keyword
https://read.qxmd.com/read/38630855/evaluation-of-alphafold2-structures-for-hit-identification-across-multiple-scenarios
#1
JOURNAL ARTICLE
Shukai Gu, Yuwei Yang, Yihao Zhao, Jiayue Qiu, Xiaorui Wang, Henry Hoi Yee Tong, Liwei Liu, Xiaozhe Wan, Huanxiang Liu, Tingjun Hou, Yu Kang
The introduction of AlphaFold2 (AF2) has sparked significant enthusiasm and generated extensive discussion within the scientific community, particularly among drug discovery researchers. Although previous studies have addressed the performance of AF2 structures in virtual screening (VS), a more comprehensive investigation is still necessary considering the paramount importance of structural accuracy in drug design. In this study, we evaluate the performance of AF2 structures in VS across three common drug discovery scenarios: targets with holo , apo , and AF2 structures; targets with only apo and AF2 structures; and targets exclusively with AF2 structures...
April 17, 2024: Journal of Chemical Information and Modeling
https://read.qxmd.com/read/38630409/glymphatic-impairment-associated-with-neurocognitive-dysfunction-in-moyamoya-disease
#2
JOURNAL ARTICLE
Chaofan Zeng, Yuanren Zhai, Peicong Ge, Chenglong Liu, Xiaofan Yu, Wei Liu, Junsheng Li, Qiheng He, Xingju Liu, Xun Ye, Qian Zhang, Rong Wang, Yan Zhang, Dong Zhang, Jizong Zhao
Glymphatic system alterations have been proved to be associated with cognitive dysfunction in neurodegenerative diseases. The glymphatic pathway has not been elucidated in moyamoya disease (MMD), which was recognized as a chronic hypoperfusion model for neurodegenerative disease. Here, we aimed to investigate the glymphatic system activity and its relation with neurocognition, and associated hallmarks in MMD. We prospectively recruited 30 MMD patients and 30 matched healthy controls (HC). Participants underwent MRI and neurocognition evaluation...
April 17, 2024: Translational Stroke Research
https://read.qxmd.com/read/38629368/extract-of-gualou-xiebai-herb-pair-improves-lipid-metabolism-disorders-by-enhancing-the-reverse-cholesterol-transport-in-atherosclerosis-mice
#3
JOURNAL ARTICLE
Yarong Liu, Tian Wang, Lidan Ding, Zhenglong Li, Yexiang Zhang, Min Dai, Hongfei Wu
BACKGROUND: Gualou is derived from the fruit of Trichosanthes kirilowii Maxim, while Xiebai from the bulbs of Allium macrostemon Bunge. Gualou and Xiebai herb pair (2:1) is widely used in clinical practice to treat atherosclerotic cardiovascular diseases. However, the mechanism underlying its potential activity on atherosclerosis (AS) has not been fully elucidated. METHODS: The extract of Gualou-Xiebai herb pair (GXE) was prepared from Gualou (80 g) and Xiebai (40 g) by continuous refluxing with 50% ethanol for 2 h at 80°C...
April 15, 2024: Current Neurovascular Research
https://read.qxmd.com/read/38629274/orphan-nuclear-receptor-nr4a3-promotes-vascular-calcification-via-histone-lactylation
#4
JOURNAL ARTICLE
Wenqi Ma, Kangni Jia, Haomai Cheng, Hong Xu, Zhigang Li, Hang Zhang, Hongyang Xie, Lingfang Zhuang, Ziyang Wang, Yuke Cui, Hang Sun, Lei Yi, Zhiyong Chen, Shengzhong Duan, Motoaki Sano, Keiichi Fukuda, Lin Lu, Fei Gao, Ruiyan Zhang, Xiaoxiang Yan
BACKGROUND: Medial arterial calcification is a chronic systemic vascular disorder distinct from atherosclerosis and is commonly observed in patients with chronic kidney disease, diabetes, and aging individuals. We previously showed that NR4A3 (nuclear receptor subfamily 4 group A member 3), an orphan nuclear receptor, is a key regulator in apo (apolipoprotein) A-IV-induced atherosclerosis progression; however, its role in vascular calcification is poorly understood. METHODS: We generated NR4A3-/- mice and 2 different types of medial arterial calcification models to investigate the biological roles of NR4A3 in vascular calcification...
April 17, 2024: Circulation Research
https://read.qxmd.com/read/38628755/integrated-single-cell-and-spatial-transcriptomic-analysis-reveals-ybx1-drives-immune-regulation-in-gbm-progression
#5
JOURNAL ARTICLE
Yanshan Ge, Huiting Weng, Yingnan Sun, Minghua Wu
The RNA modification 5-methylcytosine (m5C) is widespread across various RNA types, significantly impacting RNA stability and translational efficiency. Accumulating evidence highlights its significant role within the tumorigenesis and progression of multiple malignancies. Nevertheless, the specific process through m5C is implicated in Glioblastoma (GBM) remains unclear. We conducted acomprehensive analysis of m5C expression distribution in single-cell GBM data. Our findings revealed elevated m5C scores in GBM single-cell data compared to the normal group...
April 30, 2024: Heliyon
https://read.qxmd.com/read/38628207/anthocyanins-from-lycium-ruthenicum-murray-attenuates-high-fat-diet-induced-hypercholesterolemia-in-apoe-mice-are-related-to-the-modulation-of-gut-microbiota-and-the-ratio-of-conjugated-to-unconjugated-bile-acids-in-fecal-bile-acid-profile
#6
JOURNAL ARTICLE
Meng Zhang, Hui Li, Tingting Tan, Lu Lu, Jia Mi, Abdul Rehman, Yamei Yan, Linwu Ran
Previous findings showed that anthocyanins from Lycium ruthenicum Murray (ACN) reduced HFD-induced hypercholesterolemia by regulating gut microbiota, but the mechanism has not been fully understood. The objective of this research was to know whether the cholesterol-lowering impact of ACN in HFD-induced ApoE-/- mice is related to the gut microbiota-bile acid (BA) metabolism. Twenty-four male ApoE-/- mice were divided into three groups: the Control group, the HFD group, and the HFD + ACN group. Here, we showed that ACN intervention reduced HFD-induced body weight serum concentrations of TC and LDL-C and ameliorated lipid accumulation in the liver and adipose tissues...
April 2024: Food Science & Nutrition
https://read.qxmd.com/read/38627829/gut-microbiota-host-lipid-crosstalk-in-alzheimer-s-disease-implications-for-disease-progression-and-therapeutics
#7
REVIEW
Ya-Xi Luo, Ling-Ling Yang, Xiu-Qing Yao
Trillions of intestinal bacteria in the human body undergo dynamic transformations in response to physiological and pathological changes. Alterations in their composition and metabolites collectively contribute to the progression of Alzheimer's disease. The role of gut microbiota in Alzheimer's disease is diverse and complex, evidence suggests lipid metabolism may be one of the potential pathways. However, the mechanisms that gut microbiota mediate lipid metabolism in Alzheimer's disease pathology remain unclear, necessitating further investigation for clarification...
April 16, 2024: Molecular Neurodegeneration
https://read.qxmd.com/read/38627753/pathophysiology-characterization-of-alzheimer-s-disease-in-south-china-s-aging-population-for-the-greater-bay-area-healthy-aging-brain-study-ghabs
#8
JOURNAL ARTICLE
Zhen Liu, Dai Shi, Yue Cai, Anqi Li, Guoyu Lan, Pan Sun, Lin Liu, Yalin Zhu, Jie Yang, Yajing Zhou, Lizhi Guo, Laihong Zhang, Shuqing Deng, Shuda Chen, Xianfeng Yu, Xuhui Chen, Ruiyue Zhao, Qingyong Wang, Pengcheng Ran, Linsen Xu, Liemin Zhou, Kun Sun, Xinlu Wang, Qiyu Peng, Ying Han, Tengfei Guo
INTRODUCTION: The Guangdong-Hong Kong-Macao Greater-Bay-Area of South China has an 86 million population and faces a significant challenge of Alzheimer's disease (AD). However, the characteristics and prevalence of AD in this area are still unclear due to the rarely available community-based neuroimaging AD cohort. METHODS: Following the standard protocols of the Alzheimer's Disease Neuroimaging Initiative, the Greater-Bay-Area Healthy Aging Brain Study (GHABS) was initiated in 2021...
April 16, 2024: Alzheimer's Research & Therapy
https://read.qxmd.com/read/38627576/structural-dynamics-of-na-and-ca-2-interactions-with-full-size-mammalian-ncx
#9
JOURNAL ARTICLE
Moshe Giladi, Lukáš Fojtík, Tali Strauss, Benny Da'adoosh, Reuben Hiller, Petr Man, Daniel Khananshvili
Cytosolic Ca2+ and Na+ allosterically regulate Na+ /Ca2+ exchanger (NCX) proteins to vary the NCX-mediated Ca2+ entry/exit rates in diverse cell types. To resolve the structure-based dynamic mechanisms underlying the ion-dependent allosteric regulation in mammalian NCXs, we analyze the apo, Ca2+ , and Na+ -bound species of the brain NCX1.4 variant using hydrogen-deuterium exchange mass spectrometry (HDX-MS) and molecular dynamics (MD) simulations. Ca2+ binding to the cytosolic regulatory domains (CBD1 and CBD2) rigidifies the intracellular regulatory loop (5L6) and promotes its interaction with the membrane domains...
April 16, 2024: Communications Biology
https://read.qxmd.com/read/38626913/therapy-combining-glucagon-like-peptide-1-receptor-agonist-with-sodium-glucose-cotransporter-2-inhibitor-suppresses-atherosclerosis-in-diabetic-apoe-deficient-mice
#10
JOURNAL ARTICLE
Masahiro Takubo, Kentaro Watanabe, Hitoki Saito, Genta Kohno, Hisamitsu Ishihara
Background Glucagon-like peptide-1 receptor agonists (GLP-1RAs) and sodium-glucose cotransporter 2 inhibitors (SGLT2i) have beneficial effects on cardiovascular disease in addition to their glucose-lowering effects. We directly compared the effects of these drugs when used individually or in combination on cardiovascular atherosclerotic lesion development using diabetic ApoE-deficient hyperlipidemic mice. Methods We treated ApoE-deficient mice with streptozotocin and nicotinamide, generating a type 2 diabetes model...
April 16, 2024: Experimental and Clinical Endocrinology & Diabetes
https://read.qxmd.com/read/38626867/-re-definition-of-the-holo-and-apo-fur-direct-regulons-of-helicobacter-pylori
#11
JOURNAL ARTICLE
Andrea Vannini, Eva Pinatel, Paolo Emidio Costantini, Simone Pelliciari, Davide Roncarati, Simone Puccio, Gianluca De Bellis, Vincenzo Scarlato, Clelia Peano, Alberto Danielli
Iron homeostasis is a critical process for living organisms because this metal is an essential co-factor for fundamental biochemical activities, like energy production and detoxification, albeit its excess quickly leads to cell intoxication. The protein Fur (ferric uptake regulator) controls iron homeostasis in bacteria by switching from its apo- to holo-form as a function of the cytoplasmic level of ferrous ions, thereby modulating gene expression. The Helicobacter pylori HpFur protein has the rare ability to operate as a transcriptional commutator; apo- and holo-HpFur function as two different repressors with distinct DNA binding recognition properties for specific sets of target genes...
April 14, 2024: Journal of Molecular Biology
https://read.qxmd.com/read/38626384/associations-between-blood-based-biomarkers-and-cognitive-and-functional-trajectories-among-participants-of-the-memento-cohort
#12
JOURNAL ARTICLE
Leslie Grasset, Vincent Bouteloup, Federica Cacciamani, Isabelle Pellegrin, Vincent Planche, Geneviève Chêne, Carole Dufouil
BACKGROUND AND OBJECTIVES: Elevated levels of Alzheimer disease (AD) blood-based biomarkers are associated with accelerated cognitive decline. However, their distinct relationships with specific cognitive and functional domains require further investigation. We aimed at estimating the associations between AD blood-based biomarkers and the trajectories of distinct cognitive and functional domains over a 5-year follow-up period. METHODS: We conducted a clinic-based prospective study using data from the MEMENTO study, a nationwide French cohort...
May 2024: Neurology
https://read.qxmd.com/read/38626254/endothelial-nlrp3-inflammasome-regulation-in-atherosclerosis
#13
JOURNAL ARTICLE
Shuai Guo, Litao Wang, Kaixiang Cao, Ziling Li, Mingchuan Song, Shuqi Huang, Zou Li, Cailing Wang, Peiling Chen, Yong Wang, Xiaoyan Dai, Xianglin Chen, Xiaodong Fu, Du Feng, Jun He, Yuqing Huo, Yiming Xu
AIM: The activation of Nucleotide-binding oligomerization domain-like receptor protein 3 (NLRP3) inflammasome in endothelial cells (ECs) contributes to vascular inflammation in atherosclerosis. Considering the high glycolytic rate of ECs, we delineated whether and how glycolysis determines endothelial NLRP3 inflammasome activation in atherosclerosis. METHODS AND RESULTS: Our results demonstrated a significant upregulation of 6-Phosphofructo-2-Kinase/Fructose-2,6-Biphosphatase 3 (PFKFB3), a key regulator of glycolysis, in human and mouse atherosclerotic endothelium, which positively correlated with NLRP3 levels...
April 16, 2024: Cardiovascular Research
https://read.qxmd.com/read/38625929/prevalence-of-dysbetalipoproteinemia-in-the-uk-biobank-according-to-different-diagnostic-criteria
#14
JOURNAL ARTICLE
Martine Paquette, Mark Trinder, Simon-Pierre Guay, Liam R Brunham, Alexis Baass
CONTEXT: Dysbetalipoproteinemia (DBL) is a multifactorial disorder that disrupts the normal metabolism of remnant lipoproteins, causing increased risk of cardiovascular disease. However, establishing a proper diagnosis is difficult and the true prevalence of the disease in the general population remains unknown. OBJECTIVE: The objectives were to study the prevalence of the disease and to validate the performance of different clinical diagnostic criteria in a large population-based cohort...
April 16, 2024: Journal of Clinical Endocrinology and Metabolism
https://read.qxmd.com/read/38625441/the-apo-gene-s-genetic-variants-hidden-role-in-asian-vascular-risk
#15
REVIEW
Valentinus Besin, Farizky Martriano Humardani, Trilis Yulianti, Sulistyo Emantoko Dwi Putra, Rina Triana, Matthew Justyn
Vascular risk factors, including diabetes, hypertension, hyperlipidemia, and obesity, pose significant health threats with implications extending to neuropsychiatric disorders such as stroke and Alzheimer's disease. The Asian population, in particular, appears to be disproportionately affected due to unique genetic predispositions, as well as epigenetic factors such as dietary patterns and lifestyle habits. Existing management strategies often fall short of addressing these specific needs, leading to greater challenges in prevention and treatment...
April 16, 2024: Neurogenetics
https://read.qxmd.com/read/38624221/twenty-four-hour-ambulatory-blood-pressure-monitoring-parameters-during-pregnancy-a-pilot-study
#16
JOURNAL ARTICLE
Mulubrhan F Mogos, Soojung Ahn, Chorong Park, Marianna LaNoue, Sarah Osmundson, James M Muchira
Introduction: Maternal blood pressure (BP) is a critical cardiovascular marker with profound implications for maternal and fetal well-being, particularly in the detection of hypertensive disorders during pregnancy. Although conventional clinic-based BP (CBP) measurements have traditionvally been used, monitoring 24-hour ambulatory BP (ABP) has emerged as a more reliable method for assessing BP levels and diagnosing conditions such as gestational hypertension and preeclampsia/eclampsia. This study aimed to assess the feasibility and acceptability of 24-hour ABP monitoring in pregnant women and report on various ABP parameters, including ambulatory blood pressure variability (ABPV)...
April 16, 2024: Journal of Women's Health
https://read.qxmd.com/read/38623824/design-and-synthesis-of-peptides-as-stabilizers-of-histone-deacetylase-4
#17
JOURNAL ARTICLE
Annika Lill, Markus Schweipert, Thomas Nehls, Eva Wurster, Frederik Lermyte, Franz-Josef Meyer-Almes, Katja Schmitz
Histone deacetylase 4 (HDAC4) contributes to gene repression by complex formation with HDAC3 and the corepressor silencing mediator for retinoid or thyroid hormone receptors (SMRT). We hypothesized that peptides derived from the class IIa specific binding site of SMRT would stabilize a specific conformation of its target protein and modulate its activity. Based on the SMRT-motif 1 (SM1) involved in the interaction of SMRT with HDAC4, we systematically developed cyclic peptides that exhibit Ki values that are 9 to 56 times lower than that of the linear SMRT peptide...
April 16, 2024: Journal of Peptide Science
https://read.qxmd.com/read/38623255/differences-of-individual-gray-matter-networks-between-mci-patients-who-converted-to-ad-within-3%C3%A2-years-and-nonconverters
#18
JOURNAL ARTICLE
Baiwan Zhou, Yueqi Zhao, Xiaojia Wu
OBJECTIVE: Here we aimed to explore the differences in individual gray matter (GM) networks at baseline in mild cognitive impairment patients who converted to Alzheimer's disease (AD) within 3 years (MCI-C) and nonconverters (MCI-NC). MATERIALS AND METHODS: Data from 461 MCI patients (180 MCI-C and 281 MCI-NC) were obtained from the Alzheimer's Disease Neuroimaging Initiative (ADNI). For each subject, a GM network was constructed using 3D-T1 imaging and the Kullback-Leibler divergence method...
April 15, 2024: Heliyon
https://read.qxmd.com/read/38622667/quinic-acid-regulated-tma-tmao-related-lipid-metabolism-and-vascular-endothelial-function-through-gut-microbiota-to-inhibit-atherosclerotic
#19
JOURNAL ARTICLE
Qiao Jin, Chiyuan Zhang, Ran Chen, Luping Jiang, Hongli Li, Pengcui Wu, Liang Li
BACKGROUND: Quinic acid (QA) and its derivatives have good lipid-lowering and hepatoprotective functions, but their role in atherosclerosis remains unknown. This study attempted to investigate the mechanism of QA on atherogenesis in Apoe-/- mice induced by HFD. METHODS: HE staining and oil red O staining were used to observe the pathology. The PCSK9, Mac-3 and SM22a expressions were detected by IHC. Cholesterol, HMGB1, TIMP-1 and CXCL13 levels were measured by biochemical and ELISA...
April 15, 2024: Journal of Translational Medicine
https://read.qxmd.com/read/38621622/circhipk3-targets-drp1-to-mediate-hydrogen-peroxide-induced-necroptosis-of-vascular-smooth-muscle-cells-and-atherosclerotic-vulnerable-plaque-formation
#20
JOURNAL ARTICLE
Xiaolu Li, Yanyan Yang, Zhibin Wang, Xiaotong Lin, Xiuxiu Fu, Xiangqin He, Meixin Liu, Jian-Xun Wang, Tao Yu, Pin Sun
INTRODUCTION: Necroptosis triggered by H2 O2 is hypothesized to be a critical factor in the rupture of atherosclerotic plaques, which may precipitate acute cardiovascular events. Nevertheless, the specific regulatory molecules of this development remain unclear. We aims to elucidate a mechanism from the perspective of circular RNA. OBJECTIVES: There are few studies on circRNA in VSMCs necroptosis. The objective of our research is to shed light on the intricate roles that circHIPK3 plays in the process of necroptosis in VSMCs and the development of atherosclerotic plaques that are prone to rupture...
April 13, 2024: Journal of Advanced Research
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