keyword
https://read.qxmd.com/read/38559047/modulation-of-gaba-a-receptor-trafficking-by-wwc2-reveals-class-specific-mechanisms-of-synapse-regulation-by-wwc-family-proteins
#1
Thomas L Dunham, Julia R Wilkerson, Richard C Johnson, Richard L Huganir, Lenora J Volk
WWC2 (WW and C2 domain-containing protein) is implicated in several neurological disorders, however its function in the brain has yet to be determined. Here, we demonstrate that WWC2 interacts with inhibitory but not excitatory postsynaptic scaffolds, consistent with prior proteomic identification of WWC2 as a putative component of the inhibitory postsynaptic density. Using mice lacking WWC2 expression in excitatory forebrain neurons, we show that WWC2 suppresses GABA A R incorporation into the plasma membrane and regulates HAP1 and GRIP1, which form a complex promoting GABA A R recycling to the membrane...
March 12, 2024: bioRxiv
https://read.qxmd.com/read/38490283/dna-methylation-altered-genes-in-the-rat-hippocampal-neurogenic-niche-after-continuous-exposure-to-amorphous-curcumin
#2
JOURNAL ARTICLE
Qian Tang, Ryota Ojiro, Shunsuke Ozawa, Xinyu Zou, Junta Nakahara, Tomohiro Nakao, Mihoko Koyanagi, Meilan Jin, Toshinori Yoshida, Makoto Shibutani
Rat offspring who are exposed to an amorphous formula of curcumin (CUR) from the embryonic stage have anti-anxiety-like behaviors, enhanced fear extinction learning, and increased synaptic plasticity in the hippocampal dentate gyrus (DG). In the present study, we investigated the links between genes with altered methylation status in the neurogenic niche and enhanced neural functions after CUR exposure. We conducted methylation and RNA sequencing analyses of the DG of CUR-exposed rat offspring on day 77 after delivery...
March 13, 2024: Journal of Chemical Neuroanatomy
https://read.qxmd.com/read/38457249/mechanisms-underlying-morphological-and-functional-changes-of-cilia-in-fibroblasts-derived-from-patients-bearing-arl3-t31a-and-arl3-t31a-c118f-mutations
#3
JOURNAL ARTICLE
Xiaoli Zhang, Shun Yao, Lujia Zhang, Lin Yang, Mingzhu Yang, Qingge Guo, Yan Li, Zhongfeng Wang, Bo Lei, Xiuxiu Jin
ARL3 is essential for cilia development, and mutations in ARL3 are closely associated with ciliopathies. In a previous study, we observed distinct phenotypes of retinal dystrophy in patients with heterozygous ARL3T31A and compound heterozygous ARL3T31A/C118F mutations, indicating that different mutation types may exert diverse effects on their functions. Here, we generated transformed immortal fibroblast cells from patients carrying heterozygous ARL3T31A and compound heterozygous ARL3T31A/C118F mutations, and systematically evaluated their cilia morphology and function, which were further validated in ARPE-19 cells...
March 15, 2024: FASEB Journal: Official Publication of the Federation of American Societies for Experimental Biology
https://read.qxmd.com/read/38405750/mechanisms-of-epigenomic-and-functional-convergence-between-glucocorticoid-and-il4-driven-macrophage-programming
#4
Dinesh K Deochand, Marija Dacic, Michael J Bale, Andrew W Daman, Steven Z Josefowicz, David Oliver, Yurii Chinenov, Inez Rogatsky
Macrophages adopt distinct phenotypes in response to environmental cues, with type-2 cytokine interleukin-4 promoting a tissue-repair homeostatic state (M2IL4). Glucocorticoids, widely used anti-inflammatory therapeutics, reportedly impart a similar phenotype (M2GC), but how such disparate pathways may functionally converge is unknown. We show using integrative functional genomics that M2IL4 and M2GC transcriptomes share a striking overlap mirrored by a shift in chromatin landscape in both common and signal-specific gene subsets...
February 18, 2024: bioRxiv
https://read.qxmd.com/read/38400881/unraveling-the-connection-between-hashimoto-s-thyroiditis-and-non-alcoholic-fatty-liver-disease-exploring-the-role-of-cd4-central-memory-t-cells-through-integrated-genetic-approaches
#5
JOURNAL ARTICLE
Dairui Li, Zeji Zhang, Cheng Zhang, Qiannan Guo, Chen Chen, Xinzhi Peng
PURPOSE: Exploring the connection between Hashimoto's thyroiditis (HT) and non-alcoholic fatty liver disease (NAFLD) through integrated genetic approaches. METHODS: We utilized integrated genetic approaches, such as single-cell RNA sequencing (scRNA-seq) data analysis, Mendelian Randomization (MR), colocalization analysis, cell communication, and metabolic analyses, to investigate potential correlations between HT and NAFLD. RESULTS: Through the integrated analysis of scRNA-seq data from individuals with HT, NAFLD, and healthy controls, we observed an upregulation in the proportion of CD4+ central memory (CD4+ CM) T cells among T cells in both diseases...
February 24, 2024: Endocrine
https://read.qxmd.com/read/38187763/conformational-states-of-the-microtubule-nucleator-the-%C3%AE-tubulin-ring-complex
#6
Brianna Romer, Sophie M Travis, Brian P Mahon, Collin T McManus, Philip D Jeffrey, Nicolas Coudray, Rishwanth Raghu, Michael J Rale, Ellen D Zhong, Gira Bhabha, Sabine Petry
Microtubules (MTs) perform essential functions in the cell, and it is critical that they are made at the correct cellular location and cell cycle stage. This nucleation process is catalyzed by the γ-tubulin ring complex (γ-TuRC), a cone-shaped protein complex composed of over 30 subunits. Despite recent insight into the structure of vertebrate γ-TuRC, which shows that its diameter is wider than that of a MT, and that it exhibits little of the symmetry expected for an ideal MT template, the question of how γ-TuRC achieves MT nucleation remains open...
December 21, 2023: bioRxiv
https://read.qxmd.com/read/38152067/prefrontal-cortex-glutamatergic-adaptations-in-a-mouse-model-of-alcohol-use-disorder
#7
JOURNAL ARTICLE
Mahum T Siddiqi, Dhruba Podder, Amanda R Pahng, Alexandria C Athanason, Tali Nadav, Chelsea Cates-Gatto, Max Kreifeldt, Candice Contet, Amanda J Roberts, Scott Edwards, Marisa Roberto, Florence P Varodayan
Alcohol use disorder (AUD) produces cognitive deficits, indicating a shift in prefrontal cortex (PFC) function. PFC glutamate neurotransmission is mostly mediated by α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid-type ionotropic receptors (AMPARs); however preclinical studies have mostly focused on other receptor subtypes. Here we examined the impact of early withdrawal from chronic ethanol on AMPAR function in the mouse medial PFC (mPFC). Dependent male C57BL/6J mice were generated using the chronic intermittent ethanol vapor-two bottle choice (CIE-2BC) paradigm...
December 15, 2023: Addict Neurosci
https://read.qxmd.com/read/38142716/hippocampal-proteomic-changes-in-high-fat-diet-induced-obese-mice-associated-with-memory-decline
#8
JOURNAL ARTICLE
Ping Lu, Cun-Xiu Gao, Fei-Jian Luo, Yu-Ting Huang, Mei-Mei Gao, Yue-Sheng Long
Substantial evidences suggest that chronic consumption of high-fat diets (HFDs) can lead to obesity, abnormal metabolism, as well as cognitive impairment. Molecular and cellular changes regarding hippocampal dysfunctions have been identified in multiple HFD animal models. Therefore, in-depth identification of expression changes of hippocampal proteins is critical for understanding the mechanism of HFD-induced cognitive deficits. In this study, we fed 3-week old male mice with HFD for 3 months to generate obese mice who exhibit systemic metabolic abnormality and learning and memory decline...
December 22, 2023: Journal of Nutritional Biochemistry
https://read.qxmd.com/read/38113192/integrated-studies-on-male-reproductive-toxicity-of-bis-2-ethylhexyl-tetrabromophthalate-in-silico-in-vitro-ex-vivo-and-in-vivo
#9
JOURNAL ARTICLE
Kaiyu Fu, Jianghuan Hua, Yindan Zhang, Mingpu Du, Jian Han, Na Li, Qiangwei Wang, Lihua Yang, Ruiwen Li, Bingsheng Zhou
Bis(2-ethylhexyl)tetrabromophthalate (TBPH) has been widely detected in the environment and organisms; thus, its toxic effects on male reproduction were systematically studied. First, we found that TBPH can stably bind to the androgen receptor (AR) based on in silico molecular docking results and observed an antagonistic activity, but not agonistic activity, on the AR signaling pathway using a constructed AR-GRIP1 yeast assay. Subsequently, we validated the adverse effects on male germ cells by observing inhibited androgen production and proliferation in Leydig cells upon in vitro exposure and affected general motility and motive tracks of zebrafish sperm upon ex vivo exposure...
December 19, 2023: Environmental Science & Technology
https://read.qxmd.com/read/38075686/a-genome-wide-association-study-reveals-novel-snp-markers-associated-with-resilience-traits-in-two-mediterranean-dairy-sheep-breeds
#10
JOURNAL ARTICLE
Angeliki Argyriadou, Sofia Michailidou, Sotiria Vouraki, Valentina Tsartsianidou, Alexandros Triantafyllidis, Athanasios Gelasakis, Georgios Banos, Georgios Arsenos
Genetic selection for higher productivity increased dairy sheep susceptibility to diseases and environmental stressors, challenging their health and welfare status and production efficiency. Improving resilience to such stressors can enhance their ability to face these challenges without compromising productivity. Our objective was to estimate genomic heritability and perform genome-wide association studies (GWAS) to detect SNPs and candidate genes associated with three proxy traits for resilience (milk somatic cell count-SCC, lactation persistency-LP, body condition score-BCS) of Chios and Frizarta dairy ewes...
2023: Frontiers in Genetics
https://read.qxmd.com/read/37754879/fabrication-and-optimization-of-3d-printed-silica-scaffolds-for-neural-precursor-cell-cultivation
#11
JOURNAL ARTICLE
Georgia Kastrinaki, Eleftheria-Maria Pechlivani, Ioannis Gkekas, Nikolaos Kladovasilakis, Evdokia Gkagkari, Spyros Petrakis, Akrivi Asimakopoulou
The latest developments in tissue engineering scaffolds have sparked a growing interest in the creation of controlled 3D cellular structures that emulate the intricate biophysical and biochemical elements found within versatile in vivo microenvironments. The objective of this study was to 3D-print a monolithic silica scaffold specifically designed for the cultivation of neural precursor cells. Initially, a preliminary investigation was conducted to identify the critical parameters pertaining to calcination...
September 9, 2023: Journal of Functional Biomaterials
https://read.qxmd.com/read/37686244/the-influence-of-race-ethnicity-on-the-transcriptomic-landscape-of-uterine-fibroids
#12
JOURNAL ARTICLE
Tsai-Der Chuang, Nhu Ton, Shawn Rysling, Derek Quintanilla, Drake Boos, Jianjun Gao, Hayden McSwiggin, Wei Yan, Omid Khorram
The objective of this study was to determine if the aberrant expression of select genes could form the basis for the racial disparity in fibroid characteristics. The next-generation RNA sequencing results were analyzed as fold change [leiomyomas/paired myometrium, also known as differential expression (DF)], comparing specimens from White (n = 7) and Black (n = 12) patients. The analysis indicated that 95 genes were minimally changed in tumors from White (DF ≈ 1) but were significantly altered by more than 1...
August 30, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37671094/early-diagnosis-for-the-onset-of-peri-implantitis-based-on-artificial-neural-network
#13
JOURNAL ARTICLE
Wanting Fan, Jianming Tang, Huixia Xu, Xilin Huang, Donglei Wu, Zheng Zhang
The aim of this study is to construct an artificial neural network (ANN) based on bioinformatic analysis to enable early diagnosis of peri-implantitis (PI). PI-related datasets were retrieved from the Gene Expression Omnibus database. Differentially expressed genes (DEGs) and functional enrichment analyses were performed between PI and the control group. Furthermore, the infiltration of 22 immune cells in PI was analyzed using CIBERSORT. Hub genes were identified with random forest (RF) classification. The ANN model was then constructed for early diagnosis of PI...
2023: Open Life Sciences
https://read.qxmd.com/read/37408241/role-of-coactivator-associated-arginine-methyltransferase-1-carm1-in-the-regulation-of-the-biological-function-of-1-25-dihydroxyvitamin-d-3
#14
JOURNAL ARTICLE
Leila J Mady, Yan Zhong, Puneet Dhawan, Sylvia Christakos
1,25-Dihydroxyvitamin D3 (1,25(OH)2 D3 ), the hormonally active form of vitamin D, activates the nuclear vitamin D receptor (VDR) to mediate the transcription of target genes involved in calcium homeostasis as well as in non-classical 1,25(OH)2 D3 actions. In this study, CARM1, an arginine methyltransferase, was found to mediate coactivator synergy in the presence of GRIP1 (a primary coactivator) and to cooperate with G9a, a lysine methyltransferase, in 1,25(OH)2 D3 induced transcription of Cyp24a1 (the gene involved in the metabolic inactivation of 1,25(OH)2 D3 )...
May 17, 2023: Cells
https://read.qxmd.com/read/36865910/kaixin-san-improves-a%C3%AE-induced-synaptic-plasticity-inhibition-by-affecting-the-expression-of-regulation-proteins-associated-with-postsynaptic-ampar-expression
#15
JOURNAL ARTICLE
Bo Zhang, Meng-Lu Wang, Shu-Ming Huang, Yu Cui, Yan Li
Objective: To explore the mechanism underlying Kaixin-San (KXS) regulation of postsynaptic AMPA receptor (AMPAR) expression to mitigate toxic effects of the amyloid-β protein (Aβ). Methods: An animal model was established via intracerebroventricular injection of Aβ1-42. The Morris water maze test was conducted to evaluate learning and memory, while electrophysiological recording was conducted to assess the hippocampal long-term potentiation (LTP). Western blotting was used to detect expression levels of the hippocampal postsynaptic AMPAR and its accessory proteins...
2023: Frontiers in Pharmacology
https://read.qxmd.com/read/36406750/glutamate-receptor-interacting-protein-1-in-d1-and-d2-dopamine-receptor-expressing-medium-spiny-neurons-differentially-regulates-cocaine-acquisition-reinstatement-and-associated-spine-plasticity
#16
JOURNAL ARTICLE
He Chen, Limei Chen, Zhirong Yuan, Jiajie Yuan, Yitong Li, Yuesi Xu, Jieyi Wu, Lu Zhang, Guohua Wang, Juan Li
BACKGROUND: The nucleus accumbens (NAc) is involved in the expression of cocaine addictive phenotypes, including acquisition, extinction, and reinstatement. In the NAc, D1-medium spiny neurons (MSNs) encode cocaine reward, whereas D2-MSNs encode aversive responses in drug addiction. Glutamate receptor-interacting protein 1 (GRIP1) is known to be associated with cocaine addiction, but the role of GRIP1 in D1-MSNs and D2-MSNs of the NAc in cocaine acquisition and reinstatement remains unknown...
2022: Frontiers in Cellular Neuroscience
https://read.qxmd.com/read/35863680/glutamate-receptor-interacting-protein-1-in-the-dorsal-ca1-drives-ampa-receptor-endocytosis-and-exocytosis-bidirectionally-and-mediates-forgetting-exploratory-and-anxiety-like-behavior
#17
JOURNAL ARTICLE
Guohua Wang, Limei Chen, He Chen, Yitong Li, Yuesi Xu, Yanli Xing, Lu Zhang, Juan Li
Endocytosis of GluA2-containing alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptors (AMPARs) in CA1 of the hippocampus regulates forgetting; deficits in forgetting nociceptive memory can induce serious stress disorders. As a transporter of GluA2-containing AMPAR, the functions of glutamate receptor interacting protein 1 (GRIP1) in forgetting and possible stress responses remain unclear. Lentivirus-mediated interference of GRIP1 expression or function in the dorsal CA1 of the hippocampus indicated that GRIP1 overexpression enhanced spatial memory, impaired forgetting in a Barnes maze, and induced anxiety-like behavior in the open field and elevated plus-maze test...
July 18, 2022: Neuroscience
https://read.qxmd.com/read/35807406/a-class-i-hdac-inhibitor-rescues-synaptic-damage-and-neuron-loss-in-app-transfected-cells-and-app-ps1-mice-through-the-grip1-ampa-pathway
#18
JOURNAL ARTICLE
Ying Han, Le Chen, Jingyun Liu, Jie Chen, Chunyang Wang, Yu Guo, Xuebin Yu, Chenghong Zhang, Haiying Chu, Haiying Ma
As a neurodegenerative disease, Alzheimer's disease (AD) seriously affects the health of older people. Changes in synapses occur first over the course of the disease, perhaps even before the formation of Aβ plaques. Histone deacetylase (HDAC) mediates the damage of Aβ oligomers to dendritic spines. Therefore, we examined the relationship between HDAC activity and synaptic defects using an HDAC inhibitor (HDACI), BG45, in the human neuroblastoma SH-SY5Y cell line with stable overexpression of Swedish mutant APP (APPsw) and in APP/PS1 transgenic mice during this study...
June 29, 2022: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://read.qxmd.com/read/35453532/-mycobacterium-tuberculosis-affects-protein-and-lipid-content-of-circulating-exosomes-in-infected-patients-depending-on-tuberculosis-disease-state
#19
JOURNAL ARTICLE
Fantahun Biadglegne, Johannes R Schmidt, Kathrin M Engel, Jörg Lehmann, Robert T Lehmann, Anja Reinert, Brigitte König, Jürgen Schiller, Stefan Kalkhof, Ulrich Sack
Tuberculosis (TB), which is caused by the bacterium Mycobacterium tuberculosis ( Mtb ), is still one of the deadliest infectious diseases. Understanding how the host and pathogen interact in active TB will have a significant impact on global TB control efforts. Exosomes are increasingly recognized as a means of cell-to-cell contact and exchange of soluble mediators. In the case of TB, exosomes are released from the bacillus and infected cells. In the present study, a comprehensive lipidomics and proteomics analysis of size exclusion chromatography-isolated plasma-derived exosomes from patients with TB lymphadenitis (TBL) and treated as well as untreated pulmonary TB (PTB) was performed to elucidate the possibility to utilize exosomes in diagnostics and knowledge building...
March 27, 2022: Biomedicines
https://read.qxmd.com/read/35441810/identification-of-a-combined-apoptosis-and-hypoxia-gene-signature-for-predicting-prognosis-and-immune-infiltration-in-breast-cancer
#20
JOURNAL ARTICLE
Xueting Ren, Hanxiao Cui, Jianhua Wu, Ruina Zhou, Nan Wang, Dandan Liu, Xin Xie, Hao Zhang, Di Liu, Xiaobin Ma, Chengxue Dang, Huafeng Kang, Shuai Lin
BACKGROUND: Breast cancer (BC) is the most common malignant tumor worldwide. Apoptosis and hypoxia are involved in the progression of BC, but reliable biomarkers for these have not been developed. We hope to explore a gene signature that combined apoptosis and hypoxia-related genes (AHGs) to predict BC prognosis and immune infiltration. METHODS: We collected the mRNA expression profiles and clinical data information of BC patients from The Cancer Genome Atlas database...
April 20, 2022: Cancer Medicine
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