keyword
https://read.qxmd.com/read/38482698/chromosomal-inversions-and-the-demography-of-speciation-in-drosophila-montana-and-drosophila-flavomontana
#21
JOURNAL ARTICLE
N Poikela, D R Laetsch, V Hoikkala, K Lohse, M Kankare
Chromosomal inversions may play a central role in speciation given their ability to locally reduce recombination and therefore genetic exchange between diverging populations. We analysed long- and short-read whole-genome data from sympatric and allopatric populations of two Drosophila virilis group species, D. montana and D. flavomontana, to understand if inversions have contributed to their divergence. We identified three large alternatively fixed inversions on the X chromosome and one on each of the autosomes 4 and 5...
March 14, 2024: Genome Biology and Evolution
https://read.qxmd.com/read/38479386/giraffe-lineages-are-shaped-by-major-ancient-admixture-events
#22
JOURNAL ARTICLE
Laura D Bertola, Liam Quinn, Kristian Hanghøj, Genís Garcia-Erill, Malthe Sebro Rasmussen, Renzo F Balboa, Jonas Meisner, Thomas Bøggild, Xi Wang, Long Lin, Casia Nursyifa, Xiaodong Liu, Zilong Li, Mumbi Chege, Yoshan Moodley, Anna Brüniche-Olsen, Josiah Kuja, Mikkel Schubert, Morris Agaba, Cindy G Santander, Mikkel-Holger S Sinding, Vincent Muwanika, Charles Masembe, Hans R Siegismund, Ida Moltke, Anders Albrechtsen, Rasmus Heller
Strong genetic structure has prompted discussion regarding giraffe taxonomy,1 , 2 , 3 including a suggestion to split the giraffe into four species: Northern (Giraffa c. camelopardalis), Reticulated (G. c. reticulata), Masai (G. c. tippelskirchi), and Southern giraffes (G. c. giraffa).4 , 5 , 6 However, their evolutionary history is not yet fully resolved, as previous studies used a simple bifurcating model and did not explore the presence or extent of gene flow between lineages. We therefore inferred a model that incorporates various evolutionary processes to assess the drivers of contemporary giraffe diversity...
March 6, 2024: Current Biology: CB
https://read.qxmd.com/read/38478343/detection-of-cancer-stem-cells-in-normal-and-dysplastic-leukemic-human-blood
#23
JOURNAL ARTICLE
Alessia De Stefano, Alessandra Cappellini, Irene Casalin, Stefania Paolini, Sarah Parisi, Maria Vittoria Marvi, Antonietta Fazio, Irene Neri, Foteini-Dionysia Koufi, Stefano Ratti, Carlo Finelli, Antonio Curti, Lucia Manzoli, Lucio Cocco, Matilde Y Follo
The hierarchical organization of the leukemic stem cells (LSCs) is identical to that of healthy counterpart cells. It may be split into roughly three stages: a small number of pluripotent stem cells at the top, few lineage-restricted cells in the middle, and several terminally differentiated blood cells at the bottom. Although LSCs can differentiate into the hematopoietic lineage, they can also accumulate as immature progenitor cells, also known as blast cells. Since blast cells are uncommon in healthy bloodstreams, their presence might be a sign of cancer...
2024: Methods in Molecular Biology
https://read.qxmd.com/read/38471299/simultaneous-analysis-of-cannabinoids-and-terpenes-in-cannabis-sativa-inflorescence-using-full-comprehensive-two-dimensional-liquid-chromatography-coupled-to-smart-active-modulation
#24
JOURNAL ARTICLE
Sebastián J Caruso, Agustín Acquaviva, Julian Lemus Müller, Cecilia B Castells
Nowadays, the higher peak capacity achievable by comprehensive two-dimensional liquid chromatography (LC×LC) for the analysis of vegetal samples is well-recognized. In addition, numerous compounds may be present in very different amounts. Cannabinoids and terpenes represent the main components of Cannabis sativa inflorescence samples, whose quantities are relevant for many application purposes. The analyses of both families are performed by different methods, at least two different separation methodologies, mainly according to their chemical characteristics and concentration levels...
March 11, 2024: Journal of Chromatography. A
https://read.qxmd.com/read/38469045/intraspecific-differentiation-of-lindera-obtusiloba-as-revealed-by-comparative-plastomic-and-evolutionary-analyses
#25
JOURNAL ARTICLE
Xiangyu Tian, Jia Guo, Yu Song, Qunfei Yu, Chao Liu, Zhixi Fu, Yuhua Shi, Yizhen Shao, Zhiliang Yuan
Lindera obtusiloba Blume is the northernmost tree species in the family Lauraceae, and it is a key species in understanding the evolutionary history of this family. The species of L. obtusiloba in East Asia has diverged into the Northern and Southern populations, which are geographically separated by an arid belt. Though the morphological differences between populations have been observed and well documented, intraspecific variations at the plastomic level have not been systematically investigated to date. Here, ten chloroplast genomes of L...
March 2024: Ecology and Evolution
https://read.qxmd.com/read/38455094/predicting-future-occlusion-or-stenosis-of-lower-extremity-bypass-grafts-using-artificial-intelligence-to-simultaneously-analyze-all-flow-velocities-collected-in-current-and-previous-ultrasound-examinations
#26
JOURNAL ARTICLE
Xiao Luo, Fattah Muhammad Tahabi, Dave M Rollins, Alan P Sawchuk
OBJECTIVE: Routine surveillance with duplex ultrasound (DUS) examination is recommended after femoral-popliteal and femoral-tibial-pedal vein bypass grafts with various intervals postoperatively. The presently used methodology to analyze bypass graft DUS examination does not use all the available data and has been shown to have a significant rate for missing impending bypass graft failure. The objective of this research is to investigate recurrent neural networks (RNNs) to predict future bypass graft occlusion or stenosis...
2024: Journal of vascular surgery. Vascular science
https://read.qxmd.com/read/38451109/shear-zones-in-granular-mixtures-of-hard-and-soft-particles-with-high-and-low-friction
#27
JOURNAL ARTICLE
Aditya Pratap Singh, Vasileios Angelidakis, Thorsten Pöschel, Sudeshna Roy
Granular materials show inhomogeneous flows characterized by strain localization. When strain is localized in a sheared granular material, rigid regions of a nearly undeformed state are separated by shear bands, where the material yields and flows. The characteristics of the shear bands are determined by the geometry of the system, the micromechanical material properties, and the kinematics at the particle level. For a split-bottom shear cell, recent experimental work has shown that mixtures of hard, frictional and soft, nearly frictionless particles exhibit wider shear zones than samples with only one of the two components...
March 7, 2024: Soft Matter
https://read.qxmd.com/read/38439990/experiment-data-human-in-the-loop-decision-support-in-process-control-rooms
#28
JOURNAL ARTICLE
Chidera Winifred Amazu, Joseph Mietkiewicz, Ammar N Abbas, Houda Briwa, Andres Alonso Perez, Gabriele Baldissone, Micaela Demichela, Davide Fissore, Anders L Madsen, Maria Chiara Leva
These datasets contain measures from multi-modal data sources. They include objective and subjective measures commonly used to determine cognitive states of workload, situational awareness, stress, and fatigue using data collection tools such as NASA-TLX, SART, eye tracking, EEG, Health Monitoring Watch, a survey to assess training, and a think-aloud situational awareness assessment following the SPAM methodology. Also, data from a simulation formaldehyde production plant based on the interaction of the participants in a controlled control room experimental setting is included...
April 2024: Data in Brief
https://read.qxmd.com/read/38428661/predicting-the-mechanism-of-action-of-yqyyjd-prescription-in-the-treatment-of-non-small-cell-lung-cancer-using-transcriptomics-analysis
#29
JOURNAL ARTICLE
Yinan Yin, Yichao Wang, Chengyan Wang, Yilu Zhang, Ao Qi, Jiajun Song, Ling Xu, Wenxiao Yang, Lijing Jiao
ETHNOPHARMACOLOGICAL RELEVANCE: The efficacy of the herbal formula Yiqi Yangyin Jiedu (YQYYJD) in the treatment of advanced lung cancer has been reported in clinical trials. However, the key anti-lung cancer herbs and molecular mechanisms underlying its inhibition of lung cancer are not well-understood. AIM OF THE STUDY: To identify the key anti-lung cancer herbs in the YQYYJD formula and investigate their therapeutic effect and potential mechanism of action in non-small cell lung cancer (NSCLC) using transcriptomics and bioinformatics techniques...
February 28, 2024: Journal of Ethnopharmacology
https://read.qxmd.com/read/38425264/efficient-homolytic-cleavage-of-h2o2-on-hydroxyl-enriched-spinel-cufe2o4-with-dual-lewis-acid-sites
#30
JOURNAL ARTICLE
Lei Tian, Zi-Jun Tang, Le-Yang Hao, Ting Dai, Jian-Ping Zou, Zhao-Qing Liu
Traditional H2O2 cleavage mediated by macroscopic electron transfer (MET) not only has low utilization of H2O2, but also sacrifices the stability of catalysts. We present a non-redox hydroxyl-enriched spinel (CuFe2O4) catalyst with dual Lewis acid sites to realize the homolytic cleavage of H2O2. The results of systematic experiments, in-situ characterizations, and theoretical calculations confirm that tetrahedral Cu sites with optimal Lewis acidity and strong electron delocalization can synergistically elongate the O-O bonds (1...
February 29, 2024: Angewandte Chemie
https://read.qxmd.com/read/38421113/the-opposed-forces-of-differentiation-and-admixture-across-glacial-cycles-in-the-butterfly-aglais-urticae
#31
JOURNAL ARTICLE
Valéria Marques, Joan Carles Hinojosa, Leonardo Dapporto, Gerard Talavera, Constantí Stefanescu, David Gutiérrez, Roger Vila
Glacial cycles lead to periodic population interbreeding and isolation in warm-adapted species, which impact genetic structure and evolution. However, the effects of these processes on highly mobile and more cold-tolerant species are not well understood. This study aims to shed light on the phylogeographic history of Aglais urticae, a butterfly species with considerable dispersal ability, and a wide Palearctic distribution reaching the Arctic. Through the analysis of genomic data, four main genetic lineages are identified: European, Sierra Nevada, Sicily/Calabria/Peloponnese, and Eastern...
February 29, 2024: Molecular Ecology
https://read.qxmd.com/read/38420837/lattice-boltzmann-simulation-of-deformable-fluid-filled-bodies-progress-and-perspectives
#32
REVIEW
Danilo P F Silva, Rodrigo C V Coelho, Ignacio Pagonabarraga, Sauro Succi, Margarida M Telo da Gama, Nuno A M Araújo
With the rapid development of studies involving droplet microfluidics, drug delivery, cell detection, and microparticle synthesis, among others, many scientists have invested significant efforts to model the flow of these fluid-filled bodies. Motivated by the intricate coupling between hydrodynamics and the interactions of fluid-filled bodies, several methods have been developed. The objective of this review is to present a compact foundation of the methods used in the literature in the context of lattice Boltzmann methods...
February 29, 2024: Soft Matter
https://read.qxmd.com/read/38419386/recent-advancements-on-sustainable-electrochemical-water-splitting-hydrogen-energy-applications-based-on-nanoscale-transition-metal-oxides-tmo-substrates
#33
JOURNAL ARTICLE
Mohsin Saeed, Umer Shahzad, Hadi M Marwani, Abdullah M Asiri, Shujah Ur Rehman, Raed H Althomali, Mohammed M Rahman
The development of green hydrogen generation technologies is increasingly crucial to meeting the growing energy demand for sustainable and environmentally acceptable resources. Many obstacles in the advancement of electrodes prevented water electrolysis, long thought to be an eco-friendly method of producing hydrogen gas with no carbon emissions, from coming to fruition. Because of their great electrical conductivity, maximum supporting capacity, ease of modification in valence states, durability in hard environments, and high redox characteristics, transition metal oxides (TMOs) have recently captured a lot of interest as potential cathodes and anodes...
February 28, 2024: Chemistry, An Asian Journal
https://read.qxmd.com/read/38395345/preoperative-risk-factors-impacting-length-of-stay-after-transcarotid-artery-revascularization
#34
JOURNAL ARTICLE
Justin C Weissberg, Kshitij A Desai, Michael C Stoner
OBJECTIVES: Transcarotid artery revascularization (TCAR), using interoperative flow reversal is a unique, hybrid operation utilized in treating critical carotid artery stenosis. Over the past decade, TCAR has been increasingly used to treat asymptomatic carotid artery disease and has a similar risk profile to traditional carotid endarterectomy (CEA). Postoperative length of stay (LOS) has a significant impact on cost-effectiveness as well as quality outcomes in this expanded setting. The objective of this study is to develop a multivariate regression model to identify key preoperative variables and their impact factor on LOS after TCAR for asymptomatic carotid artery stenosis...
February 21, 2024: Annals of Vascular Surgery
https://read.qxmd.com/read/38390106/rsm-based-modelling-for-predicting-and-optimizing-the-rheological-and-mechanical-properties-of-fibre-reinforced-laterized-self-compacting-concrete
#35
JOURNAL ARTICLE
Sharanabasava Patil, B Ramesh, T Sathish, A Saravanan
A sustainable method to reduce the use of natural resources and the negative effects of the concrete industry on the environment is to use waste lateritic aggregate in self-compacting concrete and evaluate its fresh, mechanical and durability characteristics. Using RSM's central composite design (CCD), Thirteen different SCC mixtures have been designed with varying input factor combinations (LA: 0-100%, PPF: 0-2%) and tested for eight responses (rheological properties, like slump flow, V-funnel time, and T500; mechanical properties, like compressive, split-tensile, and flexural strengths, and durability properties like drying shrinkage and rapid chloride penetration test)...
February 29, 2024: Heliyon
https://read.qxmd.com/read/38389851/tripeptidyl-peptidase-ii-coordinates-the-homeostasis-of-calcium-and-lipids-in-the-central-nervous-system-and-its-depletion-causes-presenile-dementia-in-female-mice-through-calcium-lipid-dyshomeostasis-induced-autophagic-degradation-of-cyp19a1
#36
JOURNAL ARTICLE
Jin Zhao, Chengtong He, Xueyu Fan, Lin Wang, Liao Zhao, Hui Liu, Wujun Shen, Sanwei Jiang, Kaixuan Pei, Jingjing Gao, Yawei Qi, Yang Liu, Junqiang Zhao, Ruiling Zhang, Chengbiao Lu, Jia Tong, Jisen Huai
Rationale: Tripeptidyl peptidase II (TPP2) has been proven to be related to human immune and neurological diseases. It is generally considered as a cytosolic protein which forms the largest known protease complex in eukaryotic cells to operate mostly downstream of proteasomes for degradation of longer peptides. However, this canonical function of TPP2 cannot explain its role in a wide variety of biological and pathogenic processes. The mechanistic interrelationships and hierarchical order of these processes have yet to be clarified...
2024: Theranostics
https://read.qxmd.com/read/38389316/associations-between-systolic-pressure-vascular-waveform-and-volume-flow-with-debridement-or-amputation-treatment-decisions-in-diabetic-foot-ulcer-patients
#37
JOURNAL ARTICLE
Patrianef Darwis, Ahmad Syaifudin, Raden Suhartono, Akhmadu Muradi, Dedy Pratama, Dian Kusuma Dewi, Alif Hamzah
INTRODUCTION: Diabetic foot ulcer disease, affecting 6.3% of the global population, necessitates crucial decisions regarding debridement and amputation, with substantial cost, morbidity, and mortality implications. This study's primary goal is to determine effective vascular examination modalities, including systolic blood pressure, vascular waveforms, and blood volume flow to guide optimal treatments for diabetic foot patients. METHOD: This cross-sectional study at Cipto Mangunkusumo General Hospital aimed to identify effective vascular examination modalities, such as systolic blood pressure, vascular waveforms, and blood volume flow, to guide treatment choices for diabetic foot patients...
February 22, 2024: International Journal of Lower Extremity Wounds
https://read.qxmd.com/read/38384862/ultrafast-learning-of-four-node-hybridization-cycles-in-phylogenetic-networks-using-algebraic-invariants
#38
JOURNAL ARTICLE
Zhaoxing Wu, Claudia Solís-Lemus
MOTIVATION: The abundance of gene flow in the Tree of Life challenges the notion that evolution can be represented with a fully bifurcating process which cannot capture important biological realities like hybridization, introgression, or horizontal gene transfer. Coalescent-based network methods are increasingly popular, yet not scalable for big data, because they need to perform a heuristic search in the space of networks as well as numerical optimization that can be NP-hard. Here, we introduce a novel method to reconstruct phylogenetic networks based on algebraic invariants...
2024: Bioinform Adv
https://read.qxmd.com/read/38378440/cytopipeline-and-cytopipelinegui-a-bioconductor-r-package-suite-for-building-and-visualizing-automated-pre-processing-pipelines-for-flow-cytometry-data
#39
JOURNAL ARTICLE
Philippe Hauchamps, Babak Bayat, Simon Delandre, Mehdi Hamrouni, Marie Toussaint, Stephane Temmerman, Dan Lin, Laurent Gatto
BACKGROUND: With the increase of the dimensionality in flow cytometry data over the past years, there is a growing need to replace or complement traditional manual analysis (i.e. iterative 2D gating) with automated data analysis pipelines. A crucial part of these pipelines consists of pre-processing and applying quality control filtering to the raw data, in order to use high quality events in the downstream analyses. This part can in turn be split into a number of elementary steps: signal compensation or unmixing, scale transformation, debris, doublets and dead cells removal, batch effect correction, etc...
February 20, 2024: BMC Bioinformatics
https://read.qxmd.com/read/38367394/an-active-derivatization-detection-method-for-inline-monitoring-the-isolation-of-carbohydrates-by-preparative-liquid-chromatography
#40
JOURNAL ARTICLE
Zhen Yao, Kehan Zhu, Tianyi Gu, Oliver J Schmitz, Duxin Li
Polysaccharides have unique physio-chemical properties and various biological functions and have rapidly expanded interest over the last two decades. The purification of polysaccharides and their degraded oligosaccharides is challenging because carbohydrates have no chromophore and need a proper detector to monitor the chromatographic elution process. This study proposed an active derivatization detection (ADD) method based on active splitting from post-column flow, a microchannel reactor for efficient derivatization of polysaccharide reducing sugars with p-hydroxybenzoic acid hydrazide, and in-line detection by the UV detector of liquid chromatography system...
February 14, 2024: Journal of Chromatography. A
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