keyword
https://read.qxmd.com/read/38350385/identification-and-characterization-of-the-receptors-of-a-microneme-adhesive-repeat-domain-of-eimeria-maxima-microneme-protein-3-in-chicken-intestine-epithelial-cells
#1
JOURNAL ARTICLE
Yang Zhang, Mingmin Lu, Jianmei Huang, Xiaowei Tian, Meng Liang, Mingyue Wang, Xiaokai Song, Lixin Xu, Ruofeng Yan, Xiangrui Li
Eimeria maxima microneme protein 3 (EmMIC3) is pivotal in the initial recognition and attachment of E. maxima sporozoites to host cells. EmMIC3 comprises 5 tandem Type I microneme adhesive repeat (MAR) domains, among which MAR2 of EmMIC3 (EmMAR2) has been identified as the primary determinant of EmMIC3-mediated tissue tropism. Nonetheless, the mechanisms through which EmMAR2 guides the parasite to its invasion site through interactions with host receptors remained largely uncharted. In this study, we employed yeast two-hybrid (YTH) screening assays and shotgun LC-MS/MS analysis to identify EmMAR2 receptors in chicken intestine epithelial cells...
January 20, 2024: Poultry Science
https://read.qxmd.com/read/37868788/genome-wide-association-study-of-neuropathic-ocular-pain
#2
JOURNAL ARTICLE
Jaxon J Huang, Daniel A Rodriguez, Susan H Slifer, Eden R Martin, Roy C Levitt, Anat Galor
PURPOSE: To conduct a genome-wide association study (GWAS) of individuals with neuropathic ocular pain (NOP) symptoms to identify genomic variants that may predispose to NOP development. DESIGN: Prospective study of individuals with NOP. PARTICIPANTS: Three hundred twenty-nine patients recruited from the Miami Veterans Affairs eye clinic. METHODS: The Neuropathic Pain Symptom Inventory modified for the eye (NPSI-Eye) was completed to calculate a NPSI-Eye-Sub-Score (summed ratings of burning and wind sensitivity) as an indicator of NOP severity...
2024: Ophthalmol Sci
https://read.qxmd.com/read/37768083/the-reep5-tram1-complex-binds-sars-cov-2-nsp3-and-promotes-virus-replication
#3
JOURNAL ARTICLE
Jie Li, Qi Gui, Feng-Xia Liang, Joseph Sall, Qingyue Zhang, Yatong Duan, Avantika Dhabaria, Manor Askenazi, Beatrix Ueberheide, Kenneth A Stapleford, Michele Pagano
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), like other coronaviruses, replicates their genome in virus-induced cytosolic membrane-bound replication organelles (ROs). SARS-CoV-2 promotes the biogenesis of ROs by inducing the rearrangement of endoplasmic reticulum (ER) membranes. NSP3, NSP4, and NSP6 are transmembrane viral non-structural proteins (NSPs) and essential players in the formation of ROs. To understand how these three NSPs work synergistically with host-binding proteins, we performed affinity purifications followed by mass spectrometry analyses to study the host-viral protein-protein interactome of NSP3, NSP4, and NSP6 expressed individually and in combination...
September 28, 2023: Journal of Virology
https://read.qxmd.com/read/37301122/identification-of-several-inflammation-related-genes-based-on-bioinformatics-and-experiments
#4
JOURNAL ARTICLE
Song Wang, Zhiwei Zhang, Jianhui Liang, Kaihuang Li, Li Bo, Haibo Zhan, Xin Hong, Jiawei Hu, Lu Yang Qian, Xuqiang Liu, Bin Zhang
BACKGROUND: Osteoarthritis (OA) is a common disease of elderly individuals, with an unclear pathogenesis and limited treatment options to date. Inflammation occurs prominently in osteoarthritis, thereby making anti-inflammatory treatments promising in clinical outcomes. Therefore, it is of diagnostic and therapeutic significance to explore more inflammatory genes. METHOD: In this study, appropriate datasets were first acquired through gene set enrichment analysis (GSEA), followed by inflammation-related genes through weighted gene coexpression network analysis (WGCNA)...
June 8, 2023: International Immunopharmacology
https://read.qxmd.com/read/37147312/oligomeric-scaffolding-for-curvature-generation-by-er-tubule-forming-proteins
#5
JOURNAL ARTICLE
Yun Xiang, Rui Lyu, Junjie Hu
The reticulons and receptor expression-enhancing proteins (REEPs) in the endoplasmic reticulum (ER) are necessary and sufficient for generating ER tubules. However, the mechanism of curvature generation remains elusive. Here, we systematically analyze components of the REEP family based on AI-predicted structures. In yeast REEP Yop1p, TM1/2 and TM3/4 form hairpins and TM2-4 exist as a bundle. Site-directed cross-linking reveals that TM2 and TM4 individually mediate homotypic dimerization, allowing further assembly into a curved shape...
May 5, 2023: Nature Communications
https://read.qxmd.com/read/36543404/-establishment-of-local-allergic-rhinitis-tolerance-in-mouse-model
#6
JOURNAL ARTICLE
Qidi Zhang, Wanting Zhu, Zhixin Zou, Wenting Yu, Pei Gao, Ying Wang, Jianjun Chen
Objective: To establish a mouse model of local allergic rhinitis tolerance by intranasal infusion of allergen, and study its immunological indexes and characteristics. Methods: The mice were given ovalbumin(OVA) and phosphate buffer solution(PBS) daily, and their allergic symptoms were recorded. OVA-specific antibodies(IgE, IgG1, IgG2a) in serum and cytokine(IL-4, IL-10, IFN-γ) in splenic culture supernatant were detected. The infiltration of eosinophils and goblet cells in nasal mucosa were observed, and the changes in local nasal mucosa genes were analyzed by RNA-seq technique...
December 2022: Journal of Clinical Otorhinolaryngology, Head, and Neck Surgery
https://read.qxmd.com/read/36191880/the-reep-family-of-proteins-molecular-targets-and-role-in-pathophysiology
#7
REVIEW
Sisi Fan, Huimei Liu, Lanfang Li
Receptor expression-enhancing proteins (REEPs) are an evolutionarily conserved protein family that is pivotal to the structure and function of the endoplasmic reticulum (ER). The REEP family can be classified into two major subfamilies in higher species, the REEP1-4 and REEP5-6 subfamilies. Within the REEP1-4 subfamily, REEP1 and REEP2 are closely related, and REEP3 and REEP4 are similarly related. The REEP family is widely distributed in various tissues. Recent studies indicate that the REEP family is involved in many pathological and physiological processes, such as ER morphogenesis and remodeling, microtubule cytoskeleton regulation, and the trafficking and expression of G protein-coupled receptors (GPCRs)...
September 30, 2022: Pharmacological Research: the Official Journal of the Italian Pharmacological Society
https://read.qxmd.com/read/34025654/attenuated-t-cell-responses-are-associated-with-the-blockade-of-cerebral-malaria-development-by-yop1-deficient-plasmodium-berghei-anka
#8
JOURNAL ARTICLE
Lei Hai, Xiaoyu Shi, Qian Wang
Reticulon and the REEP family of proteins stabilize the high curvature of endoplasmic reticulum tubules. The REEP5 homolog in Plasmodium , Plasmodium berghei YOP1 ( Pb YOP1), plays an important role in the erythrocytic cycle of the P. berghei ANKA and the pathogenesis of experimental cerebral malaria (ECM), but the mechanisms are largely unknown. Here, we show that protection from ECM in Pb yop1Δ-infected mice is associated with reduced intracerebral Th1 accumulation, decreased expression of pro-inflammatory cytokines and chemokines, and attenuated pathologies in the brainstem, though the total number of CD4+ and CD8+ T cells sequestered in the brain are not reduced...
2021: Frontiers in Immunology
https://read.qxmd.com/read/33923730/selection-and-validation-of-suitable-reference-genes-for-rt-qpcr-analysis-in-the-rare-aquatic-firefly-aquatica-leii-coleoptera-lampyridae
#9
JOURNAL ARTICLE
Xinhua Fu, Victor Benno Meyer-Rochow
Aquatica leii Fu and Ballantyne is a species of rare aquatic firefly and endemic in China. It is considered good material to study the molecular mechanism of sexual flash communication systems. To improve conservation and behavioral research strategies, large-scale genetic studies involving gene-expression analysis are required and reverse transcription-quantitative polymerase chain reaction (RT-qPCR) is the most commonly used method. However, there have been very few reports on appropriate reference genes in any species of firefly...
April 16, 2021: Insects
https://read.qxmd.com/read/33861319/fit2-organizes-lipid-droplet-biogenesis-with-er-tubule-forming-proteins-and-septins
#10
JOURNAL ARTICLE
Fang Chen, Bing Yan, Jie Ren, Rui Lyu, Yanfang Wu, Yuting Guo, Dong Li, Hong Zhang, Junjie Hu
Lipid droplets (LDs) are critical for lipid storage and energy metabolism. LDs form in the endoplasmic reticulum (ER). However, the molecular basis for LD biogenesis remains elusive. Here, we show that fat storage-inducing transmembrane protein 2 (FIT2) interacts with ER tubule-forming proteins Rtn4 and REEP5. The association is mainly transmembrane domain based and stimulated by oleic acid. Depletion of ER tubule-forming proteins decreases the number and size of LDs in cells and Caenorhabditis elegans, mimicking loss of FIT2...
May 3, 2021: Journal of Cell Biology
https://read.qxmd.com/read/33854621/circular-rna-hsa_circ_0000700-promotes-cell-proliferation-and-migration-in-esophageal-squamous-cell-carcinoma-by-sponging-mir-1229
#11
JOURNAL ARTICLE
Jun Fang, Wen Hao Ji, Fang Zheng Wang, Tie Ming Xie, Lei Wang, Zhen Fu Fu, Zhun Wang, Feng Qin Yan, Qi Liang Shen, Zhi Min Ye
Accumulating evidence has demonstrated that circular RNAs (circRNAs) are involved in the pathogenesis of cancer, including that of esophageal squamous cell carcinoma (ESCC). The current study aimed to investigate the role of hsa_circ_0000700 in ESCC. hsa_circ_0000700, miR-1229, and related functional gene expression was measured by RT-qPCR. To characterize the functions of hsa_circ_0000700 and miR-1229, ESCC cells were infected with hsa_circ_0000700-specific siRNA, miR-1229 mimics, and an inhibitor alone or in combination...
2021: Journal of Cancer
https://read.qxmd.com/read/33677919/combined-transcriptome-and-proteome-analyses-reveal-differences-in-the-longissimus-dorsi-muscle-between-kazakh-cattle-and-xinjiang-brown-cattle
#12
JOURNAL ARTICLE
XiangMin Yan, Jia Wang, Hongbo Li, Liang Gao, Juan Geng, Zhen Ma, Jianming Liu, Jinshan Zhang, Penggui Xie, Lei Chen
OBJECTIVE: With the rapid development of proteomics sequencing and RNA sequencing technology, multi-omics analysis has become a current research hotspot. Our previous study indicated that Xinjiang brown cattle have better meat quality than Kazakh cattle. In this study, Xinjiang brown cattle and Kazakh cattle were used as the research objects. METHODS: Proteome sequencing and RNA sequencing technology were used to analyze the proteome and transcriptome of the longissimus dorsi muscle of the two breeds of adult steers (n = 3)...
September 2021: Animal bioscience
https://read.qxmd.com/read/32764968/identification-of-important-modules-and-biomarkers-in-breast-cancer-based-on-wgcna
#13
JOURNAL ARTICLE
Zelin Tian, Weixiang He, Jianing Tang, Xing Liao, Qian Yang, Yumin Wu, Gaosong Wu
Introduction: Breast cancer (BRCA) has the highest incidence among female malignancies, and the prognosis for these patients remains poor. Materials and Methods: In this study, core modules and central genes related to BRCA were identified through a weighted gene co-expression network analysis (WGCNA). Gene expression profiles and clinical data of GSE25066 were obtained from the Gene Expression Omnibus (GEO) database. The result was validated with RNA-seq data from The Cancer Genome Atlas (TCGA) and Oncomine database...
2020: OncoTargets and Therapy
https://read.qxmd.com/read/32642770/proteome-wide-data-analysis-reveals-tissue-specific-network-associated-with-sars-cov-2-infection
#14
JOURNAL ARTICLE
Li Feng, Yuan-Yuan Yin, Cong-Hui Liu, Ke-Ren Xu, Qing-Run Li, Jia-Rui Wu, Rong Zeng
For patients with COVID-19 caused by SARS-CoV-2, the damages to multiple organs have been clinically observed. Since most of current investigations for virus-host interaction are based on cell level, there is an urgent demand to probe tissue-specific features associated with SARS-CoV-2 infection. Based on collected proteomic datasets from human lung, colon, kidney, liver and heart, we constructed a virus-receptor network, a virus-interaction network and a virus-perturbation network. In the tissue-specific networks associated with virus-host crosstalk, both common and different key hubs are revealed in diverse tissues...
July 8, 2020: Journal of Molecular Cell Biology
https://read.qxmd.com/read/32548572/towards-understanding-the-role-of-receptor-expression-enhancing-protein-5-reep5-in-cardiac-muscle-and-beyond
#15
COMMENT
Shin-Haw Lee, Sina Hadipour-Lakmehsari, Anthony O Gramolini
The sarco-endoplasmic reticulum (SR/ER) is the largest membrane-bound organelle in eukaryotic cells and plays important roles in essential cellular processes, and in development and progression of many cardiac diseases. However, many aspects of its structural organization remain largely unknown, particularly in cells with a highly differentiated SR/ER network. In a recently published study led by Lee et al. (Nat Commun 11(1):965), we reported a cardiac enriched SR/ER membrane protein REEP5 that is centrally involved in regulating SR/ER organization and cellular stress responses in cardiac myocytes...
April 15, 2020: Cell Stress
https://read.qxmd.com/read/32432369/a-plasmodium-homolog-of-er-tubule-forming-proteins-is-required-for-parasite-virulence
#16
JOURNAL ARTICLE
Xiaoyu Shi, Lei Hai, Kavitha Govindasamy, Jian Gao, Isabelle Coppens, Junjie Hu, Qian Wang, Purnima Bhanot
Reticulon and REEP family of proteins stabilize the high curvature of endoplasmic reticulum (ER) tubules. P. berghei Yop1 (PbYop1) is a REEP5 homolog in Plasmodium. Here we characterize its function using a gene-knockout (Pbyop1∆). Pbyop1∆ asexual stage parasites display abnormal ER architecture and an enlarged digestive vacuole. The erythrocytic cycle of Pbyop1∆ parasites is severely attenuated and the incidence of experimental cerebral malaria is significantly decreased in Pbyop1∆-infected mice...
May 20, 2020: Molecular Microbiology
https://read.qxmd.com/read/32357859/germline-whole-exome-sequencing-of-a-family-with-appendiceal-mucinous-tumours-presenting-with-pseudomyxoma-peritonei
#17
JOURNAL ARTICLE
Mei Sim Lung, Catherine A Mitchell, Maria A Doyle, Andrew C Lynch, Kylie L Gorringe, David D L Bowtell, Ian G Campbell, Alison H Trainer
BACKGROUND: Familial cases of appendiceal mucinous tumours (AMTs) are extremely rare and the underlying genetic aetiology uncertain. We identified potential predisposing germline genetic variants in a father and daughter with AMTs presenting with pseudomyxoma peritonei (PMP) and correlated these with regions of loss of heterozygosity (LOH) in the tumours. METHODS: Through germline whole exome sequencing, we identified novel heterozygous loss-of-function (LoF) (i...
May 1, 2020: BMC Cancer
https://read.qxmd.com/read/32075961/reep5-depletion-causes-sarco-endoplasmic-reticulum-vacuolization-and-cardiac-functional-defects
#18
JOURNAL ARTICLE
Shin-Haw Lee, Sina Hadipour-Lakmehsari, Harsha R Murthy, Natalie Gibb, Tetsuaki Miyake, Allen C T Teng, Jake Cosme, Jessica C Yu, Mark Moon, SangHyun Lim, Victoria Wong, Peter Liu, Filio Billia, Rodrigo Fernandez-Gonzalez, Igor Stagljar, Parveen Sharma, Thomas Kislinger, Ian C Scott, Anthony O Gramolini
The sarco-endoplasmic reticulum (SR/ER) plays an important role in the development and progression of many heart diseases. However, many aspects of its structural organization remain largely unknown, particularly in cells with a highly differentiated SR/ER network. Here, we report a cardiac enriched, SR/ER membrane protein, REEP5 that is centrally involved in regulating SR/ER organization and cellular stress responses in cardiac myocytes. In vitro REEP5 depletion in mouse cardiac myocytes results in SR/ER membrane destabilization and luminal vacuolization along with decreased myocyte contractility and disrupted Ca2+ cycling...
February 19, 2020: Nature Communications
https://read.qxmd.com/read/31318320/reticulon-4a-promotes-exocytosis-in-mammalian-cells
#19
JOURNAL ARTICLE
Richik Nilay Mukherjee, Daniel L Levy
ER tubules and sheets conventionally correspond to smooth and rough ER, respectively. The ratio of ER tubules-to-sheets varies in different cell types and changes in response to cellular conditions, potentially impacting the functional output of the ER. To directly test if ER morphology impacts vesicular trafficking, we increased the tubule-to-sheet ratio in three different ways, by overexpressing Rtn4a, Rtn4b, or REEP5. Only Rtn4a overexpression increased exocytosis, but not overall levels, of several cell surface and secreted proteins...
July 18, 2019: Molecular Biology of the Cell
https://read.qxmd.com/read/29431105/lrrc10-leucine-rich-repeat-containing-protein-10-and-reep5-receptor-accessory-protein-5-as-novel-regulators-of-cardiac-excitation-contraction-coupling-structure-and-function
#20
EDITORIAL
Nipavan Chiamvimonvat, Long-Sheng Song
No abstract text is available yet for this article.
February 3, 2018: Journal of the American Heart Association
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