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https://www.readbyqxmd.com/read/28737475/ascaris-ancient-dna-sequences-of-cytochrome-b-cytochrome-c-oxidase-subunit-1-nadh-dehydrogenase-subunit-1-and-internal-transcribed-spacer-1-genes-from-joseon-mummy-feces-of-korea
#1
Jong Ha Hong, Chang Seok Oh, Min Seo, Jong Yil Chai, Dong Hoon Shin
We analyzed Ascaris ancient DNA (aDNA) of cytochrome b (cyt b), cytochrome c oxidase subunit 1 (COX1), NADH dehydrogenase subunit 1 (NAD1) and internal transcribed spacer 1 (ITS1) genes extracted from the feces or precipitates of 15th to 18th century Korean mummies. After multiple Ascaris genes in ancient samples were successfully amplified by PCR, consensus sequences could be determined by the alignment of the sequences of cloned PCR products. The obtained sequences of each gene were highly similar to those of Ascaris spp...
July 24, 2017: Journal of Parasitology
https://www.readbyqxmd.com/read/28736794/tinea-capitis-by-microsporum-audouinii-case-reports-and-review-of-published-global-literature-2000-2016
#2
Fábio Brito-Santos, Maria Helena Galdino Figueiredo-Carvalho, Rowena Alves Coelho, Anna Sales, Rodrigo Almeida-Paes
Tinea capitis caused by Microsporum audouinii is reported herein from two Brazilian schoolchildren, which are brothers. Arthroconidia were evidenced on direct examination of scalp hair, and a fungus of the genus Microsporum was isolated from cultures of each patient. The isolated fungi were classified as M. audouinii by visualization of species-specific structures, including: pectinate hyphae, chlamydospores, and fusiform macroconidia, sterile growth with characteristic brown pigment in rice grains, and through DNA sequencing of the internal transcriber spacer region...
July 24, 2017: Mycopathologia
https://www.readbyqxmd.com/read/28735325/characterization-of-endolithic-culturable-microbial-communities-in-carbonate-rocks-from-a-typical-karst-canyon-in-guizhou-china
#3
Yuan Tang, Jian-Zhong Cheng, Bin Lian
The endolithic environment is a ubiquitous habitat for microorganisms and a critical interface between biology and geology. In this study, a culture-based method and the phylogenetic analysis based on 16S rRNA and internal transcribed spacer (ITS) sequences were used to investigate the diversity of endolithic bacteria and fungi in two main types of carbonate rocks (namely dolomite and limestone) from Nanjiang Canyon in Guizhou karst area, China. The results of bacterial diversity indicated that all bacteria isolated from dolomite and limestone rocks were divided into 4 bacterial groups, including Proteobacteria, Actinobacteria, Firmicutes and Bacteroidetes...
January 2, 2017: Polish Journal of Microbiology
https://www.readbyqxmd.com/read/28720153/molecular-characterization-of-moniezia-sichuanensis-in-captive-musk-deer-moschus-berezovskii
#4
J Xu, H Lin, J Chen, Y Cai, W Fu, H Wang, X Gu, W Lai, X Peng, G Yang
The musk deer (Moschus berezovskii) is an economically important species from which musk is extracted and used in perfumes and medicines. Cestodes (parasitic flatworms) of the genus Moniezia are important parasites that infect this endangered species and can cause high mortality in young deer. In 1982, Moniezia (S.) sichuanensis sp. nov. was described from a specimen obtained from wild musk deer. The new species was distinct from the other described species of Moniezia by the sawtooth-shaped interproglottidal glands, the thick vagina and the absence of a cirrus spine...
July 19, 2017: Journal of Helminthology
https://www.readbyqxmd.com/read/28719963/prevalence-of-hymenolepis-nana-and-h-diminuta-from-brown-rats-rattus-norvegicus-in-heilongjiang-province-china
#5
Di Yang, Wei Zhao, Yichi Zhang, Aiqin Liu
Hymenolepis nana and Hymenolepis diminuta are globally widespread zoonotic cestodes. Rodents are the main reservoir host of these cestodes. Brown rats (Rattus norvegicus) are the best known and most common rats, and usually live wherever humans live, especially in less than desirable hygiene conditions. Due to the little information of the 2 hymenolepidid species in brown rats in China, the aim of this study was to understand the prevalence and genetic characterization of H. nana and H. diminuta in brown rats in Heilongjiang Province, China...
June 2017: Korean Journal of Parasitology
https://www.readbyqxmd.com/read/28719959/pcr-identification-and-phylogenetic-analysis-of-trichomonas-gallinae-from-domestic-pigeons-in-guangzhou-china
#6
Shen-Ben Qiu, Meng-Na Lv, Xi He, Ya-Biao Weng, Shang-Shu Zou, Xin-Qiu Wang, Rui-Qing Lin
Avian trichomoniasis caused by Trichomonas gallinae is a serious protozoan disease worldwide. The domestic pigeon (Columba livia domestica) is the main host for T. gallinae and plays an important role in the spread of the disease. Based on the internal transcribed spacers of nuclear ribosomal DNA of this parasite, a pair of primers (TgF2/TgR2) was designed and used to develop a PCR assay for the diagnosis of T. gallinae infection in domestic pigeons. This approach allowed the identification of T. gallinae, and no amplicons were produced when using DNA from other common avian pathogens...
June 2017: Korean Journal of Parasitology
https://www.readbyqxmd.com/read/28719667/assessing-intragenomic-variation-of-the-internal-transcribed-spacer-two-adapting-the-illumina-metagenomics-protocol
#7
Lo'ai Alanagreh, Caitlin Pegg, Amritha Harikumar, Mark Buchheim
Primary and secondary structural data from the internal transcribed spacer two (ITS2) have been used extensively for diversity studies of many different eukaryotic organisms, including the green algae. Ease of amplification is due, at least in part, to the fact that ITS2 is part of the tandemly-repeated rRNA array. The potential confounding influence of intragenomic variability has yet to be addressed except in a few organisms. Moreover, few of the assessments of intragenomic variation have taken advantage of the deep sequencing capacity of sequence-by-synthesis protocols...
2017: PloS One
https://www.readbyqxmd.com/read/28719307/first-report-on-natural-infection-of-phlebotomus-sergenti-with-leishmania-tropica-in-a-classical-focus-of-leishmania-major-in-tunisia
#8
Kaouther Jaouadi, Jihene Bettaieb, Amira Bennour, Sadok Salem, Mohamed Ridha Rjeibi, Sana Chaabane, Rihab Yazidi, Neila Khabouchi, Adel Gharbi, Afif Ben Salah
In Tunisia, chronic cutaneous leishmaniasis due to Leishmania tropica is an important health problem. Its spreading has not been fully elucidated. Information on sandfly vectors, as well as their associated Leishmania species, is of paramount importance since vector dispersion is one of the major factors responsible for pathogen dissemination. Ninety-seven unfed females belonging to the genera Sergentomyia and Phlebotomus were collected between June and August 2015 using sticky paper traps. Polymerase chain reaction-restriction fragment length polymorphism analysis of the internal transcribed spacer 1and sequencing were used for Leishmania detection and identification...
July 2017: American Journal of Tropical Medicine and Hygiene
https://www.readbyqxmd.com/read/28716483/clinically-relevant-fungi-in-water-and-on-surfaces-in-an-indoor-swimming-pool-facility
#9
Yuli Ekowati, Anne D van Diepeningen, Giuliana Ferrero, Maria D Kennedy, Ana Maria de Roda Husman, Franciska M Schets
The density of fungal contamination and the fungal diversity in an indoor swimming pool facility were assessed. A total of 16 surface samples and 6 water samples were analysed by using a combination of different (semi-) selective culture media. Isolated fungal colonies were identified to the genus or species level by sequencing of the internal transcribed spacer (ITS). The highest fungal counts in water and on surfaces were in the recreational pool (17CFU/100mL) and on a flexibeam (5.8CFU/cm(2)), respectively as compared with low counts (<0...
July 10, 2017: International Journal of Hygiene and Environmental Health
https://www.readbyqxmd.com/read/28716154/new-insights-from-gorongosa-national-park-and-niassa-national-reserve-of-mozambique-increasing-the-genetic-diversity-of-trypanosoma-vivax-and-trypanosoma-vivax-like-in-tsetse-flies-wild-ungulates-and-livestock-from-east-africa
#10
Carla Mf Rodrigues, Herakles A Garcia, Adriana C Rodrigues, André G Costa-Martins, Carlos L Pereira, Dagmar L Pereira, Zakaria Bengaly, Luis Neves, Erney P Camargo, Patrick B Hamilton, Marta Mg Teixeira
BACKGROUND: Trypanosoma (Duttonella) vivax is a major pathogen of livestock in Africa and South America (SA), and genetic studies limited to small sampling suggest greater diversity in East Africa (EA) compared to both West Africa (WA) and SA. METHODS: Multidimensional scaling and phylogenetic analyses of 112 sequences of the glycosomal glyceraldehyde phosphate dehydrogenase (gGAPDH) gene and 263 sequences of the internal transcribed spacer of rDNA (ITS rDNA) were performed to compare trypanosomes from tsetse flies from Gorongosa National Park and Niassa National Reserve of Mozambique (MZ), wild ungulates and livestock from EA, and livestock isolates from WA and SA...
July 17, 2017: Parasites & Vectors
https://www.readbyqxmd.com/read/28713409/phylogenetic-resolution-in-juglans-based-on-complete-chloroplast-genomes-and-nuclear-dna-sequences
#11
Wenpan Dong, Chao Xu, Wenqing Li, Xiaoman Xie, Yizeng Lu, Yanlei Liu, Xiaobai Jin, Zhili Suo
Walnuts (Juglans of the Juglandaceae) are well-known economically important resource plants for the edible nuts, high-quality wood, and medicinal use, with a distribution from tropical to temperate zones and from Asia to Europe and Americas. There are about 21 species in Juglans. Classification of Juglans at section level is problematic, because the phylogenetic position of Juglans cinerea is disputable. Lacking morphological and DNA markers severely inhibited the development of related researches. In this study, the complete chloroplast genomes and two nuclear DNA regions (the internal transcribed spacer and ubiquitin ligase gene) of 10 representative taxa of Juglans were used for comparative genomic analyses in order to deepen the understanding on the application value of genetic information for inferring the phylogenetic relationship of the genus...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28706317/deladenus-posteroporus-n-sp-nematoda-neotylenchidae-isolated-from-packaging-wood-from-canada-and-white-pine-pinus-monticola-lumber-from-the-united-states-and-intercepted-in-ningbo-china
#12
Qing Yu, Jianfeng Gu, Weimin Ye, Rusong Li, Jie He
Deladenus posteroporus n. sp. isolated from packaging wood originated from Canada and from white pine lumber from the United States, both intercepted in the port of Ningbo, China, is described and illustrated. Both mycetophagous and infective forms were recovered from the Canadian sample, whereas only the mycetophagous form was found in the U.S. SAMPLE: The new species is characterized by the posteriorly positioned excretory pore relative to the hemizonid in both mycetophagous and infective forms, by a broadly rounded tail end in mycetophagous females and lateral fields with 11 to 12 lines midbody in both mycetophagous females and males...
June 2017: Journal of Nematology
https://www.readbyqxmd.com/read/28704511/genetic-variation-analysis-and-relationships-among-environmental-strains-of-scedosporium-apiospermum-sensu-stricto-in-bangkok-thailand
#13
Thanwa Wongsuk, Potjaman Pumeesat, Natthanej Luplertlop
The Scedosporium apiospermum species complex is an emerging filamentous fungi that has been isolated from environment. It can cause a wide range of infections in both immunocompetent and immunocompromised individuals. We aimed to study the genetic variation and relationships between 48 strains of S. apiospermum sensu stricto isolated from soil in Bangkok, Thailand. For PCR, sequencing and phylogenetic analysis, we used the following genes: actin; calmodulin exons 3 and 4; the second largest subunit of the RNA polymerase II; ß-tubulin exon 2-4; manganese superoxide dismutase; internal transcribed spacer; transcription elongation factor 1α; and beta-tubulin exons 5 and 6...
2017: PloS One
https://www.readbyqxmd.com/read/28701875/converting-panax-ginseng-dna-and-chemical-fingerprints-into-two-dimensional-barcode
#14
Yong Cai, Peng Li, Xi-Wen Li, Jing Zhao, Hai Chen, Qing Yang, Hao Hu
BACKGROUND: In this study, we investigated how to convert the Panax ginseng DNA sequence code and chemical fingerprints into a two-dimensional code. In order to improve the compression efficiency, GATC2Bytes and digital merger compression algorithms are proposed. METHODS: HPLC chemical fingerprint data of 10 groups of P. ginseng from Northeast China and the internal transcribed spacer 2 (ITS2) sequence code as the DNA sequence code were ready for conversion. In order to convert such data into a two-dimensional code, the following six steps were performed: First, the chemical fingerprint characteristic data sets were obtained through the inflection filtering algorithm...
July 2017: Journal of Ginseng Research
https://www.readbyqxmd.com/read/28701623/molecular-characterization-of-the-ribosomal-dna-unit-of-sarcocystis-singaporensis-sarcocystis-zamani-and-sarcocystis-zuoi-from-rodents-in-thailand
#15
Vichan Watthanakaiwan, Manakorn Sukmak, Kriengsak Hamarit, Nongnid Kaolim, Worawidh Wajjwalku, Yuttamol Muangkram
Sarcocystis species are heteroxenous cyst-forming coccidian protozoan parasites with a wide host range, including rodents. In this study, Sarcocystis spp. samples were isolated from Bandicota indica, Rattus argentiventer, R. tiomanicus and R. norvegicus across five provinces of Thailand. Two major groups of Sarcocystis cysts were determined in this study: large and small cysts. Sequence comparisons and phylogenetic analyses based on the partial sequences of 28S ribosomal DNA, the large cysts showed that the highest identity value (99%) with the S...
July 13, 2017: Journal of Veterinary Medical Science
https://www.readbyqxmd.com/read/28701186/the-oral-fungal-mycobiome-characteristics-and-relation-to-periodontitis-in-a-pilot-study
#16
Brandilyn A Peters, Jing Wu, Richard B Hayes, Jiyoung Ahn
BACKGROUND: The oral fungal microbiome (mycobiome) is not well characterized, particularly in relation to oral diseases such as periodontal disease. We aimed to describe and compare the oral mycobiome of subjects with and without periodontal disease. RESULTS: We characterized the oral mycobiome in 30 adult subjects (15 with periodontal disease, 15 with good oral health) by sequencing the taxonomically informative pan-fungal internal transcribed spacer (ITS) gene in DNA extracted from oral wash samples...
July 12, 2017: BMC Microbiology
https://www.readbyqxmd.com/read/28701020/the-identification-of-araliaceae-species-by-its2-genetic-barcoding-and-pollen-morphology
#17
Arkadiy Reunov, Galina Reunova, Dmitry Atopkin, Yulia Reunova, Tamara Muzarok, Evgeny Zakharov, Yury Zhuravlev
The genetic barcode ITS2 (ITS: internal transcribed spacer) and pollen morphology were used for the identification of the pharmacologically valuable wild Araliaceae species Panax ginseng, Oplopanax elatus, Aralia elata, Aralia continentalis, Eleutherococcus senticosus, and Eleutherococcus sessiliflorus inhabiting the natural forests of Primorye, Russia. The ITS2 locus successfully identified all six species, which supports the use of ITS2 as a standard barcode for medicinal plants. However, the ITS2 locus was insufficient for intra-specific discrimination in these species, neither within Primorye nor from other world representatives within GenBank...
July 12, 2017: Planta Medica
https://www.readbyqxmd.com/read/28697818/speciation-in-the-genus-cloacina-nematoda-strongylida-species-flocks-and-intra-host-speciation
#18
N B Chilton, M A Shuttleworth, F Huby-Chilton, A V Koehler, A Jabbar, R B Gasser, I Beveridge
Sequences of the first and second internal transcribed spacers (ITS1 + ITS2) of nuclear ribosomal DNA were employed to determine whether the congeneric assemblages of species of the strongyloid nematode genus Cloacina, found in the forestomachs of individual species of kangaroos and wallabies (Marsupialia: Macropodidae), considered to represent species flocks, were monophyletic. Nematode assemblages examined in the black-striped wallaby, Macropus (Notamacropus) dorsalis, the wallaroos, Macropus (Osphranter) antilopinus/robustus, rock wallabies, Petrogale spp...
July 12, 2017: Parasitology
https://www.readbyqxmd.com/read/28693587/human-presence-impacts-fungal-diversity-of-inflated-lunar-mars-analog-habitat
#19
A Blachowicz, T Mayer, M Bashir, T R Pieber, P De León, K Venkateswaran
BACKGROUND: An inflatable lunar/Mars analog habitat (ILMAH), simulated closed system isolated by HEPA filtration, mimics International Space Station (ISS) conditions and future human habitation on other planets except for the exchange of air between outdoor and indoor environments. The ILMAH was primarily commissioned to measure physiological, psychological, and immunological characteristics of human inhabiting in isolation, but it was also available for other studies such as examining its microbiological aspects...
July 11, 2017: Microbiome
https://www.readbyqxmd.com/read/28692668/a-novel-species-specific-real-time-pcr-assay-for-the-detection-of-the-emerging-zoonotic-parasite-ancylostoma-ceylanicum-in-human-stool
#20
Marina Papaiakovou, Nils Pilotte, Jessica R Grant, Rebecca J Traub, Stacey Llewellyn, James S McCarthy, Alejandro J Krolewiecki, Rubén Cimino, Rojelio Mejia, Steven A Williams
BACKGROUND: Molecular-based surveys have indicated that Ancylostoma ceylanicum, a zoonotic hookworm, is likely the second most prevalent hookworm species infecting humans in Asia. Most current PCR-based diagnostic options for the detection of Ancylostoma species target the Internal Transcribed Spacer (ITS) regions of the ribosomal gene cluster. These regions possess a considerable degree of conservation among the species of this genus and this conservation can lead to the misidentification of infecting species or require additional labor for accurate species-level determination...
July 2017: PLoS Neglected Tropical Diseases
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