keyword
https://read.qxmd.com/read/38549312/optimal-strategies-of-oncolytic-virus-bortezomib-therapy-via-the-apoptotic-necroptotic-and-oncolysis-signaling-network
#1
JOURNAL ARTICLE
Donggu Lee, Aurelio A de Los Reyes V, Yangjin Kim
Bortezomib and oncolytic virotherapy are two emerging targeted cancer therapies. Bortezomib, a proteasome inhibitor, disrupts protein degradation in cells, leading to the accumulation of unfolded proteins that induce apoptosis. On the other hand, virotherapy uses genetically modified oncolytic viruses (OVs) to infect cancer cells, trigger cell lysis, and activate anti-tumor response. Despite progress in cancer treatment, identifying administration protocols for therapeutic agents remains a significant concern, aiming to strike a balance between efficacy, minimizing toxicity, and administrative costs...
February 21, 2024: Mathematical Biosciences and Engineering: MBE
https://read.qxmd.com/read/38528936/shape-programming-in-hyperelasticity-through-differential-growth
#2
JOURNAL ARTICLE
Rogelio Ortigosa-Martínez, Jesús Martínez-Frutos, Carlos Mora-Corral, Pablo Pedregal, Francisco Periago
This paper is concerned with the growth-driven shape-programming problem, which involves determining a growth tensor that can produce a deformation on a hyperelastic body reaching a given target shape. We consider the two cases of globally compatible growth, where the growth tensor is a deformation gradient over the undeformed domain, and the incompatible one, which discards such hypothesis. We formulate the problem within the framework of optimal control theory in hyperelasticity. The Hausdorff distance is used to quantify dissimilarities between shapes; the complexity of the actuation is incorporated in the cost functional as well...
2024: Applied Mathematics and Optimization
https://read.qxmd.com/read/38499582/derivation-of-dirac-equation-from-the-stochastic-optimal-control-principles-of-quantum-mechanics
#3
JOURNAL ARTICLE
Vasil Yordanov
In this paper, we present a stochastic approach to relativistic quantum mechanics. We formulate the three fundamental principles of this theory and derive the Dirac equations based on them. This approach enables us to bring more insight into the nature of Dirac's spinors. Furthermore, we provide a physical interpretation of the stochastic optimal control theory of quantum mechanics.
March 18, 2024: Scientific Reports
https://read.qxmd.com/read/38498322/optimal-carbon-storage-during-drought
#4
JOURNAL ARTICLE
Elisa Z Stefaniak, David T Tissue, Roderick C Dewar, Belinda E Medlyn
Allocation of non-structural carbohydrates (NSC) to storage allows plants to maintain a carbon pool in anticipation of future stress. However, to do so, plants must forego use of the carbon for growth, creating a trade-off between storage and growth. It is possible that plants actively regulate the storage pool to maximise fitness in a stress-prone environment. Here, we attempt to identify the patterns of growth and storage that would result during drought stress under the hypothesis that plants actively regulate carbon storage...
March 18, 2024: Tree Physiology
https://read.qxmd.com/read/38410651/optimal-control-of-collective-electrotaxis-in-epithelial-monolayers
#5
Simon F Martina-Perez, Isaac B Breinyn, Daniel J Cohen, Ruth E Baker
Epithelial monolayers are some of the best-studied models for collective cell migration due to their abundance in multicellular systems and their tractability. Experimentally, the collective migration of epithelial monolayers can be robustly steered e.g. using electric fields, via a process termed electrotaxis. Theoretically, however, the question of how to design an electric field to achieve a desired spatiotemporal movement pattern is underexplored. In this work, we construct and calibrate an ordinary differential equation model to predict the average velocity of the centre of mass of a cellular monolayer in response to stimulation with an electric field...
February 13, 2024: ArXiv
https://read.qxmd.com/read/38375903/optimal-control-of-n-h-photodissociation-of-pyridinyl
#6
JOURNAL ARTICLE
Mohammed Alamgir, Susanta Mahapatra
The N-H photodissociation dynamics of the pyridinyl radical upon continuous excitation to the optically bright, first excited ππ* electronic state by an ultra-violet (UV) laser pulse has been investigated within the mathematical framework of optimal control theory. The genetic algorithm (GA) is employed as the optimization protocol. We considered a three-state and three-mode model Hamiltonian, which includes the reaction coordinate, R (a1 symmetry); the coupling coordinates (namely, out-of-plane bending coordinate of the hydrogen atom of azine group), Θ (b1 symmetry); and the wagging mode, Q9 (a2 symmetry)...
February 21, 2024: Journal of Chemical Physics
https://read.qxmd.com/read/38369811/optimal-control-of-a-multi-scale-hiv-opioid-model
#7
JOURNAL ARTICLE
Eric Numfor, Necibe Tuncer, Maia Martcheva
In this study, we apply optimal control theory to an immuno-epidemiological model of HIV and opioid epidemics. For the multi-scale model, we used four controls: treating the opioid use, reducing HIV risk behaviour among opioid users, entry inhibiting antiviral therapy, and antiviral therapy which blocks the viral production. Two population-level controls are combined with two within-host-level controls. We prove the existence and uniqueness of an optimal control quadruple. Comparing the two population-level controls, we find that reducing the HIV risk of opioid users has a stronger impact on the population who is both HIV-infected and opioid-dependent than treating the opioid disorder...
December 2024: Journal of Biological Dynamics
https://read.qxmd.com/read/38364000/shaping-the-laser-control-landscape-of-a-hydrogen-transfer-reaction-by-vibrational-strong-coupling-a-direct-optimal-control-approach
#8
JOURNAL ARTICLE
A R Ramos Ramos, E W Fischer, P Saalfrank, O Kühn
Controlling molecular reactivity by shaped laser pulses is a long-standing goal in chemistry. Here, we suggest a direct optimal control approach that combines external pulse optimization with other control parameters arising in the upcoming field of vibro-polaritonic chemistry for enhanced controllability. The direct optimal control approach is characterized by a simultaneous simulation and optimization paradigm, meaning that the equations of motion are discretized and converted into a set of holonomic constraints for a nonlinear optimization problem given by the control functional...
February 21, 2024: Journal of Chemical Physics
https://read.qxmd.com/read/38325284/a-stochastic-dynamic-programming-model-for-the-optimal-policy-mix-of-the-carbon-tax-and-decarbonization-subsidy
#9
JOURNAL ARTICLE
Yuhan Li, Xiaoshan Su, Manying Bai
Carbon tax and decarbonization subsidy are an effective policy mix in reducing carbon emissions. However, there is a research gap between the deterministic and static analysis related to carbon reduction policy instruments and the dynamic green transition influenced by stochastic factors. This research investigates the optimal dynamic carbon reduction strategies that develop green technologies, increase abatement inputs, and reduce carbon emissions by applying the stochastic optimal control theory. Firms that are incentivized by decarbonization subsidies and regulated by carbon tax choose optimal closed-loop control strategies of abatement inputs to achieve profit-maximizing objectives with carbon reduction constraints...
February 6, 2024: Journal of Environmental Management
https://read.qxmd.com/read/38320113/entanglement-generation-of-polar-molecules-via-deep-reinforcement-learning
#10
JOURNAL ARTICLE
Zuo-Yuan Zhang, Zhaoxi Sun, Tao Duan, Yi-Kai Ding, Xinning Huang, Jin-Ming Liu
Polar molecules are a promising platform for achieving scalable quantum information processing because of their long-range electric dipole-dipole interactions. Here, we take the coupled ultracold CaF molecules in an external electric field with gradient as qubits and concentrate on the creation of intermolecular entanglement with the method of deep reinforcement learning (RL). After sufficient training episodes, the educated RL agents can discover optimal time-dependent control fields that steer the molecular systems from separate states to two-qubit and three-qubit entangled states with high fidelities...
February 6, 2024: Journal of Chemical Theory and Computation
https://read.qxmd.com/read/38246323/the-impact-of-radio-chemotherapy-on-tumour-cells-interaction-with-optimal-control-and-sensitivity-analysis
#11
JOURNAL ARTICLE
Arjun Kumar, Uma S Dubey, Balram Dubey
Oncologists and applied mathematicians are interested in understanding the dynamics of cancer-immune interactions, mainly due to the unpredictable nature of tumour cell proliferation. In this regard, mathematical modelling offers a promising approach to comprehend this potentially harmful aspect of cancer biology. This paper presents a novel dynamical model that incorporates the interactions between tumour cells, healthy tissue cells, and immune-stimulated cells when subjected to simultaneous chemotherapy and radiotherapy for treatment...
January 19, 2024: Mathematical Biosciences
https://read.qxmd.com/read/38189746/dual-therapy-of-cancer-using-optimal-control-supported-by-swarm-intelligence
#12
JOURNAL ARTICLE
Poh Ling Tan, Jeevan Kanesan, Joon Huang Chuah, Irfan Anjum Badruddin, Abdallah Abdellatif, Sarfaraz Kamangar, Mohamed Hussien, Maughal Ahmed Ali Baig, N Ameer Ahammad
BACKGROUND: The scientific revolution in the treatment of many illnesses has been significantly aided by stem cells. This paper presents an optimal control on a mathematical model of chemotherapy and stem cell therapy for cancer treatment. OBJECTIVE: To develop effective hybrid techniques that combine the optimal control theory (OCT) with the evolutionary algorithm and multi-objective swarm algorithm. The developed technique is aimed to reduce the number of cancerous cells while utilizing the minimum necessary chemotherapy medications and minimizing toxicity to protect patients' health...
December 28, 2023: Bio-medical Materials and Engineering
https://read.qxmd.com/read/38169893/designing-clinical-trials-for-patients-who-are-not-average
#13
REVIEW
Thomas E Yankeelov, David A Hormuth, Ernesto A B F Lima, Guillermo Lorenzo, Chengyue Wu, Lois C Okereke, Gaiane M Rauch, Aradhana M Venkatesan, Caroline Chung
The heterogeneity inherent in cancer means that even a successful clinical trial merely results in a therapeutic regimen that achieves, on average, a positive result only in a subset of patients. The only way to optimize an intervention for an individual patient is to reframe their treatment as their own, personalized trial. Toward this goal, we formulate a computational framework for performing personalized trials that rely on four mathematical techniques. First, mathematical models that can be calibrated with patient-specific data to make accurate predictions of response...
January 19, 2024: IScience
https://read.qxmd.com/read/38010330/simulation-of-quantum-walks-on-a-circle-with-polar-molecules-via-optimal-control
#14
JOURNAL ARTICLE
Yi-Kai Ding, Zuo-Yuan Zhang, Jin-Ming Liu
Quantum walks are the quantum counterpart of classical random walks and have various applications in quantum information science. Polar molecules have rich internal energy structure and long coherence time and thus are considered as a promising candidate for quantum information processing. In this paper, we propose a theoretical scheme for implementing discrete-time quantum walks on a circle with dipole-dipole coupled SrO molecules. The states of the walker and the coin are encoded in the pendular states of polar molecules induced by an external electric field...
November 28, 2023: Journal of Chemical Physics
https://read.qxmd.com/read/37972560/optimal-control-of-gene-regulatory-networks-for-morphogen-driven-tissue-patterning
#15
JOURNAL ARTICLE
Alberto Pezzotta, James Briscoe
The generation of distinct cell types in developing tissues depends on establishing spatial patterns of gene expression. Often, this is directed by spatially graded chemical signals-known as morphogens. In the "French Flag model," morphogen concentration instructs cells to acquire specific fates. How this mechanism produces timely and organized cell-fate decisions, despite the presence of changing morphogen levels, molecular noise, and individual variability, is unclear. Moreover, feedback is present at various levels in developing tissues, breaking the link between morphogen concentration, signaling activity, and position...
November 15, 2023: Cell Systems
https://read.qxmd.com/read/37800167/optimizing-combination-therapy-in-a-murine-model-of-her2-breast-cancer
#16
JOURNAL ARTICLE
Ernesto A B F Lima, Reid A F Wyde, Anna G Sorace, Thomas E Yankeelov
Human epidermal growth factor receptor 2 positive (HER2+) breast cancer is frequently treated with drugs that target the HER2 receptor, such as trastuzumab, in combination with chemotherapy, such as doxorubicin. However, an open problem in treatment design is to determine the therapeutic regimen that optimally combines these two treatments to yield optimal tumor control. Working with data quantifying temporal changes in tumor volume due to different trastuzumab and doxorubicin treatment protocols in a murine model of human HER2+ breast cancer, we propose a complete framework for model development, calibration, selection, and treatment optimization to find the optimal treatment protocol...
December 1, 2022: Computer Methods in Applied Mechanics and Engineering
https://read.qxmd.com/read/37766098/understanding-the-impact-of-vaccination-and-self-defense-measures-on-epidemic-dynamics-using-an-embedded-optimization-and-evolutionary-game-theory-methodology
#17
JOURNAL ARTICLE
K M Ariful Kabir, M D Shahidul Islam, Mohammad Sharif Ullah
Explaining how individual choice and government policy can appear in the same context in real society is one of the most challenging scientific problems. Controlling infectious diseases requires effective prevention and control measures, including vaccination and self-defense measures. In this context, optimal control strategies incorporating vaccination and self-defense measures have been proposed using the framework of evolutionary game theory. This approach accounts for individuals' behavior and interactions in a population...
August 25, 2023: Vaccines
https://read.qxmd.com/read/37695860/optimal-control-and-cost-effectiveness-analysis-for-leptospirosis-epidemic
#18
JOURNAL ARTICLE
Habtamu Ayalew Engida, David Mwangi Theuri, Duncan Kioi Gathungu, John Gachohi
This paper aims to apply an optimal control theory for the autonomous model of the leptospirosis epidemic to examine the effect of four time-dependent control measures on the model dynamics with cost-effectiveness. Pontryagin's Maximum Principle was used to derive the optimality system associated with the optimal control problem. Numerical simulations of the optimality system were performed for different control strategies and the results were presented graphically with and without controls. The optimality system was simulated using the Forward-Backward Sweep method in the Matlab programme...
December 2023: Journal of Biological Dynamics
https://read.qxmd.com/read/37688714/towards-optimal-control-of-amyloid-fibrillation
#19
JOURNAL ARTICLE
Mengshou Wang, Gao Li, Liangrong Peng, Liu Hong
Epigallocatechin-3-gallate, as a representative amyloid inhibitors, has shown a promising ability against A[Formula: see text] fibrillation by directly degradating the mature fibrils. Most previous studies have been focusing on its functional mechanisms, meanwhile its optimal dosage has been seldom considered. To solve this critical issue, we refer to the generalized Logistic model for amyloid fibrillation and inhibition and adopt the optimal control theory to balance the effectiveness and cost (or toxicity) of inhibitors...
September 9, 2023: Bulletin of Mathematical Biology
https://read.qxmd.com/read/37668911/simultaneous-behavioral-and-neuronal-imaging-by-tracking-microscopy
#20
JOURNAL ARTICLE
Drew N Robson, Jennifer M Li
Tracking microscopy enables whole-brain cellular resolution imaging in freely swimming animals. This technique enables both structural and functional imaging without immobilizing the animal, and greatly expands the range of the behaviors accessible to neuroscientists. We use infrared imaging to track the target animal in a behavioral arena. Based on the predicted trajectory of the brain, we apply optimal control theory to a motorized stage system to cancel brain motion in three dimensions. We have combined this motion cancellation system with Differential Illumination Focal Filtering (DIFF), a form of structured illumination microscopy, which enables us to image the brain of a freely swimming larval zebrafish for over an hour...
2024: Methods in Molecular Biology
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