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https://www.readbyqxmd.com/read/28212614/transcriptomic-profiling-provides-molecular-insights-into-hydrogen-peroxide-induced-adventitious-rooting-in-mung-bean-seedlings
#1
Shi-Weng Li, Yan Leng, Rui-Fang Shi
BACKGROUND: Hydrogen peroxide (H2O2) has been known to function as a signalling molecule involved in the modulation of various physiological processes in plants. H2O2 has been shown to act as a promoter during adventitious root formation in hypocotyl cuttings. In this study, RNA-Seq was performed to reveal the molecular mechanisms underlying H2O2-induced adventitious rooting. RESULTS: RNA-Seq data revealed that H2O2 treatment greatly increased the numbers of clean reads and expressed genes and abundance of gene expression relative to the water treatment...
February 17, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28211480/visualisation-of-abscisic-acid-and-12-oxo-phytodienoic-acid-in-immature-phaseolus-vulgaris-l-seeds-using-desorption-electrospray-ionisation-imaging-mass-spectrometry
#2
Hirofumi Enomoto, Takuya Sensu, Kei Sato, Futoshi Sato, Thanai Paxton, Emi Yumoto, Koji Miyamoto, Masashi Asahina, Takao Yokota, Hisakazu Yamane
The plant hormone abscisic acid (ABA) and the jasmonic acid related-compound 12-oxo-phytodienoic acid (OPDA) play crucial roles in seed development, dormancy, and germination. However, a lack of suitable techniques for visualising plant hormones has restricted the investigation of their biological mechanisms. In the present study, desorption electrospray ionisation-imaging mass spectrometry (DESI-IMS), a powerful tool for visualising metabolites in biological tissues, was used to visualise ABA and OPDA in immature Phaseolus vulgaris L...
February 17, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28211339/phytoextraction-of-contaminated-urban-soils-by-panicum-virgatum-l-enhanced-with-application-of-a-plant-growth-regulator-bap-and-citric-acid
#3
Matthew Aderholt, Dale L Vogelien, Marina Koether, Sigurdur Greipsson
Lead (Pb) contamination in soil represents a threat to human health. Phytoextraction has gained attention as a potential alternative to traditional remediation methods because of lower cost and minimal soil disruption. The North American native switchgrass (Panicum virgatum L.) was targeted due to its ability to produce high biomass and grow across a variety of ecozones. In this study switchgrass was chemically enhanced with applications of the soil-fungicide benomyl, chelates (EDTA and citric acid), and PGR to optimize phytoextraction of Pb and zinc (Zn) from contaminated urban soils in Atlanta, GA...
February 4, 2017: Chemosphere
https://www.readbyqxmd.com/read/28195221/transcriptome-analysis-around-the-onset-of-strawberry-fruit-ripening-uncovers-an-important-role-of-oxidative-phosphorylation-in-ripening
#4
Qing-Hua Wang, Cheng Zhao, Miao Zhang, Yu-Zhong Li, Yuan-Yue Shen, Jia-Xuan Guo
Although much progress has been made towards understanding the ripening of non-climacteric fruit using the strawberry as a model plant, the defined molecular mechanisms remain unclear. Here, RNA-sequencing was performed using four cDNA libraries around the onset of ripening, and a total of 31,793 unigenes and 335 pathways were annotated including the top five pathways, which were involved in ribosome, spliceosome, protein processing, plant-pathogen interaction and plant hormone signaling, and the important DEGs related to ripening were annotated to be mainly involved in protein translation and processing, sugar metabolism, energy metabolism, phytohormones, antioxidation, pigment and softening, especially finding a decreased trend of oxidative phosphorylation during red-coloring...
February 14, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28192458/transcriptome-analysis-of-hexaploid-hulless-oat-in-response-to-salinity-stress
#5
Bin Wu, Yani Hu, Pengjie Huo, Qian Zhang, Xin Chen, Zongwen Zhang
BACKGROUND: Oat is a cereal crop of global importance used for food, feed, and forage. Understanding salinity stress tolerance mechanisms in plants is an important step towards generating crop varieties that can cope with environmental stresses. To date, little is known about the salt tolerance of oat at the molecular level. To better understand the molecular mechanisms underlying salt tolerance in oat, we investigated the transcriptomes of control and salt-treated oat using RNA-Seq. RESULTS: Using Illumina HiSeq 4000 platform, we generated 72,291,032 and 356,891,432 reads from non-stressed control and salt-stressed oat, respectively...
2017: PloS One
https://www.readbyqxmd.com/read/28184233/overexpression-of-the-novel-arabidopsis-gene-at5g02890-alters-inflorescence-stem-wax-composition-and-affects-phytohormone-homeostasis
#6
Liping Xu, Viktoria Zeisler, Lukas Schreiber, Jie Gao, Kaining Hu, Jing Wen, Bin Yi, Jinxiong Shen, Chaozhi Ma, Jinxing Tu, Tingdong Fu
The cuticle is composed of cutin and cuticular wax. It covers the surfaces of land plants and protects them against environmental damage. At5g02890 encodes a novel protein in Arabidopsis thaliana. In the current study, protein sequence analysis showed that At5g02890 is highly conserved in the Brassicaceae. Arabidopsis lines overexpressing At5g02890 (OE-At5g02890 lines) and an At5g02890 orthologous gene from Brassica napus (OE-Bn1 lines) exhibited glossy stems. Chemical analysis revealed that overexpression of At5g02890 caused significant reductions in the levels of wax components longer than 28 carbons (C28) in inflorescence stems, whereas the levels of wax molecules of chain length C28 or shorter were significantly increased...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28180138/er-microsome-preparation-and-subsequent-iaa-quantification-in-maize-coleoptile-and-primary-root-tissue
#7
Verena Kriechbaumer
Auxin is a major growth hormone in plants and the first plant hormone to be discovered and studied (Darwin and Darwin, 1880). The auxin molecule in plants was first identified as indole-3-acetic acid (IAA) by Kögl et al. (1934). Active research over nearly a decade has shed light on many of the molecular mechanisms of its action but the complexity and redundancy of the auxin biosynthetic network raises questions about control of this system. We have shown that some enzymes involved in the YUCCA-route of auxin biosynthesis are not cytosolic but localised to the endoplasmic reticulum (ER) in both Arabidopsis thaliana (YUCCA4...
May 5, 2016: Bio-protocol
https://www.readbyqxmd.com/read/28176007/functional-characterization-of-agamous-subfamily-members-from-cotton-during-reproductive-development-and-in-response-to-plant-hormones
#8
Stéfanie Menezes de Moura, Sinara Artico, Cássio Lima, Sarah Muniz Nardeli, Ana Berbel, Osmundo Brilhante Oliveira-Neto, Maria Fátima Grossi-de-Sá, Cristina Ferrándiz, Francisco Madueño, Márcio Alves-Ferreira
Expression analysis of the AG -subfamily members from G. hirsutum during flower and fruit development. Reproductive development in cotton, including the fruit and fiber formation, is a complex process; it involves the coordinated action of gene expression regulators, and it is highly influenced by plant hormones. Several studies have reported the identification and expression of the transcription factor family MADS-box members in cotton ovules and fibers; however, their roles are still elusive during the reproductive development in cotton...
February 7, 2017: Plant Reproduction
https://www.readbyqxmd.com/read/28174590/modulating-atdreb1c-expression-improves-drought-tolerance-in-salvia-miltiorrhiza
#9
Tao Wei, Kejun Deng, Qingxia Zhang, Yonghong Gao, Yu Liu, Meiling Yang, Lipeng Zhang, Xuelian Zheng, Chunguo Wang, Zhiwei Liu, Chengbin Chen, Yong Zhang
Dehydration responsive element binding proteins are transcription factors of the plant-specific AP2 family, many of which contribute to abiotic stress responses in several plant species. We investigated the possibility of increasing drought tolerance in the traditional Chinese medicinal herb, Salvia miltiorrhiza, through modulating the transcriptional regulation of AtDREB1C in transgenic plants under the control of a constitutive (35S) or drought-inducible (RD29A) promoter. AtDREB1C transgenic S. miltiorrhiza plants showed increased survival under severe drought conditions compared to the non-transgenic wild-type (WT) control...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28174583/accumulation-and-transport-of-1-aminocyclopropane-1-carboxylic-acid-acc-in-plants-current-status-considerations-for-future-research-and-agronomic-applications
#10
REVIEW
Lisa Vanderstraeten, Dominique Van Der Straeten
1-aminocyclopropane-1-carboxylic acid (ACC) is a non-protein amino acid acting as the direct precursor of ethylene, a plant hormone regulating a wide variety of vegetative and developmental processes. ACC is the central molecule of ethylene biosynthesis. The rate of ACC formation differs in response to developmental, hormonal and environmental cues. ACC can be conjugated to three derivatives, metabolized in planta or by rhizobacteria using ACC deaminase, and is transported throughout the plant over short and long distances, remotely leading to ethylene responses...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28154572/transcriptomic-analysis-implies-that-ga-regulates-sex-expression-via-ethylene-dependent-and-ethylene-independent-pathways-in-cucumber-cucumis-sativus-l
#11
Yan Zhang, Guiye Zhao, Yushun Li, Ning Mo, Jie Zhang, Yan Liang
Sex differentiation of flower buds is an important developmental process that directly affects fruit yield of cucumber (Cucumis sativus L.). Plant hormones, such as gibberellins (GAs) and ethylene can promote development of male and female flowers, respectively, however, the regulatory mechanisms of GA-induced male flower formation and potential involvement of ethylene in this process still remain unknown. In this study, to unravel the genes and gene networks involved in GA-regulated cucumber sexual development, we performed high throughout RNA-Seq analyses that compared the transcriptomes of shoot tips between GA3 treated and untreated gynoecious cucumber plants...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28143977/the-identification-of-phytohormone-receptor-homologs-in-early-diverging-fungi-suggests-a-role-for-plant-sensing-in-land-colonization-by-fungi
#12
Anaïs Hérivaux, Thomas Dugé de Bernonville, Christophe Roux, Marc Clastre, Vincent Courdavault, Amandine Gastebois, Jean-Philippe Bouchara, Timothy Y James, Jean-Paul Latgé, Francis Martin, Nicolas Papon
Histidine kinases (HKs) are among the most prominent sensing proteins studied in the kingdom Fungi. Their distribution and biological functions in early diverging fungi (EDF), however, remain elusive. We have taken advantage of recent genomic resources to elucidate whether relationships between the occurrence of specific HKs in some EDF and their respective habitat/lifestyle could be established. This led to the unexpected discovery of fungal HKs that share a high degree of similarity with receptors for plant hormones (ethylene and cytokinin)...
January 31, 2017: MBio
https://www.readbyqxmd.com/read/28135698/graphene-oxide-sio2-nanocomposite-as-the-adsorbent-for-extraction-and-preconcentration-of-plant-hormones-for-hplc-analysis
#13
Xiaona Zhang, Jiahua Niu, Xiaoting Zhang, Rui Xiao, Minghua Lu, Zongwei Cai
In this research, a modified Quick, Easy, Cheap, Effective, Rugged and Safe (QuEChERS) method based on graphene oxide@SiO2(SiO2@GO) nanocomposite as adsorbent of dispersive solid-phase extraction (dSPE) combined with high performance liquid chromatography (HPLC) for the analysis of four plant hormones in different plants was established. The as-prepared SiO2@GO was characterized by scanning electron microscopy, transmission electron microscopy and infrared spectroscopy. The experimental conditions for dSPE, including the ratio of material to liquid, pH of sample, adsorption and desorption time, desorption temperature as well as desorption solution, were investigated...
January 5, 2017: Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences
https://www.readbyqxmd.com/read/28134593/agrobacteria-enhance-plant-defense-against-root-knot-nematodes-on-tomato
#14
Janja Lamovšek, Barbara Gerič Stare, Irena Mavrič Pleško, Saša Širca, Gregor Urek
The increased incidence of the crown gall disease caused by Agrobacterium tumefaciens has long been associated with activities of root-knot nematodes, Meloidogyne spp. Pot experiments on tomato were designed to assess plant vitality, nematode reproduction and crown gall incidence in combined infection with Agrobacterium and Meloidogyne on tomato roots. Results suggest that tomato plants infected with pathogenic A. tumefaciens two days before the nematodes show enhanced plant defense against M. ethiopica resulting in lower egg and gall counts on roots 45 and 90 days post inoculation (dpi); no significantly enhanced defense was observed when the plant was inoculated with bacteria and nematodes at the same time...
January 30, 2017: Phytopathology
https://www.readbyqxmd.com/read/28125281/strigolactone-signaling-and-evolution
#15
Mark T Waters, Caroline Gutjahr, Tom Bennett, David C Nelson
Strigolactones are a structurally diverse class of plant hormones that control many aspects of shoot and root growth. Strigolactones are also exuded by plants into the rhizosphere, where they promote symbiotic interactions with arbuscular mycorrhizal fungi and germination of root parasitic plants in the Orobanchaceae family. Therefore, understanding how strigolactones are made, transported, and perceived may lead to agricultural innovations as well as a deeper knowledge of how plants function. Substantial progress has been made in these areas over the past decade...
January 11, 2017: Annual Review of Plant Biology
https://www.readbyqxmd.com/read/28124241/protocol-for-extraction-and-isolation-of-brassinosteroids-from-plant-tissues
#16
Danuše Tarkowská, Miroslav Strnad
Brassinosteroids (BRs) are a class of steroid plant hormones that participate with other plant hormones in the regulation of numerous developmental processes, including root and shoot growth, vascular differentiation, fertility, and seed germination. A characteristic feature of all plant hormones, including BRs, is that their concentration is extremely low in plant tissues and, therefore, the methods dealing with their determination belong to ultra-trace analysis, for which very sensitive analytical tools are needed...
2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/28114413/visualization-of-bri1-and-serk3-bak1-nanoclusters-in-arabidopsis-roots
#17
Stefan J Hutten, Danny S Hamers, Marije Aan den Toorn, Wilma van Esse, Antsje Nolles, Christoph A Bücherl, Sacco C de Vries, Johannes Hohlbein, Jan Willem Borst
Brassinosteroids (BRs) are plant hormones that are perceived at the plasma membrane (PM) by the ligand binding receptor BRASSINOSTEROID-INSENSITIVE1 (BRI1) and the co-receptor SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 3/BRI1 ASSOCIATED KINASE 1 (SERK3/BAK1). To visualize BRI1-GFP and SERK3/BAK1-mCherry in the plane of the PM, variable-angle epifluorescence microscopy (VAEM) was employed, which allows selective illumination of a thin surface layer. VAEM revealed an inhomogeneous distribution of BRI1-GFP and SERK3/BAK1-mCherry at the PM, which we attribute to the presence of distinct nanoclusters...
2017: PloS One
https://www.readbyqxmd.com/read/28112451/calreticulin-is-a-fine-tuning-molecule-in-epibrassinolide-induced-apoptosis-through-activating-endoplasmic-reticulum-stress-in-colon-cancer-cells
#18
Pinar Obakan-Yerlikaya, Elif Damla Arisan, Ajda Coker-Gurkan, Kaan Adacan, Utku Özbey, Berna Somuncu, Didem Baran, Narçin Palavan-Ünsal
Epibrassinolide (EBR), a member of brassinostreoids plant hormones with cell proliferation promoting role in plants, is a natural polyhydroxysteroid with structural similarity to steroid hormones of vertebrates. EBR has antiproliferative and apoptosis-inducing effect in various cancer cells. Although EBR has been shown to affect survival and mitochondria-mediated apoptosis pathways in a p53-independent manner, the exact molecular targets of EBR are still under investigation. Our recent SILAC (Stable Isotope Labeling by Amino Acids in Cell Culture) data showed that the most significantly altered protein after EBR treatment was calreticulin (CALR)...
January 23, 2017: Molecular Carcinogenesis
https://www.readbyqxmd.com/read/28107732/comparative-analysis-of-polyamine-metabolism-in-wheat-and-maize-plants
#19
Gabriella Szalai, Katalin Janda, Éva Darkó, Tibor Janda, Violeta Peeva, Magda Pál
In the present work changes in polyamine contents were investigated after various hydroponic polyamine treatments (putrescine, spermidine and spermine at 0.1, 0.3 and 0.5 mM concentrations) in two different crop species, wheat and maize. In contrast to putrescine, higher polyamines (spermidine and spermine) induced concentration-dependent oxidative damage in both crops, resulting in decreased biomass. The unfavourable effects of polyamines were more pronounced in the roots, and maize was more sensitive than wheat...
January 12, 2017: Plant Physiology and Biochemistry: PPB
https://www.readbyqxmd.com/read/28106881/phylogenomics-of-rhodobacteraceae-reveals-evolutionary-adaptation-to-marine-and-non-marine-habitats
#20
Meinhard Simon, Carmen Scheuner, Jan P Meier-Kolthoff, Thorsten Brinkhoff, Irene Wagner-Döbler, Marcus Ulbrich, Hans-Peter Klenk, Dietmar Schomburg, Jörn Petersen, Markus Göker
Marine Rhodobacteraceae (Alphaproteobacteria) are key players of biogeochemical cycling, comprise up to 30% of bacterial communities in pelagic environments and are often mutualists of eukaryotes. As 'Roseobacter clade', these 'roseobacters' are assumed to be monophyletic, but non-marine Rhodobacteraceae have not yet been included in phylogenomic analyses. Therefore, we analysed 106 genome sequences, particularly emphasizing gene sampling and its effect on phylogenetic stability, and investigated relationships between marine versus non-marine habitat, evolutionary origin and genomic adaptations...
January 20, 2017: ISME Journal
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