sand
#16
Chutimon Thongphrom, Jong-Hwa Kim, Jung-Hoon Yoon, Nagamani Bora, Wonyong Kim
A Gram-staining-negative, non-motile, non-spore-forming, aerobic, and short rod-shaped bacterial strain, CAU 1311T, was isolated from sea sand in the Republic of Korea. Strain CAU 1311T grew at temperatures from 20-37˚C, in the range of pH 6.5-10.0, and under various NaCl concentrations from 0-6% (w/v). Phylogenetic analysis based on the 16S rRNA gene sequence of CAU 1311T showed that it formed a distinct lineage within the family Rhodobacteraceae as a separate deep branch, with 96.2% or lower sequence identity to representatives of the genera Marivita, Aestuariivita, Mameliella, Sulfitobacter, and Maritimibacter...
October 17, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902196/primorskyibacter-aestuariivivens-sp-nov-isolated-from-tidal-flat-and-emended-description-of-the-genus-primorskyibacter
#17
Sooyeon Park, Sun Young Yoon, Min-Ji Ha, Yong-Taek Jung, Jung-Hoon Yoon
A Gram-stain-negative, aerobic, non-spore-forming, motile and coccoid, ovoid or rod-shaped bacterial strain, designated OITF-36T, was isolated from a tidal flat in oido, an island of South Korea, and subjected to polyphasic taxonomic study. Strain OITF-36T grew optimally at 30 C, at pH 7.0-8.0 and in the presence of 2.0-3.0 % (w/v) NaCl. Neighbour-joining and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences revealed that strain OITF-36T clustered with the type strains of Primorskyibacter sedentarius and Primorskyibacter insulae, showing 97...
October 9, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902194/flavobacterium-orientale-sp-nov-isolated-from-lake-water
#18
Ai-Hua Li, Hong-Can Liu, Yu-Guang Zhou
Two Gram-stain-negative, obligately aerobic, non-motile, rod-shaped bacterial strains, designated SP3T and SP38, were isolated from a cold-water lake, in the west of China. Polyphasic taxonomy was performed for the strains. Alignment of 16S rRNA gene sequences indicated that strains SP3T and SP38 were associated with the genus Flavobacterium and were most closely related to Flavobacterium lacus NP180T (96.4 % sequence similarity), Flavobacterium ponti GSW-R14T (95.6 %) and Flavobacterium yanchengense hgT (95...
October 17, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902190/polaribacter-haliotis-sp-nov-isolated-from-the-gut-of-abalone-haliotis-discus-hannai
#19
Young-Ok Kim, In-Suk Park, Sooyeon Park, Bo-Hye Nam, Ji-Min Park, Dong-Gyun Kim, Jung-Hoon Yoon
A Gram-stain-negative, aerobic, non-motile and coccoid, ovoid or rod-shaped bacterial strain, designated RA4-7T, was isolated from the gut of an abalone (Haliotis discus hannai) collected from the sea around Jeju island, South Korea, and subjected to a polyphasic taxonomic study. Strain RA4-7T grew optimally at 25 C, at pH 7.0-7.5 and in the presence of 2.0-3.0 % (w/v) NaCl. The phylogenetic trees based on 16S rRNA gene sequences showed that strain RA4-7T belonged to the genus Polaribacter. Strain RA4-7T exhibited 16S rRNA gene sequence similarity values of 97...
October 9, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902189/colwellia-mytili-sp-nov-isolated-from-mussel-mytilus-edulis
#20
Young-Ok Kim, In-Suk Park, Sooyeon Park, Bo-Hye Nam, Yong-Taek Jung, Dong-Gyun Kim, Jung-Hoon Yoon
A Gram-stain-negative, aerobic, motile and rod-shaped bacterial strain, designated RA2-7T, was isolated from a mussel (Mytilus edulis) collected from the South Sea, South Korea, and subjected to a polyphasic taxonomic study. Strain RA2-7T grew optimally at 20 C, at pH 7.0-8.0 and in the presence of 2.0-3.0 % (w/v) NaCl. The phylogenetic trees based on 16S rRNA gene sequences showed that strain RA2-7T belonged to the genus Colwellia. Strain RA2-7T exhibited 16S rRNA gene sequence similarity values of 98.3, 98...
October 11, 2016: International Journal of Systematic and Evolutionary Microbiology
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