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https://www.readbyqxmd.com/read/28938020/seasonal-variations-in-carbon-nitrogen-and-phosphorus-concentrations-and-c-n-p-stoichiometry-in-different-organs-of-a-larix-principis-rupprechtii-mayr-plantation-in-the-qinling-mountains-china
#1
Hailiang Li, M James C Crabbe, Fuli Xu, Weiling Wang, Lihui Ma, Ruilong Niu, Xing Gao, Xingxing Li, Pei Zhang, Xin Ma, Haikui Chen
Understanding how concentrations of elements and their stoichiometry change with plant growth and age is critical for predicting plant community responses to environmental change. We used long-term field experiments to explore how the leaf, stem and root carbon (C), nitrogen (N) and phosphorous (P) concentrations and their stoichiometry changed with growth and stand age in a L. principis-rupprechtii Mayr. plantation from 2012-2015 in the Qinling Mountains, China. Our results showed that the C, N and P concentrations and stoichiometric ratios in different tissues of larch stands were affected by stand age, organ type and sampling month and displayed multiple correlations with increased stand age in different growing seasons...
2017: PloS One
https://www.readbyqxmd.com/read/28936837/-influence-of-tobacco-chuanminshen-violaceum-rotation-on-microbe-community-in-soil
#2
Dong-Yan Zhang, Jian Zhao, Shui-Ping Yang, Jing-Jing Mo, Da-Min He, Jun Wang, Jian-Yu Gou, Xue Zhang, Wei Jiang, Ming-Xia Wen
Soil microbes are the important indicator of soil quality. For exploring Chuanminshen violaceum planting to microbial effects in tobacco soil, this paper adopted Illumina MiSeq high-throughput sequencing to research the change of bacteria and fungi at the phylum and genus in the soil. The results showed that the Ch. violaceum planting increased the biodiversity of bacteria and fungi. The influence on fungi was greater than that on bacteria. It greatly increased the sequence of fungi, it obtained 32 978 16S rDNA and 32 229 18S rDNA sequence number...
December 2016: Zhongguo Zhong Yao za Zhi, Zhongguo Zhongyao Zazhi, China Journal of Chinese Materia Medica
https://www.readbyqxmd.com/read/28936234/the-effects-of-co2-and-h2-on-co-metabolism-by-pure-and-mixed-microbial-cultures
#3
Sofia Esquivel-Elizondo, Anca G Delgado, Bruce E Rittmann, Rosa Krajmalnik-Brown
BACKGROUND: Syngas fermentation, the bioconversion of CO, CO2, and H2 to biofuels and chemicals, has undergone considerable optimization for industrial applications. Even more, full-scale plants for ethanol production from syngas fermentation by pure cultures are being built worldwide. The composition of syngas depends on the feedstock gasified and the gasification conditions. However, it remains unclear how different syngas mixtures affect the metabolism of carboxidotrophs, including the ethanol/acetate ratios...
2017: Biotechnology for Biofuels
https://www.readbyqxmd.com/read/28934707/investigating-sources-and-sinks-of-n2o-expression-from-freshwater-microbial-communities-in-urban-watershed-sediments
#4
Christopher Weisener, Jumin Lee, Subba Rao Chaganti, Thomas Reid, Nick Falk, Ken Drouillard
Wastewater treatment plants (WWTPs) serve as point-source inputs for a variety of nutrients often dominated by nitrogenous compounds as a result of anthropogenic influence. These effluents can impact biogeochemical cycles in freshwater estuaries, influencing microbial communities in both the water and sediment compartments. To assess the impact of point source nutrients, a transect of sediment and pore water samples were collected from 4 locations in the Little River Sub-watershed including locations above and below the Little River Pollution Control Plant (LRPCP)...
September 11, 2017: Chemosphere
https://www.readbyqxmd.com/read/28932210/antibacterial-activity-of-endophytic-actinomycetes-isolated-from-the-medicinal-plant-vochysia-divergens-pantanal-brazil
#5
Francielly M W R Gos, Daiani C Savi, Khaled A Shaaban, Jon S Thorson, Rodrigo Aluizio, Yvelise M Possiede, Jürgen Rohr, Chirlei Glienke
Endophytic actinomycetes from medicinal plants produce a wide diversity of secondary metabolites (SM). However, to date, the knowledge about endophytes from Brazil remains scarce. Thus, we analyzed the antimicrobial potential of 10 actinomycetes isolated from the medicinal plant Vochysia divergens located in the Pantanal sul-mato-grossense, an unexplored wetland in Brazil. Strains were classified as belonging to the Aeromicrobium, Actinomadura, Microbacterium, Microbispora, Micrococcus, Sphaerisporangium, Streptomyces, and Williamsia genera, through morphological and 16S rRNA phylogenetic analyzes...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28931871/filtering-effect-of-temporal-niche-fluctuation-and-amplitude-of-environmental-variations-on-the-trait-related-flowering-patterns-lesson-from-sub-mediterranean-grasslands
#6
Andrea Catorci, Karina Piermarteri, Károly Penksza, Judit Házi, Federico Maria Tardella
Timing of flowering is a critical component of community assembly, but how plant traits respond to heterogeneity of resources has been identified mostly through observations of spatial variations. Thus, we performed a trait-based phenological study in sub-Mediterranean grasslands to assess the importance of temporal variation of resources in the species assemblage processes. We found that early flowering species have traits allowing for slow resource acquisition and storage but rapid growth rate. Instead, mid- and late-flowering species exhibited sets of strategies devoted to minimizing water loss by evapotranspiration or aimed at maximizing the species' competitive ability, thanks to slow growth rate and more efficient resource acquisition, conservation and use...
September 20, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28931073/bacterial-and-diazotrophic-diversities-of-endophytes-in-dendrobium-catenatum-determined-through-barcoded-pyrosequencing
#7
Ou Li, Rong Xiao, Lihua Sun, Chenglin Guan, Dedong Kong, Xiufang Hu
As an epiphyte orchid, Dendrobium catenatum relies on microorganisms for requisite nutrients. Metagenome pyrosequencing based on 16S rRNA and nifH genes was used to characterize the bacterial and diazotrophic communities associated with D. catenatum collected from 5 districts in China. Based on Meta-16S rRNA sequencing, 22 bacterial phyla and 699 genera were identified, distributed as 125 genera from 8 phyla and 319 genera from 10 phyla shared by all the planting bases and all the tissues, respectively. The predominant Proteobacteria varied from 71...
2017: PloS One
https://www.readbyqxmd.com/read/28930251/chemical-profiling-and-evaluation-of-antioxidant-and-anti-microbial-properties-of-selected-commercial-essential-oils-a-comparative-study
#8
Ângelo Luís, Ana Paula Duarte, Luísa Pereira, Fernanda Domingues
Background: The last decades have seen an increased awareness by the scientific community of the extent of resistance to conventional antibiotics, particularly with respect to the emerging multidrug-resistant pathogenic microbes. Additionally, natural antioxidants have received significant attention among food professionals and consumers because of their assumed safety and potential therapeutic value. The aim of this work was to assess the antioxidant activities of eight selected commercial essential oils (EOs), together with the evaluation of their antibacterial and anti-quorum sensing properties...
June 5, 2017: Medicines (Basel, Switzerland)
https://www.readbyqxmd.com/read/28930182/microbial-community-structure-and-functions-in-ethanol-fed-sulfate-removal-bioreactors-for-treatment-of-mine-water
#9
Malin Bomberg, Jarno Mäkinen, Marja Salo, Mona Arnold
Sulfate-rich mine water must be treated before it is released into natural water bodies. We tested ethanol as substrate in bioreactors designed for biological sulfate removal from mine water containing up to 9 g L(-1) sulfate, using granular sludge from an industrial waste water treatment plant as inoculum. The pH, redox potential, and sulfate and sulfide concentrations were measured twice a week over a maximum of 171 days. The microbial communities in the bioreactors were characterized by qPCR and high throughput amplicon sequencing...
September 20, 2017: Microorganisms
https://www.readbyqxmd.com/read/28929212/an-insight-into-phage-diversity-at-environmental-habitats-using-comparative-metagenomics-approach
#10
Krupa Parmar, Nishant Dafale, Rajesh Pal, Hitesh Tikariha, Hemant Purohit
Bacteriophages play significant role in driving microbial diversity; however, little is known about the diversity of phages in different ecosystems. A dynamic predator-prey mechanism called "kill the winner" suggests the elimination of most active bacterial populations through phages. Thus, interaction between phage and host has an effect on the composition of microbial communities in ecosystems. In this study, secondary phage metagenome data from aquatic habitats: wastewater treatment plant (WWTP), fresh, marine, and hot water spring habitat were analyzed using MG-RAST and STAMP tools to explore the diversity of the viruses...
September 19, 2017: Current Microbiology
https://www.readbyqxmd.com/read/28928727/composted-cattle-manure-increases-microbial-activity-and-soil-fertility-more-than-composted-swine-manure-in-a-submerged-rice-paddy
#11
Suvendu Das, Seung Tak Jeong, Subhasis Das, Pil Joo Kim
Livestock waste composts with minimum inorganic fertilizer as a soil amendment in low-input intensive farming are a feasible agricultural practice to improve soil fertility and productivity and to mitigate soil degradation. The key benefits of the practice rely on the activities of soil microorganisms. However, the role of different livestock composts [composted cattle manure (CCM) vs. composted swine manure (CSM)] on soil microbes, their activities and the overall impact on soil fertility and productivity in a flooded paddy remains elusive...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28926606/links-between-plant-and-fungal-diversity-in-habitat-fragments-of-coastal-shrubland
#12
Mia R Maltz, Kathleen K Treseder, Krista L McGuire
Habitat fragmentation is widespread across ecosystems, detrimentally affecting biodiversity. Although most habitat fragmentation studies have been conducted on macroscopic organisms, microbial communities and fungal processes may also be threatened by fragmentation. This study investigated whether fragmentation, and the effects of fragmentation on plants, altered fungal diversity and function within a fragmented shrubland in southern California. Using fluorimetric techniques, we assayed enzymes from plant litter collected from fragments of varying sizes to investigate enzymatic responses to fragmentation...
2017: PloS One
https://www.readbyqxmd.com/read/28924511/barcoded-ns31-aml2-primers-for-sequencing-of-arbuscular-mycorrhizal-communities-in-environmental-samples
#13
Benjamin S T Morgan, Louise M Egerton-Warburton
PREMISE OF THE STUDY: Arbuscular mycorrhizal fungi (AMF) are globally important root symbioses that enhance plant growth and nutrition and influence ecosystem structure and function. To better characterize levels of AMF diversity relevant to ecosystem function, deeper sequencing depth in environmental samples is needed. In this study, Illumina barcoded primers and a bioinformatics pipeline were developed and applied to study AMF diversity and community structure in environmental samples...
August 2017: Applications in Plant Sciences
https://www.readbyqxmd.com/read/28923966/amazon-plant-diversity-revealed-by-a-taxonomically-verified-species-list
#14
Domingos Cardoso, Tiina Särkinen, Sara Alexander, André M Amorim, Volker Bittrich, Marcela Celis, Douglas C Daly, Pedro Fiaschi, Vicki A Funk, Leandro L Giacomin, Renato Goldenberg, Gustavo Heiden, João Iganci, Carol L Kelloff, Sandra Knapp, Haroldo Cavalcante de Lima, Anderson F P Machado, Rubens Manoel Dos Santos, Renato Mello-Silva, Fabián A Michelangeli, John Mitchell, Peter Moonlight, Pedro Luís Rodrigues de Moraes, Scott A Mori, Teonildes Sacramento Nunes, Terry D Pennington, José Rubens Pirani, Ghillean T Prance, Luciano Paganucci de Queiroz, Alessandro Rapini, Ricarda Riina, Carlos Alberto Vargas Rincon, Nádia Roque, Gustavo Shimizu, Marcos Sobral, João Renato Stehmann, Warren D Stevens, Charlotte M Taylor, Marcelo Trovó, Cássio van den Berg, Henk van der Werff, Pedro Lage Viana, Charles E Zartman, Rafaela Campostrini Forzza
Recent debates on the number of plant species in the vast lowland rain forests of the Amazon have been based largely on model estimates, neglecting published checklists based on verified voucher data. Here we collate taxonomically verified checklists to present a list of seed plant species from lowland Amazon rain forests. Our list comprises 14,003 species, of which 6,727 are trees. These figures are similar to estimates derived from nonparametric ecological models, but they contrast strongly with predictions of much higher tree diversity derived from parametric models...
September 18, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/28921844/functional-traits-determine-tree-growth-and-ecosystem-productivity-of-a-tropical-montane-forest-insights-from-a-long-term-nutrient-manipulation-experiment
#15
Selene Báez, Jürgen Homeier
Trait response-effects are critical to forecast community structure and biomass production in highly diverse tropical forests. Ecological theory and few observation studies indicate that trees with acquisitive functional traits would respond more strongly to higher resource availability than those with conservative traits. We assessed how long-term tree growth in experimental nutrient addition plots (N, P and N+P) varied as a function of morphological traits, tree size and species identity. We also evaluated how trait-based responses affected stand scale biomass production considering the community structure...
September 18, 2017: Global Change Biology
https://www.readbyqxmd.com/read/28921802/environmental-dna-metabarcoding-transforming-how-we-survey-animal-and-plant-communities
#16
Kristy Deiner, Holly M Bik, Elvira Mächler, Mathew Seymour, Anaïs Lacoursière-Roussel, Florian Altermatt, Simon Creer, Iliana Bista, David M Lodge, Natasha de Vere, Michael E Pfrender, Louis Bernatchez
The genomic revolution has fundamentally changed how we survey biodiversity on earth. High-throughput sequencing ('HTS') platforms now enable the rapid sequencing of DNA from diverse kinds of environmental samples (termed 'environmental DNA' or 'eDNA'). Coupling HTS with our ability to associate sequences from eDNA with a taxonomic name is called 'eDNA metabarcoding' and offers a powerful molecular tool capable of non-invasively surveying species richness from many ecosystems. Here, we review the use of eDNA metabarcoding for surveying animal and plant richness, and the challenges in using eDNA approaches to estimate relative abundance...
September 16, 2017: Molecular Ecology
https://www.readbyqxmd.com/read/28920414/metagenomic-analysis-of-bacterial-community-structure-and-diversity-of-lignocellulolytic-bacteria-in-vietnamese-native-goat-rumen
#17
Huyen Thi Do, Khoa Trong Dao, Viet Khanh Hoang Nguyen, Giang Ngoc Le, Phuong Thi Mai Nguyen, Lam Tung Le, Nguyet Thu Phung, Nico van Straalen, Dick Roelofs, Hai Nam Truong
Objective: In a previous study, analysis of Illumina sequenced metagenomic DNA data of bacteria in Vietnamese goats' rumen showed a high diversity of putative lignocellulolytic genes. In this study, taxonomy speculation of microbial community and lignocellulolytic bacteria population in the rumen was conducted to elucidate a role of bacterial structure for effective degradation of plant materials. Methods: The metagenomic data had been subjected into Basic Local Alignment Search Tool (BLASTX) algorithm and the National Center for Biotechnology Information (NCBI) non-redundant (NR) sequence database...
September 18, 2017: Asian-Australasian Journal of Animal Sciences
https://www.readbyqxmd.com/read/28919882/effects-of-soil-pre-treatment-with-basamid%C3%A2-granules-brassica-juncea-raphanus-sativus-and-tagetes-patula-on-bacterial-and-fungal-communities-at-two-apple-replant-disease-sites
#18
Bunlong Yim, Heike Nitt, Andreas Wrede, Samuel Jacquiod, Søren J Sørensen, Traud Winkelmann, Kornelia Smalla
Nurseries producing apple and rose rootstock plants, apple orchards as well as rose production often experience replanting problems after several cultivations at the same site when a chemical soil disinfectant is not applied. The etiology of apple and rose replanting problems is most likely caused by soil-borne pathogen complex, defined as "replant disease (RD)". Symptoms typical of RD are reduced shoot and root growth, a smaller leaf area, a significant decrease in plant biomass, yield and fruit quality and a shorter life span...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28917974/cross-cultural-analysis-of-medicinal-plants-commonly-used-in-ethnoveterinary-practices-at-south-waziristan-agency-and-bajaur-agency-federally-administrated-tribal-areas-fata-pakistan
#19
Muhammad Abdul Aziz, Muhammad Adnan, Amir Hasan Khan, Muhammad Sufyan, Shahid Niaz Khan
ETHNOPHARMACOLOGICAL RELEVANCE: In remote areas, medicinal plants have an imperative role in curing various livestock's ailments. In Pakistan, people residing in remote areas including South Waziristan Agency and Bajaur Agency depend on traditional herbal remedies for treating their domestic animals. Medicinal plants are an important part of the medical system in these Agencies. The prime goal of the current study is to explore the ethnoveterinary practices in the two regions and discuss cross-cultural consensus on the use of medicinal plants...
September 14, 2017: Journal of Ethnopharmacology
https://www.readbyqxmd.com/read/28916787/late-permian-wood-borings-reveal-an-intricate-network-of-ecological-relationships
#20
Zhuo Feng, Jun Wang, Ronny Rößler, Adam Ślipiński, Conrad Labandeira
Beetles are the most diverse group of macroscopic organisms since the mid-Mesozoic. Much of beetle speciosity is attributable to myriad life habits, particularly diverse-feeding strategies involving interactions with plant substrates, such as wood. However, the life habits and early evolution of wood-boring beetles remain shrouded in mystery from a limited fossil record. Here we report new material from the upper Permian (Changhsingian Stage, ca. 254-252 million-years ago) of China documenting a microcosm of ecological associations involving a polyphagan wood-borer consuming cambial and wood tissues of the conifer Ningxiaites specialis...
September 15, 2017: Nature Communications
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