keyword
https://read.qxmd.com/read/36272083/navigation-and-use-of-custom-tracks-within-the-axolotl-genome-browser
#21
JOURNAL ARTICLE
Sergej Nowoshilow, Elly M Tanaka
The availability of the chromosome-scale axolotl genome sequences has made it possible to explore genome evolution, perform cross-species comparisons, and use additional sequencing data to analyze both genome-wide features and individual genes. Here, we will focus on the UCSC genome browser and demonstrate in a step-by-step manner how to use it to integrate different data to approach a broad question of the Fgf8 locus evolution and analyze the neighborhood of a gene that was reported missing in axolotl - Pax3...
2023: Methods in Molecular Biology
https://read.qxmd.com/read/36265118/molecular-characterization-of-circulating-tumor-dna-in-pediatric-rhabdomyosarcoma-a-feasibility-study
#22
JOURNAL ARTICLE
Olivia Ruhen, Nathalie S M Lak, Janine Stutterheim, Sara G Danielli, Mathieu Chicard, Yasmine Iddir, Alexandra Saint-Charles, Virginia Di Paolo, Lucia Tombolan, Susanne A Gatz, Ewa Aladowicz, Paula Proszek, Sabri Jamal, Reda Stankunaite, Deborah Hughes, Paul Carter, Elisa Izquierdo, Ajla Wasti, Julia C Chisholm, Sally L George, Erika Pace, Louis Chesler, Isabelle Aerts, Gaelle Pierron, Sakina Zaidi, Olivier Delattre, Didier Surdez, Anna Kelsey, Michael Hubank, Paolo Bonvini, Gianni Bisogno, Angela Di Giannatale, Gudrun Schleiermacher, Beat W Schäfer, Godelieve A M Tytgat, Janet Shipley
PURPOSE: Rhabdomyosarcomas (RMS) are rare neoplasms affecting children and young adults. Efforts to improve patient survival have been undermined by a lack of suitable disease markers. Plasma circulating tumor DNA (ctDNA) has shown promise as a potential minimally invasive biomarker and monitoring tool in other cancers; however, it remains underexplored in RMS. We aimed to determine the feasibility of identifying and quantifying ctDNA in plasma as a marker of disease burden and/or treatment response using blood samples from RMS mouse models and patients...
October 2022: JCO Precision Oncology
https://read.qxmd.com/read/36251225/the-regenerative-potential-of-pax3-pax7-on-skeletal-muscle-injury
#23
REVIEW
Muhamad Azhar, Bantari Wisynu Kusuma Wardhani, Editha Renesteen
BACKGROUND: Skeletal muscle mishaps are the most well-known incidents in society, especially among athletes and the military population. From the various urgency, this accident needs to be cured more quickly. However, the current treatment still has some shortcomings and is less effective. In this case, Paired box 3 and Paired box 7 (Pax3/Pax7) proteins that induce stem cells could potentially be an alternative treatment for skeletal muscle injuries. This paper aimed to analyse the potential treatment of Pax3/Pax7 proteins inducing the stem cell for skeletal muscle injuries...
October 17, 2022: Journal, Genetic Engineering & Biotechnology
https://read.qxmd.com/read/36178582/expression-patterns-and-correlation-analyses-of-muscle-specific-genes-in-the-process-of-sheep-myoblast-differentiation
#24
JOURNAL ARTICLE
Hejie Wang, Minmin Dou, Jun Li, Peng Cao, Junling Li, Tianyan Guo, Dipeng Zhao, Ajab Khan, Yingliang Li, Baojun Li, Jian Qin, Rong Du
The purpose of this study was to establish a system for the isolation, culture, and differentiation of sheep myoblasts, and to explore the expression patterns as well as mutual relationships of muscle-specific genes. Sheep fetal myoblasts (SFMs) were isolated by two-step enzymatic digestion, purified by differential adhesion and identified using immunofluorescence techniques. Two percent horse serum was used to induce differentiation in SFMs. Real-time quantitative and Western blot analyses were respectively used to detect the mRNA and protein expressions of muscle-specific genes including MyoD, MyoG, Myf5, Myf6, PAX3, PAX7, myomaker, desmin, MYH1, MYH2, MYH4, MYH7, and MSTN during the differentiation of SFMs...
September 30, 2022: In Vitro Cellular & Developmental Biology. Animal
https://read.qxmd.com/read/36172287/pax3-7-regulates-neural-tube-closure-and-patterning-in-a-non-vertebrate-chordate
#25
JOURNAL ARTICLE
Kwantae Kim, Jameson Orvis, Alberto Stolfi
Pax3/7 factors play numerous roles in the development of the dorsal nervous system of vertebrates. From specifying neural crest at the neural plate borders, to regulating neural tube closure and patterning of the resulting neural tube. However, it is unclear which of these roles are conserved in non-vertebrate chordates. Here we investigate the expression and function of Pax3/7 in the model tunicate Ciona. Pax3/7 is expressed in neural plate border cells during neurulation, and in central nervous system progenitors shortly after neural tube closure...
2022: Frontiers in Cell and Developmental Biology
https://read.qxmd.com/read/36044855/the-rna-helicase-ddx5-cooperates-with-ehmt2-to-sustain-alveolar-rhabdomyosarcoma-growth
#26
JOURNAL ARTICLE
Alberto Gualtieri, Valeria Bianconi, Alessandra Renzini, Luisa Pieroni, Valerio Licursi, Chiara Mozzetta
Rhabdomyosarcoma (RMS) is the most common soft-tissue sarcoma of childhood characterized by the inability to exit the proliferative myoblast-like stage. The alveolar fusion positive subtype (FP-RMS) is the most aggressive and is mainly caused by the expression of PAX3/7-FOXO1 oncoproteins, which are challenging pharmacological targets. Here, we show that the DEAD box RNA helicase 5 (DDX5) is overexpressed in alveolar RMS cells and that its depletion and pharmacological inhibition decrease FP-RMS viability and slow tumor growth in xenograft models...
August 30, 2022: Cell Reports
https://read.qxmd.com/read/36039894/synergistic-effects-of-folic-acid-and-n-3-polyunsaturated-fatty-acid-in-preventing-neural-tube-defects-in-diabetic-mice
#27
JOURNAL ARTICLE
Kelei Li, Xianfeng Shao, Huiying Li, Xiaotong Kuang, Xiaolei Song, Yan Wang, Suqin Zhu, Duo Li
The present study aimed to investigate whether a combination of folic acid (FA) and n -3 polyunsaturated fatty acids (PUFA) has a better preventive effect on maternal diabetes-induced neural tube defects (NTD) than FA alone. The experiment included five groups of pregnant mice: healthy control (HC), diabetes mellitus control (DMC), diabetes + n -3 PUFA (DM n -3), diabetes + FA (DMFA), and diabetes + FA + n -3 PUFA (DMFA + n -3). The incidence of NTD in DMFA + n -3 (1.04%) was significantly lower than that in DMFA (8...
August 30, 2022: Journal of Agricultural and Food Chemistry
https://read.qxmd.com/read/35879366/therapeutic-targeting-of-atr-in-alveolar-rhabdomyosarcoma
#28
JOURNAL ARTICLE
Heathcliff Dorado García, Fabian Pusch, Yi Bei, Jennifer von Stebut, Glorymar Ibáñez, Kristina Guillan, Koshi Imami, Dennis Gürgen, Jana Rolff, Konstantin Helmsauer, Stephanie Meyer-Liesener, Natalie Timme, Victor Bardinet, Rocío Chamorro González, Ian C MacArthur, Celine Y Chen, Joachim Schulz, Antje M Wengner, Christian Furth, Birgit Lala, Angelika Eggert, Georg Seifert, Patrick Hundsoerfer, Marieluise Kirchner, Philipp Mertins, Matthias Selbach, Andrej Lissat, Frank Dubois, David Horst, Johannes H Schulte, Simone Spuler, Daoqi You, Filemon Dela Cruz, Andrew L Kung, Kerstin Haase, Michela DiVirgilio, Monika Scheer, Michael V Ortiz, Anton G Henssen
Despite advances in multi-modal treatment approaches, clinical outcomes of patients suffering from PAX3-FOXO1 fusion oncogene-expressing alveolar rhabdomyosarcoma (ARMS) remain dismal. Here we show that PAX3-FOXO1-expressing ARMS cells are sensitive to pharmacological ataxia telangiectasia and Rad3 related protein (ATR) inhibition. Expression of PAX3-FOXO1 in muscle progenitor cells is not only sufficient to increase sensitivity to ATR inhibition, but PAX3-FOXO1-expressing rhabdomyosarcoma cells also exhibit increased sensitivity to structurally diverse inhibitors of ATR...
July 25, 2022: Nature Communications
https://read.qxmd.com/read/35839732/molecular-testing-of-rhabdomyosarcoma-in-clinical-trials-to-improve-risk-stratification-and-outcome-a-consensus-view-from-european-paediatric-soft-tissue-sarcoma-study-group-children-s-oncology-group-and-cooperative-weichteilsarkom-studiengruppe
#29
REVIEW
Simone Hettmer, Corinne M Linardic, Anna Kelsey, Erin R Rudzinski, Christian Vokuhl, Joanna Selfe, Olivia Ruhen, Jack F Shern, Javed Khan, Alexander R Kovach, Philip J Lupo, Susanne A Gatz, Beat W Schäfer, Samuel Volchenboum, Véronique Minard-Colin, Ewa Koscielniak, Douglas S Hawkins, Gianni Bisogno, Monika Sparber-Sauer, Rajkumar Venkatramani, Johannes H M Merks, Janet Shipley
Rhabdomyosarcomas (RMSs) are the most common soft tissue sarcomas in children/adolescents less than 18 years of age with an annual incidence of 1-2/million. Inter/intra-tumour heterogeneity raise challenges in clinical, pathological and biological research studies. Risk stratification in European and North American clinical trials previously relied on clinico-pathological features, but now, incorporates PAX3/7-FOXO1-fusion gene status in the place of alveolar histology. International working groups propose a coordinated approach through the INternational Soft Tissue SaRcoma ConsorTium to evaluate the specific genetic abnormalities and generate and integrate molecular and clinical data related to patients with RMS across different trial settings...
September 2022: European Journal of Cancer
https://read.qxmd.com/read/35574376/met-inhibition-sensitizes-rhabdomyosarcoma-cells-to-notch-signaling-suppression
#30
JOURNAL ARTICLE
Clara Perrone, Silvia Pomella, Matteo Cassandri, Michele Pezzella, Giuseppe Maria Milano, Marta Colletti, Cristina Cossetti, Giulia Pericoli, Angela Di Giannatale, Emmanuel de Billy, Maria Vinci, Stefania Petrini, Francesco Marampon, Concetta Quintarelli, Riccardo Taulli, Josep Roma, Soledad Gallego, Simona Camero, Paolo Mariottini, Manuela Cervelli, Roberta Maestro, Lucio Miele, Biagio De Angelis, Franco Locatelli, Rossella Rota
Rhabdomyosarcoma (RMS) is a pediatric myogenic soft tissue sarcoma. The Fusion-Positive (FP) subtype expresses the chimeric protein PAX3-FOXO1 (P3F) while the Fusion-Negative (FN) is devoid of any gene translocation. FP-RMS and metastatic FN-RMS are often unresponsive to conventional therapy. Therefore, novel therapeutic approaches are needed to halt tumor progression. NOTCH signaling has oncogenic functions in RMS and its pharmacologic inhibition through γ-secretase inhibitors blocks tumor growth in vitro and in vivo ...
2022: Frontiers in Oncology
https://read.qxmd.com/read/35398773/overlapping-association-signals-in-the-genetics-of-hair-related-phenotypes-in-humans-and-their-relevance-to-predictive-dna-analysis
#31
JOURNAL ARTICLE
Ewelina Pośpiech, Joanna Karłowska-Pik, Magdalena Kukla-Bartoszek, Anna Woźniak, Michał Boroń, Magdalena Zubańska, Agata Jarosz, Agnieszka Bronikowska, Tomasz Grzybowski, Rafał Płoski, Magdalena Spólnicka, Wojciech Branicki
Genetic prediction of different hair phenotypes can help reconstruct the physical appearance of an individual whose biological sample is analyzed in criminal and identification cases. Up to date, forensic prediction models for hair colour, hair shape, hair loss and hair greying have been developed, but studies investigating predictability of hair thickness and density traits are missing. First data suggesting overlapping associations in various hair features have emerged in recent years, suggesting partially common genetic basis and molecular mechanisms, and this knowledge can be used for predictive purposes...
March 25, 2022: Forensic Science International. Genetics
https://read.qxmd.com/read/35065464/enhanced-antioxidation-capacity-endowed-to-a-mixed-type-aldose-reductase-inhibitor-leads-to-a-promising-anti-diabetic-complications-agent
#32
JOURNAL ARTICLE
Yuanlin Liu, Hui Mo, Kun Zhang, Meili Yin, Sheng Yuan, Yanbing Li, Yifang Li, Wenda Zhu, Yiping Fan, Yancong Zeng, Hiroshi Kurihara, Rongrong He, Heru Chen
A series of 5f-based new compounds has been designed and synthesized. In vitro screening demonstrated that the binding affinity and selectivity on aldose reductase (AR) were positively correlated with its antioxidation capacity. Compound 6d was verified the most active candidate, where its IC50 , selective index (SI), and EC50 value was 22.3 ± 1.6 nM, 236.2, and 8.7 μM respectively. 6d was confirmed as both an excellent antioxidant and aldose reductase inhibitor (ARI). It was identified as a mixed type ARI with Ki and Kis values of 23...
March 2022: Bioorganic Chemistry
https://read.qxmd.com/read/34980443/-alveolar-rhabdomyosarcoma-two-fusion-negative-cases-lacking-pax3-foxo1-and-pax7-foxo1
#33
JOURNAL ARTICLE
Claudia Mestre-Alagarda, M Carmen Gómez-Mateo, M Dolores Berenguer-Romero, Nam-Cha Syonghyun, Gema Nieto, Samuel Navarro-Fos
Rhabdomyosarcoma is the most common soft tissue sarcoma in childhood and adolescence. Morphologically, two major forms are described: alveolar and embryonal rhabdomyosarcoma. The former is generally associated with a poorer prognosis and it usually harbors a characteristic fusion gene, PAX3/7-FOXO1, that is used to confirm the diagnosis. We present two cases, both of which exhibited the classic alveolar histology with immunohistochemical myogenic differentiation (Desmin, MYOD-1 and Myogenin expression) and lacked the characteristic fusion gene PAX3/7-FOXO1...
January 2022: Revista Española de Patología
https://read.qxmd.com/read/34697065/fusion-of-the-paired-box-3-pax3-and-myocardin-myocd-genes-in-pediatric-rhabdomyosarcoma
#34
JOURNAL ARTICLE
Ioannis Panagopoulos, Ludmila Gorunova, Kristin Andersen, Marius Lund-Iversen, Svetlana Tafjord, Francesca Micci, Sverre Heim
BACKGROUND/AIM: Fusions of the paired box 3 gene (PAX3 in 2q36) with different partners have been reported in rhabdomyosarcomas and biphenotypic sinonasal sarcomas. We herein report the myocardin (MYOCD on 17p12) gene as a novel PAX3-fusion partner in a pediatric tumor with adverse clinical outcome. MATERIALS AND METHODS: A rhabdomyo-sarcoma found in a 10-year-old girl was studied using a range of genetic methodologies. RESULTS: The karyotype of the tumor cells was 48,XX,add(2)(q11),+del(2)(q35),add(3)(q?25),-7, del(8)(p 21),-15, add(17)(p 11), + 20, +der(?) t(?; 15) (?;q15),+mar[8]/46,XX[2]...
November 2021: Cancer Genomics & Proteomics
https://read.qxmd.com/read/34630958/therapeutic-potential-of-mesenchymal-stem-cells-for-peripheral-artery-disease-in-a-rat-model-of-hindlimb-ischemia
#35
JOURNAL ARTICLE
Amani M El Amin Ali, Amira S Ahmed, Dina F El-Yasergy, Moustafa A Abousarie, Ramadan M Elsayed, Yasmin E Mohammed, Rahab A Mohammed
OBJECTIVES: Mesenchymal stem cells are viewed as the first choice in regenerative medicine. This study aimed to elucidate the influence of BM-MSCs transplantation on angiogenesis in a rat model of unilateral peripheral vascular disease. MATERIALS AND METHODS: Twenty-one rats were arbitrarily allocated into three groups (7/group). Group I: control sham-operated rats, Group II: control ischemic group: Rats were subjected to unilateral surgical ligation of the femoral artery, and Group III: ischemia group: Rats were induced as in group II, 24 hr after ligation, they were intramuscularly injected with BM-MSCs...
June 2021: Iranian Journal of Basic Medical Sciences
https://read.qxmd.com/read/34628814/-application-of-next-generation-sequencing-in-3-waardenburg-syndrome
#36
JOURNAL ARTICLE
Bin Xu, Jiren Dai, Jing Bi, Yong Fu
Objective: To test the gene sequence of 3 patients with Waardenburg syndrome(WS) using the next generation sequencing technology in order to explore the possible mechanism of molecular genetics. Methods: Medical histories of the family members were collected. Physical examination, audiological evaluation and CT examination were performed. Peripheral blood was collected and DNA was extracted. The exon region of 159 deafness genes, 6 mitochondrial genes and 3 miRNAs of the proband were tested by next generation sequencing...
October 2021: Journal of Clinical Otorhinolaryngology, Head, and Neck Surgery
https://read.qxmd.com/read/34582098/congenital-rhabdomyosarcoma-a-report-from-the-european-paediatric-soft-tissue-sarcoma-study-group
#37
JOURNAL ARTICLE
Gianni Bisogno, Veronique Minard-Colin, Myriam Ben Arush, Julia Daragjati, Beatrice Coppadoro, Soledad Gallego, Rita Alaggio, Naima Smeulders, Peter Mudry, Angelica Zin, Johannes H M Merks, Olga Slater
PROCEDURE: Congenital rhabdomyosarcoma (RMS) represents a challenging disease due to its characteristics and the difficulties in delivering treatment in this immature population. METHODS: We analyzed treatment and outcome of patients with congenital RMS, defined as tumor diagnosed in the first 2 months of life, enrolled in the European paediatric Soft tissue sarcoma Study Group protocols. RESULTS: Twenty-four patients with congenital RMS were registered...
February 2022: Pediatric Blood & Cancer
https://read.qxmd.com/read/34573355/high-frequency-of-tumor-propagating-cells-in-fusion-positive-rhabdomyosarcoma
#38
JOURNAL ARTICLE
Melanie Generali, Sampoorna Satheesha, Peter K Bode, Debora Wanner, Beat W Schäfer, Elisa A Casanova
Rhabdomyosarcoma (RMS) is the most common soft tissue sarcoma in children. Fusion-positive RMS (FPRMS), expressing the PAX3/7-FOXO1, has a worse prognosis compared to the more common fusion-negative RMS (FNRMS). Although several studies reported hierarchical organization for FNRMS with the identification of cancer stem cells, the cellular organization of FPRMS is not yet clear. In this study we investigated the expression of key stem cell markers, developed a sphere assay, and investigated the seven most common FPRMS cell lines for subpopulations of tumor propagating cancer stem-like cells, also called cancer stem cells (CSCs)...
August 31, 2021: Genes
https://read.qxmd.com/read/34447968/effect-of-ciglitazone-on-adipogenic-transdifferentiation-of-bovine-skeletal-muscle-satellite-cells
#39
JOURNAL ARTICLE
Junfang Zhang, Qiang Li, Yan Yan, Bin Sun, Ying Wang, Lin Tang, Enze Wang, Jia Yu, Kim Margarette Corpuz Nogoy, Xiangzi Li, Seong-Ho Choi
Ciglitazone is a member of the thiazolidinedione family, and specifically binds to peroxisome proliferator-activated receptor- γ ( PPARγ ), thereby promoting adipocyte differentiation. We hypothesized that ciglitazone as a PPARγ ligand in the absence of an adipocyte differentiation cocktail would increase adiponectin and adipogenic gene expression in bovine satellite cells (BSC). Muscle-derived BSCs were isolated from six, 18-month-old Yanbian Yellow Cattle. The BSC were cultured for 96 h in differentiation medium containing 5 µM ciglitazone (CL), 10 µM ciglitazone (CM), or 20 µM ciglitazone (CH)...
July 2021: Journal of Animal Science and Technology
https://read.qxmd.com/read/34447967/effect-of-palmitoleic-acid-on-the-differentiation-of-bovine-skeletal-muscle-satellite-cells
#40
JOURNAL ARTICLE
Junfang Zhang, Qiang Li, Kim Margarette Corpuz Nogoy, Jianfu Sun, Bin Sun, Ying Wang, Lin Tang, Jia Yu, Xin Jin, Xiangzi Li, Seong-Ho Choi
We hypothesized that the unsaturated fatty acid palmitoleic acid (POA) could promote the expression of adipogenic/lipogenic genes in bovine skeletal muscle satellite cells (BSCs). The BSCs were cultured in a growth medium containing 10% fetal bovine serum. When the cells reached 80%-90% confluence, we used the differentiation medium with 5% horse serum for differentiation for 96 h. The differentiation medium contained 50 µM, 100 µM and 200 µM POA. Control BSC were cultured only in differentiation media. Compared with the control BSC, the POA BSC significantly up-regulated the expression of paired box 3 ( Pax3 ) and paired box 7 ( Pax7 ) and down-regulated myogenin gene expression ( p < 0...
July 2021: Journal of Animal Science and Technology
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