Matthew M Carter, Matthew R Olm, Bryan D Merrill, Dylan Dahan, Surya Tripathi, Sean P Spencer, Feiqiao B Yu, Sunit Jain, Norma Neff, Aashish R Jha, Erica D Sonnenburg, Justin L Sonnenburg
The gut microbiome modulates immune and metabolic health. Human microbiome data are biased toward industrialized populations, limiting our understanding of non-industrialized microbiomes. Here, we performed ultra-deep metagenomic sequencing on 351 fecal samples from the Hadza hunter-gatherers of Tanzania and comparative populations in Nepal and California. We recovered 91,662 genomes of bacteria, archaea, bacteriophages, and eukaryotes, 44% of which are absent from existing unified datasets. We identified 124 gut-resident species vanishing in industrialized populations and highlighted distinct aspects of the Hadza gut microbiome related to in situ replication rates, signatures of selection, and strain sharing...
July 6, 2023: Cell