keyword
https://read.qxmd.com/read/38630629/herb-extracellular-vesicle-chitosan-pegylated-graphene-oxide-conjugate-delivers-estrogen-receptor-%C3%AE-targeting-sirna-to-breast-cancer-cells
#1
JOURNAL ARTICLE
Saroj Saroj, Poornima Us, Sachin Patil, Debashish Paul, Sunita Saha, Akbar Ali, Suchetan Pal, Bimlesh Lochab, Tatini Rakshit
Herb-based extracellular vesicles (EV), inherently replete with bioactive proteins, RNA, lipids, and other medicinal compounds, are noncytotoxic and uniquely capable of cellular delivery to meet the ever-stringent challenges of ongoing clinical applications. EVs are abundant in nature, affordable, and scalable, but they are also incredibly fragile and stuffed with many biomolecules. To address the low drug binding abilities and poor stability of EVs, we demonstrated herb-based EVs (isolated from neem, mint, and curry leaves) conjugated with chitosan (CS) and PEGylated graphene oxide (GP) that led to their transformation into robust and efficient vectors...
April 17, 2024: ACS Applied Bio Materials
https://read.qxmd.com/read/38627930/in-vitro-antibacterial-activity-of-antibiotics-and-plant-essential-oils-against-escherichia-coli-mtcc443-supported-through-the-molecular-docking-and-pharmacokinetics-study
#2
JOURNAL ARTICLE
Saurabh Jain, Adarsh Kumar Shukla, Surbhi Panwar, Rajesh Kumar, Ashwani Kumar
Most of the Escherichia coli turned into serious pathogens or developed antibiotic resistance, mainly due to their ability to show different phenotypic traits. In order to overcome the resistance to these antibiotics, the use of essential oils (EOs) is of great significance against highly pathogenic microorganisms. This study has been made to compare the in vitro antibacterial activity and further validated the same through the molecular docking study of 13 antibiotics such as ciprofloxacin, chloramphenicol, erythromycin, ampicillin, cefotaxime, rifampicin, kanamycin, vancomycin, streptomycin, penicillin, nalidixic acid, trimethoprim, and polymyxin, and 10 EOs such as garlic, tulsi, neem, clove, thyme, peppermint, coriander, tea, lavender, and eucalyptus against the target protein (DNA gyrase) of E...
April 16, 2024: Biotechnology and Applied Biochemistry
https://read.qxmd.com/read/38627816/ccaat-enhancer-binding-protein-delta-activates-vesicle-associated-membrane-protein-3-transcription-to-enhance-chemoresistance-and-extracellular-pd-l1-expression-in-triple-negative-breast-cancer
#3
JOURNAL ARTICLE
Yan Zhao, Yangyang Yu, Xiangmin Li, Ayao Guo
BACKGROUND: Chemoresistance and immunosuppression are two major obstacles in the current anti-cancer treatments. This study investigates the involvements of a CCAAT enhancer binding protein delta (CEBPD)/vesicle associated membrane protein 3 (VAMP3) axis in paclitaxel (PTX) resistance and immune evasion in triple-negative breast cancer (TNBC). METHODS: PTX resistance-related genes were screened by bioinformatics. CEBPD and VAMP3 expression in clinical TNBC samples was examined by immunohistochemistry...
April 16, 2024: Journal of Experimental & Clinical Cancer Research: CR
https://read.qxmd.com/read/38627251/dihydrophenazine-a-multifunctional-new-weapon-that-kills-multidrug-resistant-acinetobacter-baumannii-and-restores-carbapenem-and-oxidative-stress-susceptibilities
#4
JOURNAL ARTICLE
Norhan H Mahdally, Riham A ElShiekh, Bathini Thissera, Ashraf Eltaher, Aya Osama, Maha Mokhtar, Noha M Elhosseiny, Mona T Kashef, Sameh Magdeldin, Ali M El Halawany, Mostafa E Rateb, Ahmed S Attia
AIMS: The current work aims to fully characterize a new antimicrobial agent against Acinetobacter baumannii, which continues to represent a growing threat to healthcare settings worldwide. With minimal treatment options due to the extensive spread of resistance to almost all the available antimicrobials, the hunt for new antimicrobial agents is a high priority. METHODS AND RESULTS: An Egyptian soil-derived bacterium strain NHM-077B proved to be a promising source for a new antimicrobial agent...
April 16, 2024: Journal of Applied Microbiology
https://read.qxmd.com/read/38621554/understanding-the-foam-stability-mechanisms-of-complex-formed-by-soy-protein-isolate-and-different-charged-polysaccharides-air-water-interfacial-behavior-and-rheological-characteristics
#5
JOURNAL ARTICLE
Yameng Han, Ling Zhu, Hui Zhang, Tongtong Liu, Gangcheng Wu
This study evaluated the foaming properties, the dynamic adsorption behavior at the air/water (A/W) interface and the foam rheological characteristics of complexes formed by soy protein isolate (SPI) and different charged polysaccharides, including chitosan (CS), guar gum (GUG) and gellan gum (GEG). The results showed that the SPI/CS10 had the highest initial foam volume (26.67 mL), which were 3.89 %, 100.08 % and 70.19 % higher than that of single SPI, SPI/GUG and SPI/GEG complexes, respectively...
April 13, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38615853/future-proofing-of-chondroitin-sulphate-production-importance-of-sustainability-and-quality-for-the-end-applications
#6
REVIEW
Sushanta Kumar Saha, Yin Zhu, Patrick Murray, Lena Madden
Chondroitin sulphates (CSs) are the most well-known glycosaminoglycans (GAGs) found in any living organism, from microorganisms to invertebrates and vertebrates (including humans), and provide several health benefits. The applications of CSs are numerous including tissue engineering, osteoarthritis treatment, antiviral, cosmetics, and skincare applications. The current commercial production of CSs mostly uses animal, bovine, porcine, and avian tissues as well as marine organisms, marine mammals, sharks, and other fish...
April 12, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38615459/surface-enhanced-raman-scattering-based-identification-of-breast-cancer-progression-using-extracellular-vesicles-derived-integrin-%C3%AE-6%C3%AE-4
#7
JOURNAL ARTICLE
Haozhi Lei, Haoze Wang, Xiqiu Wang, Zeyu Xiao, Tian Tian, Kai Cui
Detection of progression is of great importance to breast cancer treatment and can benefit patients. Limited by current detection technologies and biomarkers, early breast cancer progression diagnosis remains challenging. Researchers have found blood extracellular vesicles (EVs)-derived integrin α6β4 directly facilitate progression in breast cancer, enabling cancer detection. However, EVs size and heterogeneity hinder protein detection, masked by abundant background EVs. Hence, novel tools for efficient detection of EVs with high selectivity and low interference are significantly desired...
April 13, 2024: Talanta
https://read.qxmd.com/read/38615162/activation-of-a1-reactive-astrocytes-in-the-medullary-dorsal-horn-of-rats-participates-in-the-chronification-of-trigeminal-neuralgia
#8
JOURNAL ARTICLE
Xiao Luo, Tong Wan, Zhuofeng Ding, Xinran Hou, Jian Wang, Qulian Guo, Zongbin Song
OBJECTIVES: The activation of astrocytes is an important process in the formation of chronic pain. This study aims to observe the activation of A1 reactive astrocytes in the medullary dorsal horn in the rat model of trigeminal neuralgia, and to explore the mechanism of central sensitization caused by A1 reactive astrocyte. METHODS: The adult male rats were randomly divided into a sham group and a chronic constriction injury of infraorbital nerve (ION-CCI) group...
January 28, 2024: Zhong Nan da Xue Xue Bao. Yi Xue Ban, Journal of Central South University. Medical Sciences
https://read.qxmd.com/read/38609931/deciphering-antifungal-and-antibiofilm-mechanisms-of-isobavachalcone-against-cryptococcus-neoformans-through-rna-seq-and-functional-analyses
#9
JOURNAL ARTICLE
Weidong Qian, Jiaxing Lu, Chang Gao, Qiming Liu, Yongdong Li, Qiao Zeng, Jian Zhang, Ting Wang, Si Chen
Cryptococcus neoformans has been designated as critical fungal pathogens by the World Health Organization, mainly due to limited treatment options and the prevalence of antifungal resistance. Consequently, the utilization of novel antifungal agents is crucial for the effective treatment of C. neoformans infections. This study exposed that the minimum inhibitory concentration (MIC) of isobavachalcone (IBC) against C. neoformans H99 was 8 µg/mL, and IBC dispersed 48-h mature biofilms by affecting cell viability at 16 µg/mL...
April 12, 2024: Microbial Cell Factories
https://read.qxmd.com/read/38609260/screenes-enhancing-non-uniform-sampling-reconstruction-for-symmetrical-nmr-spectroscopy
#10
JOURNAL ARTICLE
Ze Fang, Bo Chen, Chengda Huang, Yifei Yuan, Yao Luo, Liubin Wu, Yida Chen, Yuqing Huang, Yu Yang, Enping Lin, Zhong Chen
BACKGROUND: Symmetrical NMR spectroscopy, such as Total Correlation Spectroscopy (TOCSY) and other homonuclear spectroscopy, displays symmetry in chemical shift but are generally not symmetrical in terms of intensity, which constitutes a pivotal branch of multidimensional NMR spectroscopy and offers a robust tool for elucidating the structures and dynamics of complex samples, particularly in the context of biological macromolecules. Non-Uniform Sampling (NUS) stands as a critical technique for accelerating multidimensional NMR experiments...
May 15, 2024: Analytica Chimica Acta
https://read.qxmd.com/read/38608602/a-promising-food-grade-protector-for-retinyl-acetate-emulsions-with-fibrillated-egg-white
#11
JOURNAL ARTICLE
Xiaomeng Li, Mengyao Wu, Minquan Xia, Mohamed Salama, Haoyang Sun, Lixian Ding, Xi Huang, Dewei Shu, Zhaoxia Cai
This work presents a novel use of fibrous egg white protein (FEWP) in food preservation and nutraceutical applications. In this study, food-grade FEWP was used as an encapsulating material, along with chitosan (CS), to stabilize emulsions. The emulsion system was then used as a delivery system to improve the stability of retinyl acetate (RA). The structural and functional properties, as well as the stability and rheological behavior of the FEWP/CS copolymer, was investigated. The stability of RA-enriched emulsions was also evaluated...
March 29, 2024: Food Chemistry
https://read.qxmd.com/read/38608347/biomarker-and-proteome-analysis-of-milk-from-dairy-cows-with-clinical-mastitis-determining-the-effect-of-different-bacterial-pathogens-on-the-response-to-infection
#12
JOURNAL ARTICLE
Emily L O'Reilly, Lorenzo Viora, Francisco Malcata, P Theo Pepler, Ruth Zadoks, Nicola Brady, Han Quang Hanh, Mark McLaughlin, Anita Horvatic, Andrea Gelemanovic, Josipa Kules, Vladimir Mrljak, P David Eckersall
Antimicrobial usage (AMU) could be reduced by differentiating the causative bacteria in cases of clinical mastitis (CM) as either Gram-positive or Gram-negative bacteria or identifying whether the case is culture-negative (no growth, NG) mastitis. Immunoassays for biomarker analysis and a Tandem Mass Tag (TMT) proteomic investigation were employed to identify differences between samples of milk from cows with CM caused by different bacteria. A total of 94 milk samples were collected from cows diagnosed with CM across seven farms in Scotland, categorized by severity as mild (score 1), moderate (score 2), or severe (score 3)...
March 29, 2024: Research in Veterinary Science
https://read.qxmd.com/read/38608190/effect-of-tokenization-on-transformers-for-biological-sequences
#13
JOURNAL ARTICLE
Edo Dotan, Gal Jaschek, Tal Pupko, Yonatan Belinkov
MOTIVATION: Deep-learning models are transforming biological research, including many bioinformatics and comparative genomics algorithms, such as sequence alignments, phylogenetic tree inference, and automatic classification of protein functions. Among these deep-learning algorithms, models for processing natural languages, developed in the natural language processing (NLP) community, were recently applied to biological sequences. However, biological sequences are different from natural languages, such as English, and French, in which segmentation of the text to separate words is relatively straightforward...
April 12, 2024: Bioinformatics
https://read.qxmd.com/read/38607030/cockayne-syndrome-patient-ipsc-derived-brain-organoids-and-neurospheres-show-early-transcriptional-dysregulation-of-biological-processes-associated-with-brain-development-and-metabolism
#14
JOURNAL ARTICLE
Leon-Phillip Szepanowski, Wasco Wruck, Julia Kapr, Andrea Rossi, Ellen Fritsche, Jean Krutmann, James Adjaye
Cockayne syndrome (CS) is a rare hereditary autosomal recessive disorder primarily caused by mutations in Cockayne syndrome protein A (CSA) or B (CSB). While many of the functions of CSB have been at least partially elucidated, little is known about the actual developmental dysregulation in this devasting disorder. Of particular interest is the regulation of cerebral development as the most debilitating symptoms are of neurological nature. We generated neurospheres and cerebral organoids utilizing Cockayne syndrome B protein (CSB)-deficient induced pluripotent stem cells derived from two patients with distinct severity levels of CS and healthy controls...
March 28, 2024: Cells
https://read.qxmd.com/read/38606936/gene-delivery-and-analysis-of-optogenetic-induction-of-lytic-cell-death
#15
JOURNAL ARTICLE
Teak-Jung Oh, Bryan Gworek, Amna Mehfooz, Kai Zhang
Necroptosis is a form of inflammatory lytic cell death involving active cytokine production and plasma membrane rupture. Progression of necroptosis is tightly regulated in time and space, and its signaling outcomes can shape the local inflammatory environment of cells and tissues. Pharmacological induction of necroptosis is well established, but the diffusive nature of chemical death inducers makes it challenging to study cell-cell communication precisely during necroptosis. Receptor-interacting protein kinase 3, or RIPK3, is a crucial signaling component of necroptosis, acting as a crucial signaling node for both canonical and non-canonical necroptosis...
April 2024: Current protocols
https://read.qxmd.com/read/38605704/ribosomal-mutations-enable-a-switch-between-high-fitness-and-high-stress-resistance-in-listeria-monocytogenes
#16
JOURNAL ARTICLE
Jeroen Koomen, Xuchuan Ma, Alberto Bombelli, Marcel H Tempelaars, Sjef Boeren, Marcel H Zwietering, Heidy M W den Besten, Tjakko Abee
Multiple stress resistant variants of Listeria monocytogenes with mutations in rpsU encoding ribosomal protein RpsU have previously been isolated after a single exposure to acid stress. These variants, including L. monocytogenes LO28 variant V14 with a complete deletion of the rpsU gene, showed upregulation of the general stress sigma factor Sigma B-mediated stress resistance genes and had a lower maximum specific growth rate than the LO28 WT, signifying a trade-off between stress resistance and fitness. In the current work V14 has been subjected to an experimental evolution regime, selecting for higher fitness in two parallel evolving cultures...
2024: Frontiers in Microbiology
https://read.qxmd.com/read/38605139/the-soluble-pro-renin-receptor-promotes-a-preeclampsia-like-phenotype-both-in-vitro-and-in-vivo
#17
JOURNAL ARTICLE
Lachlan G Schofield, Sarah J Delforce, Jennifer C Pryor, Saije K Endacott, Eugenie R Lumbers, Sarah A Marshall, Kirsty G Pringle
Preeclampsia is classified as new-onset hypertension coupled with gross endothelial dysfunction. Placental (pro)renin receptor ((P)RR) and plasma soluble (P)RR (s(P)RR) are elevated in patients with preeclampsia. Thus, we aimed to interrogate the role (P)RR may play in the pathogenesis of preeclampsia. Human uterine microvascular endothelial cells (HUtMECs, n = 4) were cultured with either; vehicle (PBS), 25-100 nM recombinant s(P)RR, or 10 ng/ml TNF-a (positive control) for 24 h...
April 11, 2024: Hypertension Research: Official Journal of the Japanese Society of Hypertension
https://read.qxmd.com/read/38603515/unveiling-the-spatiotemporal-and-dose-responses-within-a-single-live-cancer-cell-to-photoswitchable-upconversion-nanoparticle-therapeutics-using-hybrid-hyperspectral-stimulated-raman-scattering-and-transient-absorption-microscopy
#18
JOURNAL ARTICLE
Le Xin, Zichao Luo, Xiaogang Liu, Zhiwei Huang
Photodynamic therapy (PDT) provides an alternative approach to targeted cancer treatment, but the therapeutic mechanism of advanced nanodrugs applied to live cells and tissue is still not well understood. Herein, we employ the hybrid hyperspectral stimulated Raman scattering (SRS) and transient absorption (TA) microscopy developed for real-time in vivo visualization of the dynamic interplay between the unique photoswichable lanthanide-doped upconversion nanoparticle-conjugated rose bengal and triphenylphosphonium (LD-UCNP@CS-Rb-TPP) probe synthesized and live cancer cells...
April 11, 2024: Analytical Chemistry
https://read.qxmd.com/read/38601957/optimization-of-ultrasound-assisted-microwave-encapsulation-of-peanut-oil-in-protein-polysaccharide-complex
#19
JOURNAL ARTICLE
Sachin S Bhuva, Navnit K Dhamsaniya, Gopal V Marviya
RESEARCH BACKGROUND: Peanut oil ( Arachis hypogaea L.) is a rich source of unsaturated fatty acids. Its consumption has been reported to have biological effects on human health. Unsaturated, especially polyunsaturated fatty acids (PUFA) found in peanut oil are highly susceptible to oxidation, leading to the formation of harmful compounds during processing and storage. The aim of this study is to prevent the oxidation of peanut oil PUFA by encapsulation in a protein-polysaccharide complex using microwave drying...
March 2024: Food Technology and Biotechnology
https://read.qxmd.com/read/38600235/transcription-coupled-repair-of-dna-protein-cross-links-depends-on-csa-and-csb
#20
JOURNAL ARTICLE
Christopher J Carnie, Aleida C Acampora, Aldo S Bader, Chimeg Erdenebat, Shubo Zhao, Elnatan Bitensky, Diana van den Heuvel, Avital Parnas, Vipul Gupta, Giuseppina D'Alessandro, Matylda Sczaniecka-Clift, Pedro Weickert, Fatih Aygenli, Maximilian J Götz, Jacqueline Cordes, Isabel Esain-Garcia, Larry Melidis, Annelotte P Wondergem, Simon Lam, Maria S Robles, Shankar Balasubramanian, Sheera Adar, Martijn S Luijsterburg, Stephen P Jackson, Julian Stingele
Covalent DNA-protein cross-links (DPCs) are toxic DNA lesions that block replication and require repair by multiple pathways. Whether transcription blockage contributes to the toxicity of DPCs and how cells respond when RNA polymerases stall at DPCs is unknown. Here we find that DPC formation arrests transcription and induces ubiquitylation and degradation of RNA polymerase II. Using genetic screens and a method for the genome-wide mapping of DNA-protein adducts, DPC sequencing, we discover that Cockayne syndrome (CS) proteins CSB and CSA provide resistance to DPC-inducing agents by promoting DPC repair in actively transcribed genes...
April 10, 2024: Nature Cell Biology
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