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https://www.readbyqxmd.com/read/29036464/the-mimic-code-repository-enabling-reproducibility-in-critical-care-research
#1
Alistair E W Johnson, David J Stone, Leo A Celi, Tom J Pollard
Objective: Lack of reproducibility in medical studies is a barrier to the generation of a robust knowledge base to support clinical decision-making. In this paper we outline the Medical Information Mart for Intensive Care (MIMIC) Code Repository, a centralized code base for generating reproducible studies on an openly available critical care dataset. Materials and Methods: Code is provided to load the data into a relational structure, create extractions of the data, and reproduce entire analysis plans including research studies...
September 27, 2017: Journal of the American Medical Informatics Association: JAMIA
https://www.readbyqxmd.com/read/29035316/non-traditional-risk-factors-of-albuminuria-in-the-pediatric-population-a-scoping-review
#2
REVIEW
Erick Sierra-Diaz, Alfredo de Jesus Celis-de la Rosa, Felipe Lozano-Kasten, Alejandro Bravo-Cuellar, Mariana Garcia-Gutierrez, Hernandez-Flores Georgina
The presence of albumin in urine has been used for more than four decades as a marker of renal and cardiovascular damage. Most of the information on this marker is related to adults. The prevalence of albuminuria in the pediatric population has been reported as being 2.2-12.8% in some countries. Most research in this field is related to albuminuria and diseases, such as diabetes and hypertension. Using the methodology described by Arksey and O'Malley in 2005, a scoping review was carried out to show that the presence of albumin in urine in the pediatric population might be associated with environmental, demographic, congenital, infectious, and non-infectious factors...
October 16, 2017: International Journal of Environmental Research and Public Health
https://www.readbyqxmd.com/read/29024497/a-mission-oriented-approach-to-cancer-in-europe-a-joint-mission-vision-2030
#3
Julio E Celis, Dainius Pavalkis
By combining innovative prevention and treatment strategies in a sustainable state-of-the-art virtual European cancer centre/infrastructure, it will be possible by 2030 to achieve a long-term survival of 3 out of 4 cancer patients in countries with well-developed healthcare systems. Furthermore, the proposed concerted actions will pave the way to handling the economic and social inequalities in countries with less developed systems. These efforts will also ensure that in the long-run, science-driven and social innovations reach patients across the healthcare systems in Europe...
October 11, 2017: Molecular Oncology
https://www.readbyqxmd.com/read/29020281/association-of-walking-pace-and-handgrip-strength-with-all-cause-cardiovascular-and-cancer-mortality-a-uk-biobank-observational-study
#4
Thomas Yates, Francesco Zaccardi, Nafeesa N Dhalwani, Melanie J Davies, Kishan Bakrania, Carlos A Celis-Morales, Jason M R Gill, Paul W Franks, Kamlesh Khunti
Aims: To quantify the association of self-reported walking pace and handgrip strength with all-cause, cardiovascular, and cancer mortality. Methods and results: A total of 230 670 women and 190 057 men free from prevalent cancer and cardiovascular disease were included from UK Biobank. Usual walking pace was self-defined as slow, steady/average or brisk. Handgrip strength was assessed by dynamometer. Cox-proportional hazard models were adjusted for social deprivation, ethnicity, employment, medications, alcohol use, diet, physical activity, and television viewing time...
August 21, 2017: European Heart Journal
https://www.readbyqxmd.com/read/29019927/mediterranean-diet-adherence-and-genetic-background-roles-within-a-web-based-nutritional-intervention-the-food4me-study
#5
Rodrigo San-Cristobal, Santiago Navas-Carretero, Katherine M Livingstone, Carlos Celis-Morales, Anna L Macready, Rosalind Fallaize, Clare B O'Donovan, Christina P Lambrinou, George Moschonis, Cyril F M Marsaux, Yannis Manios, Miroslaw Jarosz, Hannelore Daniel, Eileen R Gibney, Lorraine Brennan, Christian A Drevon, Thomas E Gundersen, Mike Gibney, Wim H M Saris, Julie A Lovegrove, Keith Grimaldi, Laurence D Parnell, Jildau Bouwman, Ben Van Ommen, John C Mathers, J Alfredo Martinez
Mediterranean Diet (MedDiet) adherence has been proven to produce numerous health benefits. In addition, nutrigenetic studies have explained some individual variations in the response to specific dietary patterns. The present research aimed to explore associations and potential interactions between MedDiet adherence and genetic background throughout the Food4Me web-based nutritional intervention. Dietary, anthropometrical and biochemical data from volunteers of the Food4Me study were collected at baseline and after 6 months...
October 11, 2017: Nutrients
https://www.readbyqxmd.com/read/29017891/a-pilot-study-of-an-accelerometer-equipped-smartphone-to-monitor-older-adults-with-cancer-receiving-chemotherapy-in-mexico
#6
Enrique Soto-Perez-De-Celis, Heeyoung Kim, María Patricia Rojo-Castillo, Can-Lan Sun, Yanin Chavarri-Guerra, Ana Patricia Navarrete-Reyes, James R Waisman, José Alberto Avila-Funes, Álvaro Aguayo, Arti Hurria
OBJECTIVES: Older adults with cancer in developing countries face challenges accessing healthcare due to a lack of personnel and infrastructure. A decline in physical activity (defined as a decrease in the number of daily steps) may be a novel method for the timely detection of toxicity in older adults receiving chemotherapy in resource-constrained settings. MATERIALS AND METHODS: In this feasibility study, patients aged ≥65years starting first-line chemotherapy for solid tumors were given a smartphone with a pedometer application...
October 7, 2017: Journal of Geriatric Oncology
https://www.readbyqxmd.com/read/29016188/design-of-two-multiplex-pcr-assays-for-serotyping-shigella-flexneri
#7
Claudia A van der Ploeg, Ariel D Rogé, Ximena L Bordagorría, Maria T de Urquiza, Ana B Celi Castillo, Susana B Bruno
Shigella flexneri is a major health problem in developing countries. There are 19 serotypes recognized based on O-antigen structure and its typing is important for epidemiological purposes. However, the diversity of serotypes and the difficulties presented by phenotypic serotyping, for example, unavailable antisera for less common antigens, require the implementation of molecular techniques. In this study, we developed two multiplex PCR assays targeting the O-antigen synthesis genes and the O-antigen modification genes, for the rapid identification of S...
October 10, 2017: Foodborne Pathogens and Disease
https://www.readbyqxmd.com/read/28991196/phaseolus-acutifolius-lectin-fractions-exhibit-apoptotic-effects-on-colon-cancer-preclinical-studies-using-dimethilhydrazine-or-azoxi-methane-as-cancer-induction-agents
#8
Ulisses Moreno-Celis, Josué López-Martínez, Alejandro Blanco-Labra, Ricardo Cervantes-Jiménez, Laura Elena Estrada-Martínez, Alejandro Eduardo García-Pascalin, María De Jesús Guerrero-Carrillo, Adriana Jheny Rodríguez-Méndez, Carmen Mejía, Roberto Augusto Ferríz-Martínez, Teresa García-Gasca
Phaseolus acutifolius (Tepary bean) lectins have been studied as cytotoxic molecules on colon cancer cells. The toxicological profile of a Tepary bean lectin fraction (TBLF) has shown low toxicity in experimental animals; exhibiting anti-nutritional effects such as a reduction in body weight gain and a decrease in food intake when using a dose of 50 mg/kg on alternate days for six weeks. Taking this information into account, the focus of this work was to evaluate the effect of the TBLF on colon cancer using 1,2-dimethylhydrazine (DMH) or azoxy-methane/dextran sodium sulfate (AOM/DSS) as colon cancer inductors...
October 8, 2017: Molecules: a Journal of Synthetic Chemistry and Natural Product Chemistry
https://www.readbyqxmd.com/read/28988018/corpus-callosum-diffusion-abnormalities-in-refractory-epilepsy-associated-with-hippocampal-sclerosis
#9
Katarina P Lyra, Khallil T Chaim, Claudia C Leite, Eun J Park, Celi S Andrade, Valmir Passarelli, Rosa M F Valério, Carmen L Jorge, Luiz H M Castro, Maria C G Otaduy
OBJECTIVES: To detect by diffusion tensor imaging (DTI) the extent of microstructural integrity changes of the corpus callosum (CC) in patients with hippocampal sclerosis (HS) and to evaluate possible association with clinical characteristics. METHODS: Fourty-two patients with temporal lobe epilepsy (TLE) and HS and 30 control subjects were studied with DTI. We grouped patients according to lesion side (left or right) HS. Mean diffusivity (MD), fractional anisotropy (FA), radial (RD) and axial diffusivity (AD) were extracted from five segments in CC midsagittal section obtained by automatic segmentation...
September 20, 2017: Epilepsy Research
https://www.readbyqxmd.com/read/28987028/fuel-reduction-management-alters-plant-composition-carbon-and-nitrogen-pools-and-soil-thaw-in-alaskan-boreal-forest
#10
April M Melvin, Gerardo Celis, Jill F Johnstone, A David McGuire, Helene Genet, Edward A G Schuur, T Scott Rupp, Michelle C Mack
Increasing wildfire activity in Alaska's boreal forests has led to greater fuel-reduction management. Management has been implemented to reduce wildfire spread, but the ecological impacts of these practices are poorly known. We quantified the effects of hand-thinning and shearblading on above- and belowground stand characteristics, plant species composition, carbon (C) and nitrogen (N) pools, and soil thaw across 19 black spruce (Picea mariana) dominated sites in interior Alaska treated 2-12 years prior to sampling...
October 7, 2017: Ecological Applications: a Publication of the Ecological Society of America
https://www.readbyqxmd.com/read/28986505/associations-between-diabetes-and-both-cardiovascular-disease-and-all-cause-mortality-are-modified-by-grip-strength-evidence-from-uk-biobank-a-prospective-population-based-cohort-study
#11
Carlos A Celis-Morales, Fanny Petermann, Li Hui, Donald M Lyall, Stamatina Iliodromiti, James McLaren, Jana Anderson, Paul Welsh, Daniel F Mackay, Jill P Pell, Naveed Sattar, Jason M R Gill, Stuart R Gray
OBJECTIVE: Grip strength and diabetes are predictors of mortality and cardiovascular disease (CVD), but whether these risk factors interact to predispose to adverse health outcomes is unknown. This study determined the interactions between diabetes and grip strength and their association with health outcomes. RESEARCH DESIGN AND METHODS: We undertook a prospective, general population cohort study by using UK Biobank. Cox proportional hazards models were used to explore the associations between both grip strength and diabetes and the outcomes of all-cause mortality and CVD incidence/mortality as well as to test for interactions between diabetes and grip strength...
October 6, 2017: Diabetes Care
https://www.readbyqxmd.com/read/28981995/plasma-cholesteryl-ester-fatty-acids-do-not-mediate-the-association-of-ethnicity-with-type-2-diabetes-results-from-the-helius-study
#12
Mirthe Muilwijk, Carlos Celis-Morales, Mary Nicolaou, Marieke B Snijder, Jason M R Gill, Irene G M van Valkengoed
SCOPE: Ethnic minority groups have a higher risk of type 2 diabetes (T2D) than the host population. Our aim was to identify whether plasma cholesteryl ester fatty acids (CEFA) mediate the ethnic differences in type 2 diabetes. METHODS AND RESULTS: We included 202 Dutch, 206 South-Asian Surinamese, 205 African Surinamese, 215 Turkish and 213 Moroccan origin participants of the HELIUS study (Amsterdam, the Netherlands). Logistic regression was used to determine the associations between plasma CEFA and T2D...
October 5, 2017: Molecular Nutrition & Food Research
https://www.readbyqxmd.com/read/28977545/higher-levels-of-self-reported-sitting-time-is-associated-with-higher-risk-of-type-2-diabetes-independent-of-physical-activity-in-chile
#13
Ximena Díaz-Martínez, Lewis Steell, María Adela Martinez, Ana María Leiva, Carlos Salas-Bravo, Ana María Labraña, Eliana Duran, Carlos Cristi-Montero, Katherine M Livingstone, Alex Garrido-Méndez, Cristian Alvarez, Felipe Poblete-Valderrama, María Luisa Zagalaz, Pedro Valdivia-Moral, Liliana Cuadra, Natalia Ulloa, Naomi D Willis, Carlos A Celis-Morales
Background: Sitting behaviours have increased markedly during the last two decades in Chile. However, their associations with health outcomes such as diabetes have not been reported. Therefore, the aim of this study was to investigate the independent association of self-reported sitting time with diabetes-related markers and diabetes prevalence in Chile. Methods: This cross-sectional study included participants (aged ≥18 years) from the Chilean National Health Survey 2009-10 (n = 4457)...
July 28, 2017: Journal of Public Health
https://www.readbyqxmd.com/read/28977515/active-commuting-is-associated-with-a-lower-risk-of-obesity-diabetes-and-metabolic-syndrome-in-chilean-adults
#14
Lewis Steell, Alex Garrido-Méndez, Fanny Petermann, Ximena Díaz-Martínez, María Adela Martínez, Ana María Leiva, Carlos Salas-Bravo, Cristian Alvarez, Rodrigo Ramirez-Campillo, Carlos Cristi-Montero, Fernando Rodríguez, Felipe Poblete-Valderrama, Pedro Delgado Floody, Nicolás Aguilar-Farias, Naomi D Willis, Carlos A Celis-Morales
Background: There is limited evidence on how active commuting is associated with health benefits in developing countries. The aim of this study therefore was to investigate the associations between active commuting and markers of adiposity and cardiometabolic risk in the Chilean adult population. Methods: In total, 5157 participants from the Chilean National Health Survey 2009-10 were included in this cross-sectional study. Active commuting was measured using the Global Physical Activity Questionnaire (GPAQ v2)...
July 28, 2017: Journal of Public Health
https://www.readbyqxmd.com/read/28959251/lipid-metabolic-versatility-in-malassezia-spp-yeasts-studied-through-metabolic-modeling
#15
Sergio Triana, Hans de Cock, Robin A Ohm, Giovanna Danies, Han A B Wösten, Silvia Restrepo, Andrés F González Barrios, Adriana Celis
Malassezia species are lipophilic and lipid-dependent yeasts belonging to the human and animal microbiota. Typically, they are isolated from regions rich in sebaceous glands. They have been associated with dermatological diseases such as seborrheic dermatitis, pityriasis versicolor, atopic dermatitis, and folliculitis. The genomes of Malassezia globosa, Malassezia sympodialis, and Malassezia pachydermatis lack the genes related to fatty acid synthesis. Here, the lipid-synthesis pathways of these species, as well as of Malassezia furfur, and of an atypical M...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28954927/rapid-antigen-tests-for-dengue-virus-serotypes-and-zika-virus-in-patient-serum
#16
Irene Bosch, Helena de Puig, Megan Hiley, Marc Carré-Camps, Federico Perdomo-Celis, Carlos F Narváez, Doris M Salgado, Dewahar Senthoor, Madeline O'Grady, Elizabeth Phillips, Ann Durbin, Diana Fandos, Hikaru Miyazaki, Chun-Wan Yen, Margarita Gélvez-Ramírez, Rajas V Warke, Lucas S Ribeiro, Mauro M Teixeira, Roque P Almeida, José E Muñóz-Medina, Juan E Ludert, Mauricio L Nogueira, Tatiana E Colombo, Ana C B Terzian, Patricia T Bozza, Andrea S Calheiros, Yasmine R Vieira, Giselle Barbosa-Lima, Alexandre Vizzoni, José Cerbino-Neto, Fernando A Bozza, Thiago M L Souza, Monique R O Trugilho, Ana M B de Filippis, Patricia C de Sequeira, Ernesto T A Marques, Tereza Magalhaes, Francisco J Díaz, Berta N Restrepo, Katerine Marín, Salim Mattar, Daniel Olson, Edwin J Asturias, Mark Lucera, Mohit Singla, Guruprasad R Medigeshi, Norma de Bosch, Justina Tam, Jose Gómez-Márquez, Charles Clavet, Luis Villar, Kimberly Hamad-Schifferli, Lee Gehrke
The recent Zika virus (ZIKV) outbreak demonstrates that cost-effective clinical diagnostics are urgently needed to detect and distinguish viral infections to improve patient care. Unlike dengue virus (DENV), ZIKV infections during pregnancy correlate with severe birth defects, including microcephaly and neurological disorders. Because ZIKV and DENV are related flaviviruses, their homologous proteins and nucleic acids can cause cross-reactions and false-positive results in molecular, antigenic, and serologic diagnostics...
September 27, 2017: Science Translational Medicine
https://www.readbyqxmd.com/read/28943061/nutritional-strategies-in-ruminants-a-lifetime-approach
#17
REVIEW
Joseph McGrath, Stéphane M Duval, Luis F M Tamassia, Maik Kindermann, René T Stemmler, Vinícius N de Gouvea, Tiago S Acedo, Irmgard Immig, Scot N Williams, Pietro Celi
This review examines the role of nutritional strategies to improve lifetime performance in ruminants. Strategies to increase ruminants' productive longevity by means of nutritional interventions provide the opportunity not only to increase their lifetime performances and their welfare, but also to decrease their environmental impact. This paper will also address how such nutritional interventions can increase herd efficiency and farm profitability. The key competencies reviewed in this article are redox balance, skeletal development and health, nutrient utilization and sustainability, which includes rearing ruminants without antibiotics and methane mitigation...
September 12, 2017: Research in Veterinary Science
https://www.readbyqxmd.com/read/28940244/demodicosis-in-two-patients-with-a-previous-history-of-langerhans-cell-histiocytosis
#18
Marcial Álvarez-Salafranca, Asunción Vicente, Carolina Prat Torres, Andrea Combalia, Manuel Monsonís, Veronica Paola Celis-Passini, María Antonia González-Enseñat
Demodex mites are commensal organisms rarely found in healthy children. Human demodicosis can be classified as a primary or a secondary form. The secondary form in children usually affects severely immunodepressed children. To our knowledge, this is the first report of human demodicosis associated with Langerhans cell histiocytosis. These cases show that this skin disorder can occur months after completing chemotherapy, without recurrence of the systemic disease.
September 21, 2017: Pediatric Dermatology
https://www.readbyqxmd.com/read/28939891/differential-proteomics-identifies-reticulocalbin-3-as-a-novel-negative-mediator-of-collagen-production-in-human-cardiac-fibroblasts
#19
Ernesto Martínez-Martínez, Jaime Ibarrola, Amaya Fernández-Celis, Enrique Santamaria, Joaquín Fernández-Irigoyen, Patrick Rossignol, Frederic Jaisser, Natalia López-Andrés
Cardiac fibrosis is characterized by an excessive accumulation of extracellular matrix components, including collagens. Galectin-3 (Gal-3) and Cardiotrophin-1 (CT-1) are two profibrotic molecules that mediate Aldosterone (Aldo)-induced cardiac fibrosis. However the underlying mechanisms are not well defined. Our aim is to characterize changes in the proteome of human cardiac fibroblasts treated with Aldo, Gal-3 or CT-1 to identify new common proteins that might be new therapeutic targets in cardiac fibrosis...
September 22, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28937499/prognostic-factors-for-permanent-work-disability-in-patients-with-rheumatoid-arthritis-who-received-combination-therapy-of-conventional-synthetic-disease-modifying-antirheumatic-drugs-a-retrospective-cohort-study
#20
M Luisa Vazquez-Villegas, Jorge I Gamez-Nava, Alfredo Celis, Dalia Sanchez-Mosco, Liliana F de la Cerda-Trujillo, Jessica D Murillo-Vazquez, A Miriam Saldaña-Cruz, Miriam F Alcaraz-Lopez, Valeria Diaz-Rizo, Jose Alvarez-Nemegyei, Mario H Cardiel, Laura Gonzalez-Lopez
BACKGROUND: There is limited information about the factors related with the development of long-term permanent work disability (PWD) in rheumatoid arthritis (RA) treated with a combination of conventional synthetic disease-modifying antirheumatic drugs (cs-DMARDs). OBJECTIVE: The aim of this study was to evaluate incidence and factors associated with the development of PWD in RA treated with combination therapy using conventional synthetic cs-DMARDs. METHODS: We assessed in multivariate models the effect of clinical and demographic factors in the development of PWD in a long-term retrospective cohort of 180 workers with RA who were treated with a combination of cs-DMARDs...
September 21, 2017: Journal of Clinical Rheumatology: Practical Reports on Rheumatic & Musculoskeletal Diseases
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