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https://www.readbyqxmd.com/read/28432098/inhibitory-effect-of-coumarin-on-syntrophic-fatty-acid-oxidizing-and-methanogenic-cultures-and-biogas-reactor-microbiomes
#1
Denny Popp, Caroline M Plugge, Sabine Kleinsteuber, Hauke Harms, Heike Sträuber
Coumarins are widely found in plants as natural constituents having antimicrobial activity. When considering plants rich in coumarins for biogas production, adverse effects on microorganisms driving the anaerobic digestion process are expected. Furthermore, coumarin derivatives like warfarin, which are used as anti-coagulating medicine, are found in wastewater affecting its treatment. Coumarin as the structure common to all coumarins inhibits the anaerobic digestion process. However, details of this inhibition are still elusive...
April 21, 2017: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/28431762/effects-of-a-common-insecticide-on-wetland-communities-with-varying-quality-of-leaf-litter-inputs
#2
A B Stoler, B M Mattes, W D Hintz, D K Jones, L Lind, M S Schuler, R A Relyea
Chemical contamination of aquatic systems often co-occurs with dramatic changes in surrounding terrestrial vegetation. Plant leaf litter serves as a crucial resource input to many freshwater systems, and changes in litter species composition can alter the attributes of freshwater communities. However, little is known how variation in litter inputs interacts with chemical contaminants. We investigated the ecological effects resulting from changes in tree leaf litter inputs to freshwater communities, and how those changes might interact with the timing of insecticide contamination...
April 18, 2017: Environmental Pollution
https://www.readbyqxmd.com/read/28431521/a-reference-floral-transcriptome-of-sexual-and-apomictic-paspalum-notatum
#3
Juan Pablo A Ortiz, Santiago Revale, Lorena A Siena, Maricel Podio, Luciana Delgado, Juliana Stein, Olivier Leblanc, Silvina C Pessino
BACKGROUND: Paspalum notatum Flügge is a subtropical grass native to South America, which includes sexual diploid and apomictic polyploid biotypes. In the past decade, a number of apomixis-associated genes were discovered in this species through genetic mapping and differential expression surveys. However, the scarce information on Paspalum sequences available in public databanks limited annotations and functional predictions for these candidates. RESULTS: We used a long-read 454/Roche FLX+ sequencing strategy to produce robust reference transcriptome datasets from florets of sexual and apomictic Paspalum notatum genotypes and delivered a list of transcripts showing differential representation in both reproductive types...
April 21, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28431358/molecular-ecological-perspective-of-methanogenic-archaeal-community-in-rice-agroecosystem
#4
REVIEW
Singh Alpana, P Vishwakarma, T K Adhya, K Inubushi, S K Dubey
Methane leads to global warming owing to its warming potential higher than carbon dioxide (CO2). Rice fields represent the major source of methane (CH4) emission as the recent estimates range from 34 to 112 Tg CH4 per year. Biogenic methane is produced by anaerobic methanogenic archaea. Advances in high-throughput sequencing technologies and isolation methodologies enabled investigators to decipher methanogens to be unexpectedly diverse in phylogeny and ecology. Exploring the link between biogeochemical methane cycling and methanogen community dynamics can, therefore, provide a more effective mechanistic understanding of CH4 emission from rice fields...
April 18, 2017: Science of the Total Environment
https://www.readbyqxmd.com/read/28431310/characterization-of-bacterial-communities-of-donkey-milk-by-high-throughput-sequencing
#5
Maria de Los Dolores Soto Del Rio, Alessandra Dalmasso, Tiziana Civera, Maria Teresa Bottero
The interest in donkey milk (DM) is growing because of its functional properties and nutritional value, especially for children with allergies and food intolerances. However, most of the available reports of DM microbiota are based on culture-dependent methods to investigate food safety issues and the presence of lactic acid bacteria (LAB). The aim of this study was to determine the composition of DM bacterial communities using a high-throughput sequencing (HTS) approach. Bulk milk samples from Italian donkey dairy farms from two consecutive years were analysed using the MiSeq Illumina platform...
March 30, 2017: International Journal of Food Microbiology
https://www.readbyqxmd.com/read/28430942/short-term-responses-and-resistance-of-soil-microbial-community-structure-to-elevated-co2-and-n-addition-in-grassland-mesocosms
#6
Marie Simonin, Naoise Nunan, Juliette M G Bloor, Valérie Pouteau, Audrey Niboyet
Nitrogen (N) addition is known to affect soil microbial communities, but the interactive effects of N addition with other drivers of global change remain unclear. The impacts of multiple global changes on the structure of microbial communities may be mediated by specific microbial groups with different life-history strategies. Here, we investigated the combined effects of elevated CO2 and N addition on soil microbial communities using PLFA profiling in a short-term grassland mesocosm experiment. We also examined the linkages between the relative abundance of r- and K-strategist microorganisms and resistance of the microbial community structure to experimental treatments...
April 18, 2017: FEMS Microbiology Letters
https://www.readbyqxmd.com/read/28430898/plant-water-stress-affects-interactions-between-an-invasive-and-a-naturalized-aphid-species-on-cereal-crops
#7
N E Foote, T S Davis, D W Crowder, N A Bosque-Pérez, S D Eigenbrode
In cereal cropping systems of the Pacific Northwestern United States (PNW), climate change is projected to increase the frequency of drought during summer months, which could increase water stress for crop plants. Yet, it remains uncertain how interactions between herbivore species are affected by drought stress. Here, interactions between two cereal aphids present in PNW cereal systems, Metopolophium festucae (Theobald) subsp. cerealium (a newly invasive species) and Rhopalosiphum padi L. (a naturalized species), were tested relative to wheat water stress...
April 18, 2017: Environmental Entomology
https://www.readbyqxmd.com/read/28430873/bioinformatics-in-germany-toward-a-national-level-infrastructure
#8
Andreas Tauch, Arwa Al-Dilaimi
The German Network for Bioinformatics Infrastructure (de.NBI) is a national initiative funded by the German Federal Ministry of Education and Research (BMBF). The mission of de.NBI is (i) to provide high-quality bioinformatics services to users in basic and applied life sciences research from academia, industry and biomedicine; (ii) to offer bioinformatics training to users in Germany and Europe through a wide range of workshops and courses; and (iii) to foster the cooperation of the German bioinformatics community with international network structures such as the European life-sciences Infrastructure for biological Information (ELIXIR)...
April 18, 2017: Briefings in Bioinformatics
https://www.readbyqxmd.com/read/28430188/interactions-between-soil-and-dead-wood-inhabiting-fungal-communities-during-the-decay-of-norway-spruce-logs
#9
Raisa Mäkipää, Tiina Rajala, Dmitry Schigel, Katja T Rinne, Taina Pennanen, Nerea Abrego, Otso Ovaskainen
We investigated the interaction between fungal communities of soil and dead wood substrates. For this, we applied molecular species identification and stable isotope tracking to both soil and decaying wood in an unmanaged boreal Norway spruce-dominated stand. Altogether, we recorded 1990 operational taxonomic units, out of which more than 600 were shared by both substrates and 589 were found to exclusively inhabit wood. On average the soil was more species-rich than the decaying wood, but the species richness in dead wood increased monotonically along the decay gradient, reaching the same species richness and community composition as soil in the late stages...
April 21, 2017: ISME Journal
https://www.readbyqxmd.com/read/28428865/competition-and-facilitation-structure-plant-communities-under-nurse-tree-canopies-in-extremely-stressful-environments
#10
Ali A Al-Namazi, Magdy I El-Bana, Stephen P Bonser
Nurse plant facilitation in stressful environments can produce an environment with relatively low stress under its canopy. These nurse plants may produce the conditions promoting intense competition between coexisting species under the canopy, and canopies may establish stress gradients, where stress increases toward the edge of the canopy. Competition and facilitation on these stress gradients may control species distributions in the communities under canopies. We tested the following predictions: (1) interactions between understory species shift from competition to facilitation in habitats experiencing increasing stress from the center to the edge of canopy of a nurse plant, and (2) species distributions in understory communities are controlled by competitive interactions at the center of canopy, and facilitation at the edge of the canopy...
April 2017: Ecology and Evolution
https://www.readbyqxmd.com/read/28427398/euphorbia-dracunculoides-l-abrogates-carbon-tetrachloride-induced-liver-and-dna-damage-in-rats
#11
Riffat Batool, Muhammad Rashid Khan, Muhammad Majid
BACKGROUND: Evaluation of Euphorbia dracunculoides of family Euphorbiaceae during previous studies had established the in vitro antioxidant and in vivo anti-inflammatory activities. The plant is used by the local communities of Pakistan for various disorders including rheumatism and edema. In this investigation we have evaluated the hepatoprotective effects against CCl4 induced toxicity in rat. METHODS: Dry powder of the aerial parts of E. dracunculoides was extracted with 95% methanol to get the extract (EDME)...
April 20, 2017: BMC Complementary and Alternative Medicine
https://www.readbyqxmd.com/read/28425494/individual-size-but-not-additional-nitrogen-regulates-tree-carbon-sequestration-in-a-subtropical-forest
#12
Jianping Wu, Honglang Duan, Wenfei Liu, Xiaohua Wei, Yingchun Liao, Houbao Fan
Recent studies have indicated that tree carbon accumulation in subtropical forests has been negatively affected by global change phenomena such as warming and drought. However, the long-term effect of nitrogen addition on plant carbon storage remains poorly understood in these regions. In this study, we conducted a 10-year field experiment examining the effect of experimental N addition on plant growth and carbon storage in a subtropical Chinese fir forest. The N levels were 0 (control), 60, 120, and 240 kg ha(-1) yr(-1), and the N effects on tree carbon were divided into stand and individual levels...
April 20, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28423459/breaks-in-modis-time-series-portend-vegetation-change-verification-using-long-term-data-in-an-arid-grassland-ecosystem
#13
Dawn M Browning, Jonathan J Maynard, Jason W Karl, Debra C Peters
Frequency and severity of extreme climatic events are forecast to increase in the 21st century. Predicting how managed ecosystems may respond to climatic extremes is intensified by uncertainty associated with knowing when, where, and how long effects of extreme events will be manifest in an ecosystem. In water-limited ecosystems with high inter-annual variability in rainfall, it is important to be able to distinguish responses that result from seasonal fluctuations in rainfall from long-term directional increases or decreases in precipitation...
April 19, 2017: Ecological Applications: a Publication of the Ecological Society of America
https://www.readbyqxmd.com/read/28423426/the-invasive-liriomyza-huidobrensis-diptera-agromyzidae-understanding-its-pest-status-and-management-globally
#14
Phyllis G Weintraub, Sonja J Scheffer, Diedrich Visser, Graciela Valladares, Alberto Soares Correa, B Merle Shepard, Aunu Rauf, Sean T Murphy, Norma Mujica, Charles MacVean, Jürgen Kroschel, Miriam Kishinevsky, Ravindra C Joshi, Nina S Johansen, Rebecca H Hallett, Hasan S Civelek, Bing Chen, Helga Blanco Metzler
Liriomyza huidobrensis (Blanchard) is native to South America but has expanded its range and invaded many regions of the world, primarily on flowers and to a lesser extent on horticultural product shipments. As a result of initial invasion into an area, damage caused is usually significant but not necessarily sustained. Currently, it is an economic pest in selected native and invaded regions of the world. Adults cause damage by puncturing abaxial and adaxial leaf surfaces for feeding and egg laying sites. Larvae mine the leaf parenchyma tissues which can lead to leaves drying and wilting...
January 1, 2017: Journal of Insect Science
https://www.readbyqxmd.com/read/28422054/growth-inhibition-of-sulfate-reducing-bacteria-in-produced-water-from-the-petroleum-industry-using-essential-oils
#15
Pamella Macedo de Souza, Fátima Regina de Vasconcelos Goulart, Joana Montezano Marques, Humberto Ribeiro Bizzo, Arie Fitzgerald Blank, Claudia Groposo, Maíra Paula de Sousa, Vanessa Vólaro, Celuta Sales Alviano, Daniela Sales Alviano Moreno, Lucy Seldin
Strategies for the control of sulfate-reducing bacteria (SRB) in the oil industry involve the use of high concentrations of biocides, but these may induce bacterial resistance and/or be harmful to public health and the environment. Essential oils (EO) produced by plants inhibit the growth of different microorganisms and are a possible alternative for controlling SRB. We aimed to characterize the bacterial community of produced water obtained from a Brazilian petroleum facility using molecular methods, as well as to evaluate the antimicrobial activity of EO from different plants and their major components against Desulfovibrio alaskensis NCIMB 13491 and against SRB growth directly in the produced water...
April 19, 2017: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://www.readbyqxmd.com/read/28421311/long-term-soil-alteration-in-historical-charcoal-hearths-affects-tuber-melanosporum-mycorrhizal-development-and-environmental-conditions-for-fruiting
#16
Sergi Garcia-Barreda, Sara Molina-Grau, Ricardo Forcadell, Sergio Sánchez, Santiago Reyna
Abandoned charcoal hearths constitute a very particular habitat for spontaneous fruiting of Tuber melanosporum, leading some harvesters to hypothesise that the fungus could benefit from the alterations that these soils underwent. However, ecological mechanisms involved in this relation are not fully elucidated yet. As a first step to understand it, the influence of long-term soil alteration on the symbiotic stage of T. melanosporum and on selected soil properties considered key to fruiting was assessed by conducting a greenhouse bioassay and a field observational study...
April 18, 2017: Mycorrhiza
https://www.readbyqxmd.com/read/28420790/honeybee-gut-microbiota-promotes-host-weight-gain-via-bacterial-metabolism-and-hormonal-signaling
#17
Hao Zheng, J Elijah Powell, Margaret I Steele, Carsten Dietrich, Nancy A Moran
Social bees harbor a simple and specialized microbiota that is spatially organized into different gut compartments. Recent results on the potential involvement of bee gut communities in pathogen protection and nutritional function have drawn attention to the impact of the microbiota on bee health. However, the contributions of gut microbiota to host physiology have yet to be investigated. Here we show that the gut microbiota promotes weight gain of both whole body and the gut in individual honey bees. This effect is likely mediated by changes in host vitellogenin, insulin signaling, and gustatory response...
April 18, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/28419748/the-known-genetic-potential-for-microbial-communities-to-degrade-organic-phosphorus-is-reduced-in-low-ph-soils
#18
Ian D E A Lidbury, Tandra Fraser, Andrew R J Murphy, David J Scanlan, Gary D Bending, Alexandra M E Jones, Jonathan D Moore, Andrew Goodall, Mark Tibbett, John P Hammond, Elizabeth M H Wellington
In soil, bioavailable inorganic orthophosphate is found at low concentrations and thus limits biological growth. To overcome this phosphorus scarcity, plants and bacteria secrete numerous enzymes, namely acid and alkaline phosphatases, which cleave orthophosphate from various organic phosphorus substrates. Using profile hidden Markov modeling approaches, we investigated the abundance of various non specific phosphatases, both acid and alkaline, in metagenomes retrieved from soils with contrasting pH regimes...
April 16, 2017: MicrobiologyOpen
https://www.readbyqxmd.com/read/28419433/plant-soil-feedbacks-in-declining-forests-implications-for-species-coexistence
#19
Lorena Gómez-Aparicio, Jara Domínguez-Begines, Paul Kardol, José M Ávila, Beatriz Ibáñez, Luis V García
Plant-soil feedbacks (PSFs) play a relevant role as drivers of species abundance, coexistence, and succession in plant communities. However, the potential contribution of PSFs to community dynamics in changing forest ecosystems affected by global change drivers is still largely unexplored. We measured the direction, strength and nature (biological vs. chemical) of PSFs experienced by coexisting tree species in two types of declining Quercus suber forests of southwestern Spain (open woodland vs. closed forest) invaded by the exotic soil pathogen Phytophthora cinnamomi...
April 18, 2017: Ecology
https://www.readbyqxmd.com/read/28419169/decomposing-functional-trait-associations-in-a-chinese-subtropical-forest
#20
Xuefei Li, Kequan Pei, Marc Kéry, Pascal A Niklaus, Bernhard Schmid
Functional traits, properties of organisms correlated with ecological performance, play a central role in plant community assembly and functioning. To some extents, functional traits vary in concert, reflecting fundamental ecological strategies. While "trait syndromes" characteristic of e.g. fast-growing, early-successional vs. competitive, late-successional species are recognized in principle, less is known about the environmental and genetic factors at the source of trait variation and covariation within plant communities...
2017: PloS One
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