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Signal detection

Wankun Chen, Yajun Xu, Jing Zhong, Huihui Wang, Meilin Weng, Qian Cheng, Qichao Wu, Zhirong Sun, Hui Jiang, Minmin Zhu, Yu Ren, Pingbo Xu, Jiawei Chen, Changhong Miao
Malignant fibrous histiocytoma amplified sequence 1 (MFHAS1) is a predicted oncoprotein that demonstrates tumorigenic activity in vivo; however, the mechanisms involved are unknown. Macrophages are divided into the pro-inflammatory M1 and anti-inflammatory/protumoral M2 subtypes. Tumor cells can induce M2 polarization of tumor-associated macrophages (TAMs) to promote metastasis; but the underlying pathways require to be elucidated. In this study, we detected a positive association between MFHAS1 expression in TAMs and human colorectal cancer (CRC) TNM stage...
October 21, 2016: Oncotarget
Simon Schimmack, Sarah Kneller, Nigora Dadabaeva, Frank Bergmann, Andrew Taylor, Thilo Hackert, Jens Werner, Oliver Strobel
BACKGROUND: The Hedgehog (HH) pathway is a mediator in pancreatic ductal adenocarcinoma (PDAC). Surprisingly, previous studies suggested that primary cilia (PC), the essential organelles for HH signal transduction, were lost in PDAC. The aim of this study was to determine the presence of PC in human normal pancreas, chronic pancreatitis, and during carcinogenesis to PDAC with focus on both epithelia and stroma. METHODS: PC were analyzed in paraffin sections from normal pancreas, chronic pancreatitis, intraductal papillary-mucinous neoplasia, and PDAC, as well as in primary human pancreatic stellate cells (PSC) and pancreatic cancer cell lines by double immunofluorescence staining for acetylated α-tubuline and γ-tubuline...
2016: PloS One
Huib H Rabouw, Martijn A Langereis, Robert C M Knaap, Tim J Dalebout, Javier Canton, Isabel Sola, Luis Enjuanes, Peter J Bredenbeek, Marjolein Kikkert, Raoul J de Groot, Frank J M van Kuppeveld
Middle East respiratory syndrome coronavirus (MERS-CoV) causes severe respiratory infections that can be life-threatening. To establish an infection and spread, MERS-CoV, like most other viruses, must navigate through an intricate network of antiviral host responses. Besides the well-known type I interferon (IFN-α/β) response, the protein kinase R (PKR)-mediated stress response is being recognized as an important innate response pathway. Upon detecting viral dsRNA, PKR phosphorylates eIF2α, leading to the inhibition of cellular and viral translation and the formation of stress granules (SGs), which are increasingly recognized as platforms for antiviral signaling pathways...
October 2016: PLoS Pathogens
Alexandra Sufit, Alisa B Lee-Sherick, Deborah DeRyckere, Manali Rupji, Bhakti Dwivedi, Marileila Varella-Garcia, Angela M Pierce, Jeanne Kowalski, Xiaodong Wang, Stephen V Frye, H Shelton Earp, Amy K Keating, Douglas K Graham
BACKGROUND: MER receptor tyrosine kinase (MERTK) is expressed in a variety of malignancies, including glioblastoma multiforme (GBM). Our previous work demonstrated that inhibition of MERTK using RNA interference induced cell death and chemosensitivity in GBM cells, implicating MERTK as a potential therapeutic target. Here we investigate whether a novel MERTK-selective small molecule tyrosine kinase inhibitor, UNC2025, has similar anti-tumor effects in GBM cell lines. METHODS: Correlations between expression of GAS6, a MERTK ligand, and prognosis were determined using data from the TCGA database...
2016: PloS One
Binh Thanh Nguyen, Min Park, Jae-Chul Pyun, Young Sook Yoo, Min-Jung Kang
An assay for protein kinase C delta (PKCδ) activity based on the quantification of a synthetic substrate using capillary electrophoresis with laser-induced fluorescence detection was developed. The peptides labeled with fluorescein isothiocyanate F-ERK (where ERK is extracellular signal-regulated kinase) and the phosphorylated form, P-F-ERK, were utilized for the method development and validation. The migration time of F-ERK and P-F-ERK were 6.3 ± 0.1 and 8.7 ± 0.2 min, respectively. LOD and LOQ values of F-ERK were 2 and 6 ng/mL and those of P-F-ERK were 4 and 12 ng/mL...
October 26, 2016: Electrophoresis
Si Cheng, Jie Sun, Junxing Yang, Jianqiang Lv, Feng Wu, Yanxing Lin, Lishan Liao, Yiyou Ye, Chenfu Cao, Liurong Fang, Qunyi Hua
A fast and ultrasensitive test-strip system combining quantum dots (QDs) with a lateral-flow immunoassay strip (LFIAS) was established for detection of Peste des petits ruminants virus (PPRV) antibody. The highly luminescent water-soluble carboxyl-functionalized QDs were used as the signal output and were conjugated to streptococcal protein G (SPG), which was capable of binding to immunoglobulin G (IgG) from many species through an amide bond to capture the target PPRV IgGs. The PPRV N protein, which was immobilized on the detection zone of the test strip, was expressed by transfecting recombinant Bacmid-PPRV-N with Lipofect into Sf9 insect cells...
October 25, 2016: Analytical and Bioanalytical Chemistry
Yichun Zhang, Tielin Shi, Lei Su, Xiao Wang, Yuan Hong, Kepeng Chen, Guanglan Liao
Acoustic micro imaging has been proven to be sufficiently sensitive for micro defect detection. In this study, we propose a sparse reconstruction method for acoustic micro imaging. A finite element model with a micro defect is developed to emulate the physical scanning. Then we obtain the point spread function, a blur kernel for sparse reconstruction. We reconstruct deblurred images from the oversampled C-scan images based on l₁-norm regularization, which can enhance the signal-to-noise ratio and improve the accuracy of micro defect detection...
October 24, 2016: Sensors
Mingshun Jiang, Yaozhang Sai, Xiangyi Geng, Qingmei Sui, Xiaohui Liu, Lei Jia
We proposed and studied an impact detection system based on a fiber Bragg grating (FBG) sensor array and multiple signal classification (MUSIC) algorithm to determine the location and the number of low velocity impacts on a carbon fiber-reinforced polymer (CFRP) plate. A FBG linear array, consisting of seven FBG sensors, was used for detecting the ultrasonic signals from impacts. The edge-filter method was employed for signal demodulation. Shannon wavelet transform was used to extract narrow band signals from the impacts...
October 24, 2016: Sensors
Hyong Woo Choi, Daniel F Klessig
BACKGROUND: Multicellular organisms have evolved systems/mechanisms to detect various forms of danger, including attack by microbial pathogens and a variety of pests, as well as tissue and cellular damage. Detection via cell-surface receptors activates an ancient and evolutionarily conserved innate immune system. RESULT: Potentially harmful microorganisms are recognized by the presence of molecules or parts of molecules that have structures or chemical patterns unique to microbes and thus are perceived as non-self/foreign...
October 26, 2016: BMC Plant Biology
Joubin Nasehi Tehrani, Alistair McEwan, Jing Wang
PURPOSE: The authors have developed and evaluated a method to predict lung surface motion based on spirometry measurements, and chest and abdomen motion at selected locations. METHODS: A patient-specific 3D triangular surface mesh of the lung region was obtained at the end expiratory phase by the threshold-based segmentation method. Lung flow volume changes were recorded with a spirometer for each patient. A total of 192 selected points at a regular spacing of 2 × 2 cm matrix points were used to detect chest wall motion over a total area of 32 × 24 cm covering the chest and abdomen surfaces...
October 2016: Medical Physics
Lynda C Ikejimba, Stephen J Glick, Kingshuk Roy Choudhury, Ehsan Samei, Joseph Y Lo
PURPOSE: The purpose of this study is to quantify the differences in detectability between full field digital mammography (FFDM), digital breast tomosynthesis (DBT), and synthetic mammography (SM) for challenging, low contrast signals, in the context of both a uniform and an anthropomorphic, textured phantom. METHODS: Images of the phantoms were acquired using a Hologic Selenia Dimensions system. Images were taken at 50%, 100%, and 200% of the dose delivered under automatic exposure control (AEC)...
October 2016: Medical Physics
Hiroyuki Katsuki, Kenji Ohmori
We have experimentally performed the coherent control of delocalized ro-vibrational wave packets (RVWs) of solid para-hydrogen (p-H2) by the wave packet interferometry (WPI) combined with coherent anti-Stokes Raman scattering (CARS). RVWs of solid p-H2 are delocalized in the crystal, and the wave function with wave vector k ∼ 0 is selectively excited via the stimulated Raman process. We have excited the RVW twice by a pair of femtosecond laser pulses with delay controlled by a stabilized Michelson interferometer...
September 28, 2016: Journal of Chemical Physics
Swarupananda Pradhan
The three axis vector magnetic field measurement based on the interaction of a single elliptically polarized light beam with an atomic system is described. The magnetic field direction dependent atomic responses are extracted by the polarimetric detection in combination with laser frequency modulation and magnetic field modulation techniques. The magnetometer geometry offers additional critical requirements like compact size and large dynamic range for space application. Further, the three axis magnetic field is measured using only the reflected signal (one polarization component) from the polarimeter and thus can be easily expanded to make spatial array of detectors and/or high sensitivity field gradient measurement as required for biomedical application...
September 2016: Review of Scientific Instruments
Zhao-Hui Zhai, Sen-Cheng Zhong, Jun Li, Li-Guo Zhu, Kun Meng, Jiang Li, Qiao Liu, Qi-Xian Peng, Ze-Ren Li, Jian-Heng Zhao
Pulsed terahertz spectroscopy is suitable for spectroscopic diagnostics of ultrafast events. However, the study of irreversible or single shot ultrafast events requires ability to record transient properties at multiple time delays, i.e., time resolved at single shot level, which is not available currently. Here by angular multiplexing use of femtosecond laser pulses, we developed and demonstrated a time resolved, transient terahertz time domain spectroscopy technique, where burst mode THz pulses were generated and then detected in a single shot measurement manner...
September 2016: Review of Scientific Instruments
S Cronenberger, D Scalbert
Spin noise spectroscopy is a powerful technique for studying spin relaxation in semiconductors. In this article, we propose an extension of this technique based on optical heterodyne detection of spin noise, which provides several key advantages compared to conventional spin noise spectroscopy: detection of high frequency spin noise not limited by detector bandwidth or sampling rates of digitizers, quantum limited sensitivity even in case of very weak probe power, and possible amplification of the spin noise signal...
September 2016: Review of Scientific Instruments
Yoshio Okada, Matti Hämäläinen, Kevin Pratt, Anthony Mascarenas, Paul Miller, Menglai Han, Jose Robles, Anders Cavallini, Bill Power, Kosal Sieng, Limin Sun, Seok Lew, Chiran Doshi, Banu Ahtam, Christoph Dinh, Lorenz Esch, Ellen Grant, Aapo Nummenmaa, Douglas Paulson
We developed a 375-channel, whole-head magnetoencephalography (MEG) system ("BabyMEG") for studying the electrophysiological development of human brain during the first years of life. The helmet accommodates heads up to 95% of 36-month old boys in the USA. The unique two-layer sensor array consists of: (1) 270 magnetometers (10 mm diameter, ∼15 mm coil-to-coil spacing) in the inner layer, (2) thirty-five three-axis magnetometers (20 mm × 20 mm) in the outer layer 4 cm away from the inner layer. Additionally, there are three three-axis reference magnetometers...
September 2016: Review of Scientific Instruments
Paul Oxley, Joseph Wihbey
We provide experimental and theoretical details of a simple technique to determine absolute line-of-sight integrated atomic beam densities based on resonant laser absorption. In our experiments, a thermal lithium beam is chopped on and off while the frequency of a laser crossing the beam at right angles is scanned slowly across the resonance transition. A lock-in amplifier detects the laser absorption signal at the chop frequency from which the atomic density is determined. The accuracy of our experimental method is confirmed using the related technique of wavelength modulation spectroscopy...
September 2016: Review of Scientific Instruments
Joel D Leger, Clyde Varner, Igor V Rubtsov
Fifth-order multidimensional infrared spectroscopy with heterodyned detection was carried out in the three-beam dual-frequency configuration. Numerous 5th-order cross peaks were detected for the 4-azidobutyrate-N-hydroxysuccinimide ester compound in solution involving several vibrational modes ranging in frequency from 1045 to 2100 cm(-1). Cross peaks involving overtones (2X/Z) and combination bands (XY/Z) among the tags, modes X and Y excited by the first two mid-IR laser pulses, and the reporter, modes Z excited by the third laser pulse, were acquired and the factors affecting the amplitude of 5th-order cross peaks are discussed...
October 21, 2016: Journal of Chemical Physics
Clara Leigh Feider, Natalia Elizondo, Livia S Eberlin
Ambient ionization mass spectrometry imaging (MSI) has been increasingly used to investigate the molecular distribution of biological tissue samples. Here, we report the integration and optimization of desorption electrospray ionization (DESI) and liquid-microjunction surface sampling probe (LMJ-SSP), and a chip-based high-field asymmetric waveform ion mobility spectrometry (FAIMS) device to image metabolites, lipids, and proteins in biological tissue samples. Optimized FAIMS parameters for specific molecular classes enabled semi-targeted detection of multiply-charged molecular species at enhanced signal-to-noise ratios (S/N), improved visualization of spatial distributions, and most importantly, allowed detection of species which were otherwise unseen by ambient ionization MSI alone...
October 26, 2016: Analytical Chemistry
Thi Mai Huong Tran, Adriano Ambrosi, Martin Pumera
Graphene oxide (GO) can be conveniently used as a starting material for the preparation of selective and sensitive electrochemical sensing systems. The amount of oxygen groups present on the material can be precisely tuned by reduction methodologies which allow the selection of the optimal C/O ratio for specific analytes. An electrochemical reduction procedure is used in this work to alter the oxygen content of the GO starting material and investigate the effects on the electrochemical detection of phenolic compounds selected with different hydroxyl groups: phenol, catechol, hydroquinone and phloroglucinol...
October 26, 2016: Physical Chemistry Chemical Physics: PCCP
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