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https://www.readbyqxmd.com/read/27911255/euzebyella-marina-sp-nov-isolated-from-seawater
#1
Yan-Jiao Zhang, Jia-Rui Zhao, Xi-Ying Zhang, Guo-Zhong Chen, Ming-Yang Zhou, Xu-Hua Mo, Hai-Lun He, Shiyong Chen
A Gram-negative, aerobic, yellow-pigmented, non-flagellated, non-gliding, oxidase- and catalase- positive bacterium, designated CY01T, was isolated from seawater of the Yellow Sea. Strain CY01T grew at 15-37 C (optimum, 30 C), at pH 5-8 (optimum, 6.5-7.5) and with 0.5-12 % (w/v) NaCl (optimum, 0.5-3.5 %). It could not produce flexirubin-type pigment or reduce nitrate to nitrite. Strain CY01T showed the highest 16S rRNA gene sequence similarity to type strain of Euzebyella saccharophila (97.0 %) and clustered tightly with the Euzebyella species in the phylogenetic trees based on the 16S rRNA gene sequences...
December 1, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27910905/magnitude-and-pattern-of-arctic-warming-governed-by-the-seasonality-of-radiative-forcing
#2
R Bintanja, F Krikken
Observed and projected climate warming is strongest in the Arctic regions, peaking in autumn/winter. Attempts to explain this feature have focused primarily on identifying the associated climate feedbacks, particularly the ice-albedo and lapse-rate feedbacks. Here we use a state-of-the-art global climate model in idealized seasonal forcing simulations to show that Arctic warming (especially in winter) and sea ice decline are particularly sensitive to radiative forcing in spring, during which the energy is effectively 'absorbed' by the ocean (through sea ice melt and ocean warming, amplified by the ice-albedo feedback) and consequently released to the lower atmosphere in autumn and winter, mainly along the sea ice periphery...
December 2, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27910875/an-integrated-modelling-framework-from-cells-to-organism-based-on-a-cohort-of-digital-embryos
#3
Paul Villoutreix, Julien Delile, Barbara Rizzi, Louise Duloquin, Thierry Savy, Paul Bourgine, René Doursat, Nadine Peyriéras
We conducted a quantitative comparison of developing sea urchin embryos based on the analysis of five digital specimens obtained by automatic processing of in toto 3D+ time image data. These measurements served the reconstruction of a prototypical cell lineage tree able to predict the spatiotemporal cellular organisation of a normal sea urchin blastula. The reconstruction was achieved by designing and tuning a multi-level probabilistic model that reproduced embryo-level dynamics from a small number of statistical parameters characterising cell proliferation, cell surface area and cell volume evolution along the cell lineage...
December 2, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27910365/impulse-responses-of-visible-phototubes-used-in-national-ignition-facility-neutron-time-of-flight-diagnostics
#4
P S Datte, M Eckart, A S Moore, W Thompson, G Vergel de Dios
Neutron-induced visible scintillation in neutron time of flight (NToF) diagnostics at the National Ignition Facility (NIF) is measured with 40 mm single stage micro-channel plate photomultipliers and a 40 mm vacuum photodiode, outside the neutron line of sight. In NIF experiments with 14 MeV neutron yields above Y > 10 × 10(15) these tubes are configured to deliver of order 1 nC of charge in the nominally 5 ns NToF into a 50 Ω load. We have examined a number of 40 mm tubes manufactured by Photek Ltd. of St...
November 2016: Review of Scientific Instruments
https://www.readbyqxmd.com/read/27909749/diversity-of-total-bacterial-communities-and-chemoautotrophic-populations-in-sulfur-rich-sediments-of-shallow-water-hydrothermal-vents-off-kueishan-island-taiwan
#5
Li Wang, Man Kit Cheung, Rulong Liu, Chong Kim Wong, Hoi Shan Kwan, Jiang-Shiou Hwang
Shallow-water hydrothermal vents (HTVs) are an ecologically important habitat with a geographic origin similar to that of deep-sea HTVs. Studies on shallow-water HTVs have not only facilitated understanding of the influences of vents on local ecosystems but also helped to extend the knowledge on deep-sea vents. In this study, the diversity of bacterial communities in the sediments of shallow-water HTVs off Kueishan Island, Taiwan, was investigated by examining the 16S ribosomal RNA gene as well as key functional genes involved in chemoautotrophic carbon fixation (aclB, cbbL and cbbM)...
December 1, 2016: Microbial Ecology
https://www.readbyqxmd.com/read/27909654/bone-substitutes-and-expanders-in-spine-surgery-a-review-of-their-fusion-efficacies
#6
Abhijeet Kadam, Paul W Millhouse, Christopher K Kepler, Kris E Radcliff, Michael G Fehlings, Michael E Janssen, Rick C Sasso, James J Benedict, Alexander R Vaccaro
STUDY DESIGN: A narrative review of literature. OBJECTIVE: This manuscript intends to provide a review of clinically relevant bone substitutes and bone expanders for spinal surgery in terms of efficacy and associated clinical outcomes, as reported in contemporary spine literature. SUMMARY OF BACKGROUND DATA: Ever since the introduction of allograft as a substitute for autologous bone in spinal surgery, a sea of literature has surfaced, evaluating both established and newly emerging fusion alternatives...
2016: International Journal of Spine Surgery
https://www.readbyqxmd.com/read/27908079/using-line-acceleration-to-measure-false-killer-whale-pseudorca-crassidens-click-and-whistle-source-levels-during-pelagic-longline-depredation
#7
Aaron Thode, Lauren Wild, Janice Straley, Dustin Barnes, Ali Bayless, Victoria O'Connell, Erin Oleson, Jit Sarkar, Dan Falvey, Linda Behnken, Sean Martin
False killer whales (Pseudorca crassidens) depredate pelagic longlines in offshore Hawaiian waters. On January 28, 2015 a depredation event was recorded 14 m from an integrated GoPro camera, hydrophone, and accelerometer, revealing that false killer whales depredate bait and generate clicks and whistles under good visibility conditions. The act of plucking bait off a hook generated a distinctive 15 Hz line vibration. Two similar line vibrations detected at earlier times permitted the animal's range and thus signal source levels to be estimated over a 25-min window...
November 2016: Journal of the Acoustical Society of America
https://www.readbyqxmd.com/read/27908077/tropical-littoral-ambient-noise-probability-density-function-model-based-on-sea-surface-temperature
#8
Piyush Asolkar, Arnab Das, Suhas Gajre, Yashwant Joshi
Ambient noise variability in tropical shallow water presents a critical challenge for sonar designers and operators due to site-specific sea surface fluctuations. Sea surface temperature (SST) is a direct measure of energy balance defining the local climate of the region and hence ambient noise characteristics. In this work, an ambient noise probability density function (pdf) model for a spectral band of 3-10 kHz has been designed based on the statistical distribution of SST and validated using real field data...
November 2016: Journal of the Acoustical Society of America
https://www.readbyqxmd.com/read/27908051/internal-tides-and-deep-diel-fades-in-acoustic-intensity
#9
Andrew W White, Frank S Henyey, Rex K Andrew, James A Mercer, Peter F Worcester, Matthew A Dzieciuch, John A Colosi
A mechanism is presented by which the observed acoustic intensity is made to vary due to changes in the acoustic path that are caused by internal-tide vertical fluid displacements. The position in range and depth of large-scale caustic structure is determined by the background sound-speed profile. Internal tides cause a deformation of the background profile, changing the positions of the caustic structures-which can introduce intensity changes at a distant receiver. Gradual fades in the acoustic intensity occurring over timescales similar to those of the tides were measured during a low-frequency (284-Hz) acoustic scattering experiment in the Philippine Sea in 2009 [White et al...
November 2016: Journal of the Acoustical Society of America
https://www.readbyqxmd.com/read/27907891/analysis-of-translation-using-polysome-profiling
#10
Héloïse Chassé, Sandrine Boulben, Vlad Costache, Patrick Cormier, Julia Morales
During the past decade, there has been growing interest in the role of translational regulation of gene expression in many organisms. Polysome profiling has been developed to infer the translational status of a specific mRNA species or to analyze the translatome, i.e. the subset of mRNAs actively translated in a cell. Polysome profiling is especially suitable for emergent model organisms for which genomic data are limited. In this paper, we describe an optimized protocol for the purification of sea urchin polysomes and highlight the critical steps involved in polysome purification...
October 7, 2016: Nucleic Acids Research
https://www.readbyqxmd.com/read/27907193/phylogenetic-lineages-and-postglacial-dispersal-dynamics-characterize-the-genetic-structure-of-the-tick-ixodes-ricinus-in-northwest-europe
#11
Knut H Røed, Kjersti S Kvie, Gunnar Hasle, Lucy Gilbert, Hans Petter Leinaas
Dispersal and gene flow are important mechanisms affecting the dynamics of vectors and their pathogens. Here, patterns of genetic diversity were analyzed in many North European populations of the tick, Ixodes ricinus. Population sites were selected within and between areas separated by geographical barriers in order to evaluate the importance of tick transportation by birds in producing genetic connectivity across open sea and mountain ranges. The phylogenetic analyses of the mitochondrial control region and the cytochrome b gene revealed two distinct clades with supported sub-clades, with three genetic lineages: GB and WNo associated with Great Britain and western Norway respectively, and Eu with a wider distribution across continental Europe in agreement with much lower efficiency of tick dispersal by birds than by large mammals...
2016: PloS One
https://www.readbyqxmd.com/read/27907100/patterns-of-fish-connectivity-between-a-marine-protected-area-and-surrounding-fished-areas
#12
Rita Sahyoun, Paolo Guidetti, Antonio Di Franco, Serge Planes
Patterns of connectivity and self-recruitment are recognized as key factors shaping the dynamics of marine populations. Connectivity is also essential for maintaining and restoring natural ecological processes with genetic diversity contributing to the adaptation and persistence of any species in the face of global disturbances. Estimates of connectivity are crucial to inform the design of both marine protected areas (MPAs) and MPA networks. Among several approaches, genetic structure is frequently used as a proxy for patterns of connectivity...
2016: PloS One
https://www.readbyqxmd.com/read/27906593/does-swimming-at-a-moderate-altitude-favor-a-lower-oxidative-stress-in-an-intensity-dependent-manner-role-of-nonenzymatic-antioxidants
#13
Rafael A Casuso, Jerónimo Aragón-Vela, Gracia López-Contreras, Silvana N Gomes, Cristina Casals, Yaira Barranco-Ruiz, Jordi J Mercadé, Jesus R Huertas
Casuso, Rafael A., Jerónimo Aragón-Vela, Gracia López-Contreras, Silvana N. Gomes, Cristina Casals, Yaira Barranco-Ruiz, Jordi J. Mercadé, and Jesus R. Huertas. Does swimming at a moderate altitude favor a lower oxidative stress in an intensity-dependent manner? Role of nonenzymatic antioxidants. High-Alt Med Biol. 00:000-000, 2016-we aimed to describe oxidative damage and enzymatic and nonenzymatic antioxidant responses to swimming at different intensities in hypoxia. We recruited 12 highly experienced swimmers who have been involved in competitive swimming for at least 9 years...
December 1, 2016: High Altitude Medicine & Biology
https://www.readbyqxmd.com/read/27906515/development-evolving-the-origins-and-meanings-of-instinct
#14
REVIEW
Mark S Blumberg
How do migratory birds, herding dogs, and navigating sea turtles do the amazing things that they do? For hundreds of years, scientists and philosophers have struggled over possible explanations. In time, one word came to dominate the discussion: instinct. It became the catch-all explanation for those adaptive and complex abilities that do not obviously result from learning or experience. Today, various animals are said to possess a survival instinct, migratory instinct, herding instinct, maternal instinct, or language instinct...
December 1, 2016: Wiley Interdisciplinary Reviews. Cognitive Science
https://www.readbyqxmd.com/read/27905668/subconjunctival-antimicrobial-poloxamer-gel-for-treatment-of-corneal-ulceration-in-stranded-california-sea-lions-zalophus-californianus
#15
Claire A Simeone, Carmen M H Colitz, Kathleen M Colegrove, Cara L Field, Carlos Rios, Heather L Chandler, Shawn P Johnson
OBJECTIVE: Corneal ulcers are commonly encountered in pinnipeds. Prolonged oral antibiotics and topical ophthalmic solutions may not be practical to administer, and novel treatment techniques are desired. Thermodynamic gels are a potential solution because they hold antimicrobials at the site of injection, slowly releasing drug. This study investigated the clinical efficacy of antibiotic-impregnated poloxamer gel in management of corneal ulceration. ANIMAL STUDIED: Twenty-six California sea lions undergoing rehabilitation at The Marine Mammal Center...
December 1, 2016: Veterinary Ophthalmology
https://www.readbyqxmd.com/read/27905559/sailfish-migrations-connect-productive-coastal-areas-in-the-west-atlantic-ocean
#16
Chi Hin Lam, Benjamin Galuardi, Anthony Mendillo, Emily Chandler, Molly E Lutcavage
Isla Mujeres, Mexico is home to one of the most well-known aggregations of sailfish. Despite its fisheries prominence, little is known about this sailfish assemblage, or its relationship to other aggregation sites in the western Atlantic. In January 2012, April 2013 and 2014, we deployed 34 popup satellite archival tags on sailfish in order to study their behavior, population connectivity and biophysical interactions. Sailfish were monitored for up to one year, and displayed (1) predominantly shelf associated activity (2) occupancy of the Yucatán Current near Isla Mujeres for up to five months and (3) subsequent dispersals from the Yucatán to productive coastal areas in the Gulf of Mexico, the Caribbean Sea and along the South American coast...
December 1, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27905514/seagrass-posidonia-oceanica-seedlings-in-a-high-co2-world-from-physiology-to-herbivory
#17
Gema Hernán, Laura Ramajo, Lorena Basso, Antonio Delgado, Jorge Terrados, Carlos M Duarte, Fiona Tomas
Under future increased CO2 concentrations, seagrasses are predicted to perform better as a result of increased photosynthesis, but the effects in carbon balance and growth are unclear and remain unexplored for early life stages such as seedlings, which allow plant dispersal and provide the potential for adaptation under changing environmental conditions. Furthermore, the outcome of the concomitant biochemical changes in plant-herbivore interactions has been poorly studied, yet may have important implications in plant communities...
December 1, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27905393/nitrous-oxide-as-a-function-of-oxygen-and-archaeal-gene-abundance-in-the-north-pacific
#18
Mark Trimmer, Panagiota-Myrsini Chronopoulou, Susanna T Maanoja, Robert C Upstill-Goddard, Vassilis Kitidis, Kevin J Purdy
Oceanic oxygen minimum zones are strong sources of the potent greenhouse gas N2O but its microbial source is unclear. We characterized an exponential response in N2O production to decreasing oxygen between 1 and 30 μmol O2 l(-1) within and below the oxycline using (15)NO2(-), a relationship that held along a 550 km offshore transect in the North Pacific. Differences in the overall magnitude of N2O production were accounted for by archaeal functional gene abundance. A one-dimensional (1D) model, parameterized with our experimentally derived exponential terms, accurately reproduces N2O profiles in the top 350 m of water column and, together with a strong (45)N2O signature indicated neither canonical nor nitrifier-denitrification production while statistical modelling supported production by archaea, possibly via hybrid N2O formation...
December 1, 2016: Nature Communications
https://www.readbyqxmd.com/read/27904927/effects-of-tin-on-enzyme-activity-in-holothuria-grisea-echinodermata-holothuroidea
#19
Tatiana Miura Pereira, Lívia Pôncio Mattar, Edgar Rocha Pereira, Julia Merçon, Ary Gomes da Silva, Zilma Maria Almeida Cruz
This study evaluated the effect of tin exposure on enzyme activity in the sea cucumber (Holothuria grisea Selenka, 1867). After exposure to 0 (control), 0.04, 0.08, or 0.12 mg L(-1) tin, we tested the activities of total cholinesterase in longitudinal muscles, acid phosphatase in gonads and the respiratory tree, as well as alkaline phosphatase in the intestines during a 96-h bioassay. Regression analyses showed that all enzyme activities declined with increasing tin concentrations, except for acid phosphatase in the respiratory tree, which were similarly, inhibited at all tin concentrations...
November 30, 2016: Bulletin of Environmental Contamination and Toxicology
https://www.readbyqxmd.com/read/27903870/sea-level-driven-glacial-age-refugia-and-post-glacial-mixing-on-subtropical-coasts-a-palaeohabitat-and-genetic-study
#20
Greer A Dolby, Ryan Hechinger, Ryan A Ellingson, Lloyd T Findley, Julio Lorda, David K Jacobs
Using a novel combination of palaeohabitat modelling and genetic mixture analyses, we identify and assess a sea-level-driven recolonization process following the Last Glacial Maximum (LGM). Our palaeohabitat modelling reveals dramatic changes in estuarine habitat distribution along the coast of California (USA) and Baja California (Mexico). At the LGM (approx. 20 kya), when sea level was approximately 130 m lower, the palaeo-shoreline was too steep for tidal estuarine habitat formation, eliminating this habitat type from regions where it is currently most abundant, and limiting such estuaries to a northern and a southern refugium separated by 1000 km...
November 30, 2016: Proceedings. Biological Sciences
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