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Ecophysiology

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https://www.readbyqxmd.com/read/27898903/intestinal-lactose-and-mineral-concentration-affect-the-microbial-ecophysiology-along-the-gastrointestinal-tract-of-formula-fed-neonatal-piglets
#1
R Pieper, W Vahjen, J Zentek
Hyperprolificacy in modern pig breeds has led to increased use of artificial rearing and formula feeding of neonatal piglets, which may change their intestinal bacterial ecophysiology. Here, newborn piglets ( = 8 per group) were fed a bovine milk-based formula (FO) or allowed to suckle their mothers (sow milk [SM]) for 2 wk, and digesta samples from the stomach, jejunum, and colon were subsequently analyzed for enzyme activities, bacterial metabolites, and 16S rRNA transcripts of bacterial groups by quantitative real-time PCR...
September 2016: Journal of Animal Science
https://www.readbyqxmd.com/read/27892922/convergence-and-divergence-of-bitterness-biosynthesis-and-regulation-in-cucurbitaceae
#2
Yuan Zhou, Yongshuo Ma, Jianguo Zeng, Lixin Duan, Xiaofeng Xue, Huaisong Wang, Tao Lin, Zhiqiang Liu, Kewu Zeng, Yang Zhong, Shu Zhang, Qun Hu, Min Liu, Huimin Zhang, James Reed, Tessa Moses, Xinyan Liu, Peng Huang, Zhixing Qing, Xiubin Liu, Pengfei Tu, Hanhui Kuang, Zhonghua Zhang, Anne Osbourn, Dae-Kyun Ro, Yi Shang, Sanwen Huang
Differentiation of secondary metabolite profiles in closely related plant species provides clues for unravelling biosynthetic pathways and regulatory circuits, an area that is still underinvestigated. Cucurbitacins, a group of bitter and highly oxygenated tetracyclic triterpenes, are mainly produced by the plant family Cucurbitaceae. These compounds have similar structures, but differ in their antitumour activities and ecophysiological roles. By comparative analyses of the genomes of cucumber, melon and watermelon, we uncovered conserved syntenic loci encoding metabolic genes for distinct cucurbitacins...
November 28, 2016: Nature Plants
https://www.readbyqxmd.com/read/27892466/direct-evidence-for-microbial-derived-soil-organic-matter-formation-and-its-ecophysiological-controls
#3
Cynthia M Kallenbach, Serita D Frey, A Stuart Grandy
Soil organic matter (SOM) and the carbon and nutrients therein drive fundamental submicron- to global-scale biogeochemical processes and influence carbon-climate feedbacks. Consensus is emerging that microbial materials are an important constituent of stable SOM, and new conceptual and quantitative SOM models are rapidly incorporating this view. However, direct evidence demonstrating that microbial residues account for the chemistry, stability and abundance of SOM is still lacking. Further, emerging models emphasize the stabilization of microbial-derived SOM by abiotic mechanisms, while the effects of microbial physiology on microbial residue production remain unclear...
November 28, 2016: Nature Communications
https://www.readbyqxmd.com/read/27889831/an-ecophysiological-background-for-biogeographic-patterns-of-two-island-lizards
#4
Miguel A Carretero, Evandro P Lopes, Raquel Vasconcelos
Distributions of sedentary ectotherms are dependent on temperature and humidity due to their low homeostatic and dispersal abilities. Lizards are strongly conditioned by temperature, but hydric environment may be also important, at least in arid environments. Biotic interactions may also play a role in range patterns, but they are of minor importance in islands where native species monopolize well-delimited niche spaces. On the arid island of São Vicente (Cabo Verde), two endemic lizards display different spatial patterns...
December 2016: Die Naturwissenschaften
https://www.readbyqxmd.com/read/27888351/identity-ecology-and-ecophysiology-of-planktic-green-algae-dominating-in-ice-covered-lakes-on-james-ross-island-northeastern-antarctic-peninsula
#5
Linda Nedbalová, Martin Mihál, Jana Kvíderová, Lenka Procházková, Tomáš Řezanka, Josef Elster
The aim of this study was to assess the phylogenetic relationships, ecology and ecophysiological characteristics of the dominant planktic algae in ice-covered lakes on James Ross Island (northeastern Antarctic Peninsula). Phylogenetic analyses of 18S rDNA together with analysis of ITS2 rDNA secondary structure and cell morphology revealed that the two strains belong to one species of the genus Monoraphidium (Chlorophyta, Sphaeropleales, Selenastraceae) that should be described as new in future. Immotile green algae are thus apparently capable to become the dominant primary producer in the extreme environment of Antarctic lakes with extensive ice-cover...
November 25, 2016: Extremophiles: Life Under Extreme Conditions
https://www.readbyqxmd.com/read/27878385/the-effects-of-warming-on-the-ecophysiology-of-two-co-existing-kelp-species-with-contrasting-distributions
#6
Matthew S Hargrave, Andrew Foggo, Albert Pessarrodona, Dan A Smale
The northeast Atlantic has warmed significantly since the early 1980s, leading to shifts in species distributions and changes in the structure and functioning of communities and ecosystems. This study investigated the effects of increased temperature on two co-existing habitat-forming kelps: Laminaria digitata, a northern boreal species, and Laminaria ochroleuca, a southern Lusitanian species, to shed light on mechanisms underpinning responses of trailing and leading edge populations to warming. Kelp sporophytes collected from southwest United Kingdom were maintained under 3 treatments: ambient temperature (12 °C), +3 °C (15 °C) and +6 °C (18 °C) for 16 days...
November 23, 2016: Oecologia
https://www.readbyqxmd.com/read/27878347/detection-and-diversity-of-the-nitrite-oxidoreductase-alpha-subunit-nxra-gene-of-nitrospina-in-marine-sediments
#7
Sundas Rani, Hyeon-Woo Koh, Sung-Keun Rhee, Hirotsugu Fujitani, Soo-Je Park
Nitrite-oxidizing bacteria (NOB) are chemolithoautotrophs that catalyze the oxidation of nitrite to nitrate, which is the second step of aerobic nitrification. In marine ecosystems, Nitrospina is assumed to be a major contributor to nitrification. To date, two strains of Nitrospina have been isolated from marine environments. Despite their ecological relevance, their ecophysiology and environmental distribution are understudied owing to fastidious cultivation techniques and the lack of a sufficient functional gene marker...
November 22, 2016: Microbial Ecology
https://www.readbyqxmd.com/read/27878078/cool-habitats-support-darker-and-bigger-butterflies-in-australian-tropical-forests
#8
Shuang Xing, Timothy C Bonebrake, Chin Cheung Tang, Evan J Pickett, Wenda Cheng, Sasha E Greenspan, Stephen E Williams, Brett R Scheffers
Morphology mediates the relationship between an organism's body temperature and its environment. Dark organisms, for example, tend to absorb heat more quickly than lighter individuals, which could influence their responses to temperature. Therefore, temperature-related traits such as morphology may affect patterns of species abundance, richness, and community assembly across a broad range of spatial scales. In this study, we examined variation in color lightness and body size within butterfly communities across hot and cool habitats in the tropical woodland-rainforest ecosystems of northeast Queensland, Australia...
November 2016: Ecology and Evolution
https://www.readbyqxmd.com/read/27875010/nutrients-influence-the-thermal-ecophysiology-of-an-intertidal-macroalga-multiple-stressors-or-multiple-drivers
#9
Nicholas Colvard, Brian Helmuth
Urbanization of coastlines is leading to increased introduction of nutrients from the terrestrial environment to nearshore habitats. While such nutrient influxes can be detrimental to coastal marine organisms due to increased eutrophication and subsequent reduced oxygen, they could also have positive effects (i.e., increased food availability) on species that are nitrogen-limited such as macroalgae. Nutrient enrichment in this environment thus has the potential to counteract some of the negative impacts of increasing temperatures, at least for some species...
November 22, 2016: Ecological Applications: a Publication of the Ecological Society of America
https://www.readbyqxmd.com/read/27857706/a-combination-of-extreme-environmental-conditions-favor-the-prevalence-of-endospore-forming-firmicutes
#10
Sevasti Filippidou, Tina Wunderlin, Thomas Junier, Nicole Jeanneret, Cristina Dorador, Veronica Molina, David R Johnson, Pilar Junier
Environmental conditions unsuitable for microbial growth are the rule rather than the exception in most habitats. In response to this, microorganisms have developed various strategies to withstand environmental conditions that limit active growth. Endospore-forming Firmicutes (EFF) deploy a myriad of survival strategies in order to resist adverse conditions. Like many bacterial groups, they can form biofilms and detect nutrient scarcity through chemotaxis. Moreover, within this paraphyletic group of Firmicutes, ecophysiological optima are diverse...
2016: Frontiers in Microbiology
https://www.readbyqxmd.com/read/27857202/napb-in-excess-inhibits-growth-of-shewanella-oneidensis-by-dissipating-electrons-of-the-quinol-pool
#11
Miao Jin, Qianyun Zhang, Yijuan Sun, Haichun Gao
Shewanella, a group of ubiquitous bacteria renowned for respiratory versatility, thrive in environments where various electron acceptors (EAs) of different chemical and physiological characteristics coexist. Despite being extensively studied, we still know surprisingly little about strategies by which multiple EAs and their interaction define ecophysiology of these bacteria. Previously, we showed that nitrite inhibits growth of the genus representative Shewanella oneidensis on fumarate and presumably some other CymA (quinol dehydrogenase)-dependent EAs by reducing cAMP production, which in turn leads to lowered expression of nitrite and fumarate reductases...
November 18, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27853463/timing-effects-of-heat-stress-on-plant-ecophysiological-characteristics-and-growth
#12
Dan Wang, Scott A Heckathorn, Kumar Mainali, Rajan Tripathee
Heat-waves with higher intensity and frequency and longer durations are expected in the future due to global warming, which could have dramatic impacts in agriculture, economy and ecology. This field study examined how plant responded to heat-stress (HS) treatment at different timing in naturally occurring vegetation. HS treatment (5 days at 40.5°C) were applied to 12 1 m(2) plots in restored prairie vegetation dominated by a warm-season C4 grass, Andropogon gerardii, and a warm-season C3 forb, Solidago canadensis, at different growing stages...
2016: Frontiers in Plant Science
https://www.readbyqxmd.com/read/27852759/a-place-for-host-microbe-symbiosis-in-the-comparative-physiologist-s-toolbox
#13
REVIEW
Kevin D Kohl, Hannah V Carey
Although scientists have long appreciated that metazoans evolved in a microbial world, we are just beginning to appreciate the profound impact that host-associated microbes have on diverse aspects of animal biology. The enormous growth in our understanding of host-microbe symbioses is rapidly expanding the study of animal physiology, both technically and conceptually. Microbes associate functionally with various body surfaces of their hosts, although most reside in the gastrointestinal tract. Gut microbes convert dietary and host-derived substrates to metabolites such as short-chain fatty acids, thereby providing energy and nutrients to the host...
November 15, 2016: Journal of Experimental Biology
https://www.readbyqxmd.com/read/27845372/ecotypic-differentiation-matters-for-latitudinal-variation-in-energy-metabolism-and-flight-performance-in-a-butterfly-under-climate-change
#14
Hans Van Dyck, Marie-Jeanne Holveck
Life histories of organisms may vary with latitude as they experience different thermal constraints and challenges. This geographic, intraspecific variation could be of significance for range dynamics under climate change beyond edge-core comparisons. In this study, we did a reciprocal transplant experiment between the temperature-regimes of two latitudes with an ectotherm insect, examining the effects on energy metabolism and flight performance. Pararge aegeria expanded its ecological niche from cool woodland (ancestral) to warmer habitat in agricultural landscape (novel ecotype)...
November 15, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27836842/microdiversification-of-a-pelagic-polynucleobacter-species-is-mainly-driven-by-acquisition-of-genomic-islands-from-a-partially-interspecific-gene-pool
#15
Matthias Hoetzinger, Johanna Schmidt, Jitka Jezberová, Ulrike Koll, Martin W Hahn
: Microdiversification of a planktonic freshwater bacterium was studied by comparing 37 Polynucleobacter asymbioticus strains obtained from three geographically separated sites in the Austrian Alps. Genome comparison of nine strains revealed a core genome of 1.8 Mb, representing 81% of the average genome size. Seventy-five percent of the remaining flexible genome are clustered in genomic islands (GIs). Twenty-four genomic positions could be identified where GIs are potentially located...
November 11, 2016: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/27832305/constructed-wetlands-revisited-microbial-diversity-in-the-omics-era
#16
REVIEW
Olga Sánchez
Constructed wetlands (CWs) constitute an interesting alternative option to conventional systems for wastewater treatment. This technology is based on the utilization of the concerted activity of microorganisms for the removal of contaminants. Consequently, knowledge on the microbial assemblages dwelling CWs and the different environmental factors which can alter their activities is crucial for understanding their performance. In the last decades, the use of molecular techniques to characterize these communities and more recently, application of -omics tools, have broaden our view of microbial diversity and function in wastewater microbiology...
November 10, 2016: Microbial Ecology
https://www.readbyqxmd.com/read/27815157/excretion-and-measurement-of-corticosterone-and-testosterone-metabolites-in-bank-voles-myodes-glareolus
#17
Saana Sipari, Hannu Ylönen, Rupert Palme
The bank vole is a commonly used model species in behavioral and ecophysiological studies. Thus, presenting a validated method for noninvasive monitoring of corticosterone and testosterone secretion is of high relevance. Here, we evaluated the effect of time of day and an ACTH challenge test on measured fecal corticosterone (FCM) and testosterone (FTM) metabolites in both sexes. Furthermore, we performed radiometabolism experiments for both steroids and sexes to study metabolism and excretion of (3)H-corticosterone and (3)H-testosterone...
November 1, 2016: General and Comparative Endocrinology
https://www.readbyqxmd.com/read/27814569/deciphering-the-ecophysiological-traits-involved-during-water-stress-acclimation-and-recovery-of-the-threatened-wild-carnation-dianthus-inoxianus
#18
Javier López-Jurado, Francisco Balao, Enrique Mateos-Naranjo
Dianthus inoxianus is an endangered species endemic from a small littoral area in the SW Spain, with an unusual flowering season under the adverse conditions of dry Mediterranean summer. A greenhouse experiment was designed to assess the physiological traits involved in drought acclimation and recovery of 3-month-old plants. The evolution of plant water status, leaf gas exchange, chlorophyll fluorescence, photosynthetic pigments concentrations and a quantitative analysis of photosynthesis limitations were followed during water stress and re-watering...
October 27, 2016: Plant Physiology and Biochemistry: PPB
https://www.readbyqxmd.com/read/27810446/aspergillus-westerdijkiae-as-a-major-ochratoxin-a-risk-in-dry-cured-ham-based-media
#19
Ziva Vipotnik, Alicia Rodríguez, Paula Rodrigues
Penicillium nordicum is well known for its ability to produce high amounts of ochratoxin A (OTA) in cured meat-derived products. On the other hand, Aspergillus westerdijkiae, one of the most relevant OTA-producing species of the genus Aspergillus, is usually considered a major risk in carbon-rich food matrices of plant origin. The objective of this work was to evaluate, for the first time, the ecophysiological conditions governing growth, OTA production and sporulation of A. westerdijkiae (the type-strain and one ham-native strain), in comparison with P...
October 26, 2016: International Journal of Food Microbiology
https://www.readbyqxmd.com/read/27806730/comparative-physiological-plasticity-to-desiccation-in-distinct-populations-of-the-malarial-mosquito-anopheles-coluzzii
#20
K Hidalgo, D Siaussat, V Braman, K R Dabiré, F Simard, K Mouline, D Renault
BACKGROUND: In West Africa, populations of the malaria vector mosquito, Anopheles coluzzii, are seasonally exposed to strong desiccating conditions during the dry season. Their dynamics strictly follows the pace of the availability of suitable larval development sites (water collections). Accordingly, mosquitoes can reproduce all year long where permanent breeding is possible, or stop reproduction and virtually disappear at the onset of the dry season when surface water dries up, like observed in temporary habitats of dry savannah areas...
November 2, 2016: Parasites & Vectors
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