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https://www.readbyqxmd.com/read/27894420/structural-basis-for-the-recognition-of-spliceosomal-smn-b-b-proteins-by-the-rbm5-ocre-domain-in-splicing-regulation
#1
André Mourão, Sophie Bonnal, Komal Soni, Lisa Warner, Rémy Bordonné, Juan Valcárcel, Michael Sattler
The multi-domain splicing factor RBM5 regulates the balance between antagonistic isoforms of the apoptosis-control genes FAS/CD95, Caspase-2 and AID. An OCRE (OCtamer REpeat of aromatic residues) domain found in RBM5 is important for alternative splicing regulation and mediates interactions with components of the U4/U6.U5 tri-snRNP. We show that the RBM5 OCRE domain adopts a unique β-sheet fold. NMR and biochemical experiments demonstrate that the OCRE domain directly binds to the proline-rich C-terminal tail of the essential snRNP core proteins SmN/B/B'...
November 29, 2016: ELife
https://www.readbyqxmd.com/read/27520449/rbm5-as1-is-critical-for-self-renewal-of-colon-cancer-stem-like-cells
#2
Serena Di Cecilia, Fan Zhang, Ana Sancho, SiDe Li, Francesca Aguiló, Yifei Sun, Madhumitha Rengasamy, Weijia Zhang, Luigi Del Vecchio, Francesco Salvatore, Martin J Walsh
Cancer-initiating cells (CIC) undergo asymmetric growth patterns that increase phenotypic diversity and drive selection for chemotherapeutic resistance and tumor relapse. WNT signaling is a hallmark of colon CIC, often caused by APC mutations, which enable activation of β-catenin and MYC Accumulating evidence indicates that long noncoding RNAs (lncRNA) contribute to the stem-like character of colon cancer cells. In this study, we report enrichment of the lncRNA RBM5-AS1/LUST during sphere formation of colon CIC...
October 1, 2016: Cancer Research
https://www.readbyqxmd.com/read/26964645/integrative-analysis-of-microrna-and-mrna-expression-profiles-in-non-small-cell-lung-cancer
#3
C Yang, C Sun, X Liang, S Xie, J Huang, D Li
Non-small-cell lung cancer (NSCLC) represents the most common deadly disease. Emerging evidences suggest that abnormal epigenetic modulation via mRNAs and microRNAs (miRNAs) might be involved in the tumorigenesis. To explore novel therapeutic target of NSCLC, a more detailed mRNAs and miRNA expression profiling study is needed. High-quality total RNA including miRNA was isolated from NSCLC tissue and para-carcinoma tissue and used for RNA and small RNA sequencing. Results were analyzed bioinformatically and validated using quantitative real-time (qRT)-PCR...
April 2016: Cancer Gene Therapy
https://www.readbyqxmd.com/read/26923134/overexpression-of-rbm5-induces-autophagy-in-human-lung-adenocarcinoma-cells
#4
Zhenzhong Su, Ke Wang, Ranwei Li, Jinzhi Yin, Yuqiu Hao, Xuejiao Lv, Junyao Li, Lijing Zhao, Yanwei Du, Ping Li, Jie Zhang
BACKGROUND: Dysfunctions in autophagy and apoptosis are closely interacted and play an important role in cancer development. RNA binding motif 5 (RBM5) is a tumor suppressor gene, which inhibits tumor cells' growth and enhances chemosensitivity through inducing apoptosis in our previous studies. In this study, we investigated the relationship between RBM5 overexpression and autophagy in human lung adenocarcinoma cells. METHODS: Human lung adenocarcinoma cancer (A549) cells were cultured in vitro and were transiently transfected with a RBM5 expressing plasmid (GV287-RBM5) or plasmid with scrambled control sequence...
2016: World Journal of Surgical Oncology
https://www.readbyqxmd.com/read/26784654/co-and-post-transcriptional-regulation-of-rbm5-and-rbm10-in-mouse-cells-as-evidenced-by-tissue-specific-developmental-and-disease-associated-variation-of-splice-variant-and-protein-expression-levels
#5
Bartholomew Ozuemba, Twinkle J Masilamani, Julie J Loiselle, Benjamin Koenderink, Kaitlin A Vanderbeck, Jose Knee, Céline Larivière, Leslie C Sutherland
BACKGROUND: Expression and function of the two RNA binding proteins and regulators of alternative splicing, RBM5 and RBM10, have largely been studied in human tissue and cell lines. The objective of the study described herein was to examine their expression in mouse tissue, in order to lay the framework for comprehensive functional studies using mouse models. METHODS: All RNA variants of Rbm5 and Rbm10 were examined in a range of normal primary mouse tissues. RNA and protein were examined in differentiating C2C12 myoblasts and in denervated and dystonin-deficient mouse skeletal muscle...
April 10, 2016: Gene
https://www.readbyqxmd.com/read/26782095/rna-binding-motif-protein-5-inhibits-the-proliferation-of-cigarette-smoke-transformed-beas-2b-cells-through-cell-cycle-arrest-and-apoptosis
#6
Xue-Jiao Lv, Yan-Wei Du, Yu-Qiu Hao, Zhen-Zhong Su, Lin Zhang, Li-Jing Zhao, Jie Zhang
Cigarette smoking has been shown to be the most significant risk factor for lung cancer. Recent studies have also indicated that RNA-binding motif protein 5 (RBM5) can modulate apoptosis and suppress tumor growth. The present study focused on the role of RBM5 in the regulation of cigarette smoke extract (CSE)-induced transformation of bronchial epithelial cells into the cancerous phenotype and its mechanism of action. Herein, we exposed normal BEAS-2B cells for 8 days to varying concentrations of CSE or dimethylsulfoxide (DMSO), followed by a recovery period of 2 weeks...
April 2016: Oncology Reports
https://www.readbyqxmd.com/read/26712279/nuclear-magnetic-resonance-structure-of-a-novel-globular-domain-in-rbm10-containing-ocre-the-octamer-repeat-sequence-motif
#7
Bryan T Martin, Pedro Serrano, Michael Geralt, Kurt Wüthrich
The OCtamer REpeat (OCRE) has been annotated as a 42-residue sequence motif with 12 tyrosine residues in the spliceosome trans-regulatory elements RBM5 and RBM10 (RBM [RNA-binding motif]), which are known to regulate alternative splicing of Fas and Bcl-x pre-mRNA transcripts. Nuclear magnetic resonance structure determination showed that the RBM10 OCRE sequence motif is part of a 55-residue globular domain containing 16 aromatic amino acids, which consists of an anti-parallel arrangement of six β strands, with the first five strands containing complete or incomplete Tyr triplets...
January 5, 2016: Structure
https://www.readbyqxmd.com/read/26659391/post-transcriptional-regulation-of-rbm5-expression-in-undifferentiated-h9c2-myoblasts
#8
Julie J Loiselle, Sarah J Tessier, Leslie C Sutherland
We previously examined the expression of Rbm5 during myoblast differentiation and found significantly more protein in the early stages of skeletal myoblast differentiation than during the later stages. We decided to determine if this elevated level was necessary for differentiation. Our hypothesis was that if high levels of Rbm5 protein expression were necessary for the initiation of skeletal myoblast differentiation, then inhibition of expression would prevent differentiation. Our long-term objective is to inhibit Rbm5 expression and examine the effect on H9c2 differentiation...
March 2016: In Vitro Cellular & Developmental Biology. Animal
https://www.readbyqxmd.com/read/25934800/signatures-of-accelerated-somatic-evolution-in-gene-promoters-in-multiple-cancer-types
#9
Kyle S Smith, Vinod K Yadav, Brent S Pedersen, Rita Shaknovich, Mark W Geraci, Katherine S Pollard, Subhajyoti De
Cancer-associated somatic mutations outside protein-coding regions remain largely unexplored. Analyses of the TERT locus have indicated that non-coding regulatory mutations can be more frequent than previously suspected and play important roles in oncogenesis. Using a computational method called SASE-hunter, developed here, we identified a novel signature of accelerated somatic evolution (SASE) marked by a significant excess of somatic mutations localized in a genomic locus, and prioritized those loci that carried the signature in multiple cancer patients...
June 23, 2015: Nucleic Acids Research
https://www.readbyqxmd.com/read/25738917/rna-binding-motif-protein-5-negatively-regulates-the-activity-of-wnt-%C3%AE-catenin-signaling-in-cigarette-smoke-induced-alveolar-epithelial-injury
#10
Yu-Qiu Hao, Zhen-Zhong Su, Xue-Jiao Lv, Ping Li, Peng Gao, Chen Wang, Yue Bai, Jie Zhang
Cigarette smoking is closely associated with various respiratory diseases. Oxidants and carcinogens in cigarettes are reported to induce various airway epithelial injuries. However, the underlying mechanisms remain unclear. The aims of the present study were to determine the involvement of RNA-binding motif protein 5 (RBM5) and Wnt/β-catenin signaling in cigarette smoke-induced alveolar epithelial injury, as well as the interaction between both. A549 cells were treated with cigarette smoke extract (CSE). The MTT assay was used to assess the effects of CSE on cell viability...
May 2015: Oncology Reports
https://www.readbyqxmd.com/read/25586139/the-nuclear-splicing-factor-rna-binding-motif-5-promotes-caspase-activation-in-human-neuronal-cells-and-increases-after-traumatic-brain-injury-in-mice
#11
Travis C Jackson, Lina Du, Keri Janesko-Feldman, Vincent A Vagni, Cameron Dezfulian, Samuel M Poloyac, Edwin K Jackson, Robert S B Clark, Patrick M Kochanek
Splicing factors (SFs) coordinate nuclear intron/exon splicing of RNA. Splicing factor disturbances can cause cell death. RNA binding motif 5 (RBM5) and 10 (RBM10) promote apoptosis in cancer cells by activating detrimental alternative splicing of key death/survival genes. The role(s) of RBM5/10 in neurons has not been established. Here, we report that RBM5 knockdown in human neuronal cells decreases caspase activation by staurosporine. In contrast, RBM10 knockdown augments caspase activation. To determine whether brain injury alters RBM signaling, we measured RBM5/10 protein in mouse cortical/hippocampus homogenates after controlled cortical impact (CCI) traumatic brain injury (TBI) plus hemorrhagic shock (CCI+HS)...
April 2015: Journal of Cerebral Blood Flow and Metabolism
https://www.readbyqxmd.com/read/25578565/rbm5-and-p53-expression-after-rat-spinal-cord-injury-implications-for-neuronal-apoptosis
#12
Jinlong Zhang, Zhiming Cui, Guijuan Feng, Guofeng Bao, Guanhua Xu, Yuyu Sun, Lingling Wang, Jiajia Chen, Huricha Jin, Jian Liu, Longfei Yang, Weidong Li
RBM5 (RNA-binding motif protein 5), a nuclear RNA binding protein, is known to trigger apoptosis and induce cell cycle arrest by regulating the activity of the tumor suppressor protein p53. However, its expression and function in spinal cord injury (SCI) are still unknown. To investigate whether RBM5 is involved in central nervous system injury and repair, we performed an acute SCI model in adult rats in this study. Our results showed RBM5 was unregulated significantly after SCI, which was accompanied with an increase in the levels of apoptotic proteins such as p53, Bax, and active caspase-3...
March 2015: International Journal of Biochemistry & Cell Biology
https://www.readbyqxmd.com/read/25441176/lentiviral-vector-mediated-rbm5-overexpression-downregulates-egfr-expression-in-human-non-small-cell-lung-cancer-cells
#13
Zhenzhong Su, Jinzhi Yin, Lijing Zhao, Ranwei Li, Hong Liang, Jie Zhang, Ke Wang
BACKGROUND: RNA binding motif 5 (RBM5) is a tumor suppressor gene that modulates apoptosis through the regulation of alternative splicing of apoptosis-related genes. Our previous studies suggested that RBM5 expression was negatively correlated with the expression of epidermal growth factor receptor (EGFR) in non-small cell lung cancer (NSCLC) tissues. This study was aimed at determining whether RBM5 is able to regulate EGFR expression. METHODS: Both in vitro and in vivo studies were carried out to determine the effect of RBM5 on the expression of EGFR...
2014: World Journal of Surgical Oncology
https://www.readbyqxmd.com/read/25355266/-construction-of-rbm5-vector-establishment-of-stably-transfected-a549-cell-line-and-preliminary-research-on-the-function-of-rbm5-gene
#14
Jian Xiao, Nian Li, Xiaowei Xing, Bixiu He
OBJECTIVE: To establish a stable A549 cell line transfected by RNA binding motif 5 (RBM5) expression vector, and to investigate the effect of RBM5 gene on proliferation of A549 cell line and the expression of DEAH box polypeptide 15 (DHX15). METHODS: The eukaryotic expression vector pcDNA3.1 (+)/RBM5 was constructed by a twostep PCR technique. Then, the recombinant plasmid pcDNA3.1 (+)/RBM5 was verified by DNA sequencing and transfected into the lung adenocarcinoma cell A549...
October 2014: Zhong Nan da Xue Xue Bao. Yi Xue Ban, Journal of Central South University. Medical Sciences
https://www.readbyqxmd.com/read/24811343/fas-antisense-1-lncrna-and-production-of-soluble-versus-membrane-fas-in-b-cell-lymphoma
#15
L Sehgal, R Mathur, F K Braun, J F Wise, Z Berkova, S Neelapu, L W Kwak, F Samaniego
Impaired Fas-mediated apoptosis is associated with poor clinical outcomes and cancer chemoresistance. Soluble Fas receptor (sFas), produced by skipping of exon 6, inhibits apoptosis by sequestering Fas ligand. Serum sFas is associated with poor prognosis of non-Hodgkin's lymphomas. We found that the alternative splicing of Fas in lymphomas is tightly regulated by a long-noncoding RNA corresponding to an antisense transcript of Fas (FAS-AS1). Levels of FAS-AS1 correlate inversely with production of sFas, and FAS-AS1 binding to the RBM5 inhibits RBM5-mediated exon 6 skipping...
December 2014: Leukemia: Official Journal of the Leukemia Society of America, Leukemia Research Fund, U.K
https://www.readbyqxmd.com/read/24530524/rbm10-regulates-alternative-splicing
#16
Akira Inoue, Naoki Yamamoto, Masatsugu Kimura, Koji Nishio, Hideo Yamane, Koichi Nakajima
RBM10, originally called S1-1, is a nuclear RNA-binding protein with domains characteristic of RNA processing proteins. It has been reported that RBM10 constitutes spliceosome complexes and that RBM5, a close homologue of RBM10, regulates alternative splicing of apoptosis-related genes, Fas and cFLIP. In this study, we examined whether RBM10 has a regulatory function in splicing similar to RBM5, and determined that it indeed regulates alternative splicing of Fas and Bcl-x genes. RBM10 promotes exon skipping of Fas pre-mRNA as well as selection of an internal 5'-splice site in Bcl-x pre-mRNA...
March 18, 2014: FEBS Letters
https://www.readbyqxmd.com/read/24486491/the-rna-recognition-motif-domains-of-rbm5-are-required-for-rna-binding-and-cancer-cell-proliferation-inhibition
#17
Lei Zhang, Qing Zhang, Yu Yang, Chuanfang Wu
RBM5 is a known putative tumor suppressor gene that has been shown to function in cell growth inhibition by modulating apoptosis. RBM5 also plays a critical role in alternative splicing as an RNA binding protein. However, it is still unclear which domains of RBM5 are required for RNA binding and related functional activities. We hypothesized the two putative RNA recognition motif (RRM) domains of RBM5 spanning from amino acids 98-178 and 231-315 are essential for RBM5-mediated cell growth inhibition, apoptosis regulation, and RNA binding...
February 14, 2014: Biochemical and Biophysical Research Communications
https://www.readbyqxmd.com/read/24332178/rbm5-6-and-10-differentially-regulate-numb-alternative-splicing-to-control-cancer-cell-proliferation
#18
Elias G Bechara, Endre Sebestyén, Isabella Bernardis, Eduardo Eyras, Juan Valcárcel
RBM5, a regulator of alternative splicing of apoptotic genes, and its highly homologous RBM6 and RBM10 are RNA-binding proteins frequently deleted or mutated in lung cancer. We report that RBM5/6 and RBM10 antagonistically regulate the proliferative capacity of cancer cells and display distinct positional effects in alternative splicing regulation. We identify the Notch pathway regulator NUMB as a key target of these factors in the control of cell proliferation. NUMB alternative splicing, which is frequently altered in lung cancer, can regulate colony and xenograft tumor formation, and its modulation recapitulates or antagonizes the effects of RBM5, 6, and 10 in cell colony formation...
December 12, 2013: Molecular Cell
https://www.readbyqxmd.com/read/24178303/differential-downregulation-of-rbm5-and-rbm10-during-skeletal-and-cardiac-differentiation
#19
Julie J Loiselle, Leslie C Sutherland
RBM5 and RBM10 play an important role in transformed cells. This role includes influencing the alternative splicing and/or expression of factors involved in apoptosis and cell cycle arrest. To date, all apoptosis studies relating to RBM5 and RBM10 have been performed in transformed cell lines, potentially confounding mechanistic interpretation because of the many mutations present in this population. The objective of this study was to identify a physiologically relevant non-transformed system in which to examine the expression of RBM5 and RBM10 for future mechanistic and target identification studies...
April 2014: In Vitro Cellular & Developmental Biology. Animal
https://www.readbyqxmd.com/read/23997114/genome-wide-rnai-high-throughput-screen-identifies-proteins-necessary-for-the-ahr-dependent-induction-of-cyp1a1-by-2-3-7-8-tetrachlorodibenzo-p-dioxin
#20
Parrisa Solaimani, Robert Damoiseaux, Oliver Hankinson
The aryl hydrocarbon receptor (AHR) has a plethora of physiological roles, and upon dysregulation, carcinogenesis can occur. One target gene of AHR encodes the xenobiotic and drug-metabolizing enzyme CYP1A1, which is inducible by the environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) via the AHR. An siRNA library targeted against over 5600 gene candidates in the druggable genome was used to transfect mouse Hepa-1 cells, which were then treated with TCDD, and subsequently assayed for CYP1A1-dependent ethoxyresorufin-o-deethylase (EROD) activity...
November 2013: Toxicological Sciences: An Official Journal of the Society of Toxicology
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