keyword
https://read.qxmd.com/read/38548679/in-silico-identification-of-novel-pre-microrna-genes-in-rift-valley-fever-virus-suggest-new-pathomechanisms-for-embryo-fetal-dysgenesis
#21
JOURNAL ARTICLE
Balal Sadeghi, Martin H Groschup, Martin Eiden
MicroRNAs (miRNAs) are small non-coding RNAs that regulate the post-transcriptional expression of target genes. Virus-encoded miRNAs play an important role in the replication of viruses, modulate gene expression in both the virus and host, and affect their persistence and immune evasion in hosts. This renders viral miRNAs as potential targets for therapeutic applications, especially against pathogenic viruses that infect humans and animals. Rift Valley fever virus (RVFV) is a mosquito-borne zoonotic RNA virus that causes severe disease in both humans and livestock...
December 2024: Virulence
https://read.qxmd.com/read/38544392/genetic-factors-and-micrornas-in-the-development-of-gallbladder-cancer-the-prospective-clinical-targets
#22
JOURNAL ARTICLE
Roshani Quraishi, Medha Dwivedi, Monika Moitra, Somali Sanyal, Manish Dwivedi
Gallbladder cancer (GBC) is an uncommon condition in which malignant (cancer) cells are detected in gallbladder tissue. Cancer is often triggered when normal cells turn malignant and begin to spread. Cancer can also be caused by genetic anomalies that result in uncontrolled cell proliferation and tumor development. MicroRNAs (also known as miRNAs or miRs) are a group of small, endogenous, non-coding RNAs of 19-23 nucleotides in length, which play a key role in post-transcriptional gene regulation. These miRNAs serve as negative gene regulators by supervising target genes and regulating biological processes, including cell proliferation, migration, invasion, and apoptosis...
March 27, 2024: Current Drug Targets
https://read.qxmd.com/read/38543491/altered-plasma-microrna-signature-in-hospitalized-covid-19-patients-requiring-oxygen-support
#23
JOURNAL ARTICLE
Sandra Franco, Lourdes Mateu, Raquel Pluvinet, Jose Francisco Sanchez-Herrero, Ruth Toledo, Lauro Sumoy, Marta Massanella, Miguel Angel Martinez
To discover potential micro(mi)RNA biomarkers of SARS-CoV-2 infection and disease progression, large-scale deep-sequencing analysis of small RNA expression was performed on plasma samples from 40 patients hospitalized for SARS-CoV-2 infection (median 13.50 [IQR 9-24] days since symptoms initiation) and 21 healthy noninfected individuals. A total of 1218 different miRNAs were identified. When compared with healthy noninfected donors, SARS-CoV-2-infected patients showed significantly (fold change [FC] > 1...
February 21, 2024: Microorganisms
https://read.qxmd.com/read/38542261/absolute-quantification-of-selected-micrornas-expression-in-endometrial-cancer-by-digital-pcr
#24
JOURNAL ARTICLE
Anna Bogaczyk, Natalia Potocka, Sylwia Paszek, Marzena Skrzypa, Alina Zuchowska, Michał Kośny, Marta Kluz, Izabela Zawlik, Tomasz Kluz
MicroRNAs (miRNA) are involved in the process of carcinogenesis, including the development of endometrial cancer (EC). This study aimed to investigate the association between the expression of three miRNAs (miR-21-5p, miR-205-5p, and miR-222-3p) in endometrial cancer tissues. In addition, the stability of expression of SNORD48 and U6, which were initially planned to be used as reference miRNAs for normalization, was investigated. Endometrial tissue was obtained from 111 patients with EC during hysterectomy and from 19 patients undergoing surgery for uterine fibroids or pelvic organ prolapse as a control group without neoplastic changes...
March 14, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38540782/a-quest-for-survival-a-review-of-the-early-biomarkers-of-pancreatic-cancer-and-the-most-effective-approaches-at-present
#25
REVIEW
Muhammad Begawan Bestari, Ignatius Ronaldi Joewono, Ari Fahrial Syam
Pancreatic cancer (PC) is the most lethal type of cancer; it has the lowest 5-year survival rate among all other types of cancers. More than half of PC cases are diagnosed at an advanced stage due to PC's insidious and non-specific symptoms. Surgery remains the most efficacious treatment option currently available, but only 10-20% of PC cases are resectable upon diagnosis. As of now, the sole biomarker approved by the United States Food and Drug Administration (US-FDA) for PC is carbohydrate antigen 19-9 (CA19-9); however, its use is limited for early diagnosis...
March 19, 2024: Biomolecules
https://read.qxmd.com/read/38540418/transcriptome-analysis-of-mirna-and-mrna-in-porcine-skeletal-muscle-following-glaesserella-parasuis-challenge
#26
JOURNAL ARTICLE
Huanhuan Zhou, Xuexue Chen, Xiangwei Deng, Xiaoyu Zhang, Xinqi Zeng, Ke Xu, Hongbo Chen
Glaesserella parasuis ( G. parasuis ) causes systemic infection in pigs, but its effects on skeletal muscle and underlying mechanisms are poorly understood. We investigated G. parasuis infection in colostrum-deprived piglets, observing decreased daily weight gain and upregulation of inflammatory factors in skeletal muscle. Muscle fiber area and diameter were significantly reduced in the treated group ( n = 3) compared to the control group ( n = 3), accompanied by increased expression of FOXO1 , FBXO32 , TRIM63 , CTSL , and BNIP3 ...
March 13, 2024: Genes
https://read.qxmd.com/read/38539931/micrornas-and-their-associated-genes-regulating-the-acrosome-reaction-in-sperm-of-high-versus-low-fertility-holstein-bulls
#27
JOURNAL ARTICLE
Vanmathy Kasimanickam, Ramanathan Kasimanickam
Bioinformatics envisage experimental data as illustrated biological networks, exploring roles of individual proteins and their interactions with other proteins in regulation of biological functions. The objective was to identify differentially expressed miRNAs and their associated genes regulating the acrosome reaction in capacitated sperm of high- compared to low-fertility dairy bulls and to elucidate biological functional pathways using a systems biology approach, featuring miRNA-mRNA cluster analysis. Categorized bovine-specific miRNAs ( n = 84) were analyzed by RT-PCR; 19 were differentially expressed in high- compared to low-fertility sperm ( p ≤ 0...
March 8, 2024: Animals: An Open Access Journal From MDPI
https://read.qxmd.com/read/38536780/thc-and-sperm-impact-on-fertilization-capability-pre-implantation-in-vitro-development-and-epigenetic-modifications
#28
JOURNAL ARTICLE
Alexander G Kuzma-Hunt, Reem Sabry, Ola S Davis, Vivien B Truong, Jibran Y Khokhar, Laura A Favetta
Global cannabis use has risen 23% since 2010, with 209 million reported users, most of whom are males of reproductive age. Delta-9-tetrahydrocannabinol (THC), the main psychoactive phytocannabinoid in cannabis, disrupts pro-homeostatic functions of the endocannabinoid system (ECS) within the male reproductive system. The ECS is highly involved in regulating morpho-functional and intrinsic sperm features that are required for fertilization and pre-implantation embryo development. Previous work by our group demonstrated that THC altered sperm capacitation and the transcriptome, including several fertility-associated microRNAs (miRs)...
2024: PloS One
https://read.qxmd.com/read/38533493/suppressor-of-cytokine-signaling-3-expression-and-its-regulation-in-relation-to-inflammation-in-chronic-obstructive-pulmonary-disease
#29
JOURNAL ARTICLE
Mariaenrica Tinè, Elisabetta Balestro, Sara Carpi, Tommaso Neri, Davide Biondini, Maria Conti, Alvise Casara, Nicol Bernardinello, Elisabetta Cocconcelli, Graziella Turato, Simonetta Baraldo, Alessandro Celi, Paolo Spagnolo, Manuel G Cosio, Marina Saetta, Erica Bazzan
BACKGROUND: The family of Suppressor of Cytokine Signaling (SOCS) acts as a controller of the duration and intensity of cytokine function by negatively regulating the JAK-STAT signaling pathway. SOCS' role in inflammatory diseases in animal models is well demonstrated. However, its role in the development of human disease is still under investigation. SOCS3 plays an important role in tumor development where its downregulation has been implicated in the pathogenesis of various solid tumors such as triple-negative breast cancer...
2024: Frontiers in Immunology
https://read.qxmd.com/read/38530109/expression-of-aberrant-micrornas-and-p16ink4a-associated-with-hpv-6-11-16-18-31-33-35-42-43-44-45-52-53-and-56-in-oral-dysplasia-and-squamous-cell-carcinoma-a-retrospective-study
#30
JOURNAL ARTICLE
Layla Hafed, Olfat Shaker, Ghada Ayeldeen, Hatem Amer, Gamilah Al-Qadhi
OBJECTIVE: A few studies indicate that human papillomavirus (HPV) induces aberrant expression of microRNAs (miRNAs) and correlate this with p16INK4a in oral dysplasia (OD) and oral squamous cell carcinoma (OSCC). Therefore, this study aimed to evaluate the expression of miRNA-21, miRNA-22, and miRNA-224 by q-PCR and the p16 INK4a by immunohistochemical (IHC) as markers for HPV-positive OSCC and OD in comparison to controls as miRNA expression can be altered by the HPV oncogenes and hence can be used as a biomarker for HPV positive cases...
March 26, 2024: Türk Patoloji Dergisi
https://read.qxmd.com/read/38528369/r2d-ligase-unveiling-a-novel-dna-ligase-with-surprising-dna-to-rna-ligation-activity
#31
JOURNAL ARTICLE
Sigurd Eidem Gundesø, Ulli Rothweiler, Elise Heimland, Yvonne Piotrowski, Inger Kristine Rødum, Jenny Johansson Söderberg, Ildikó Moustaka Gábor, Terese Solstad, Adele Williamson, Olav Lanes, Bernd Ketelsen Striberny
DNA ligases catalyze bond formation in the backbone of nucleic acids via the formation of a phosphodiester bond between adjacent 5' phosphates and 3' hydroxyl groups on one strand of the duplex. While DNA ligases preferentially ligate single breaks in double-stranded DNA (dsDNA), they are capable of ligating a multitude of other nucleic acid substrates like blunt-ended dsDNA, TA overhangs, short overhangs and various DNA-RNA hybrids. Here we report a novel DNA ligase from Cronobacter phage CR 9 (R2D Ligase) with an unexpected DNA-to-RNA ligation activity...
March 2024: Biotechnology Journal
https://read.qxmd.com/read/38528189/identification-of-hdac9-and-arrdc4-as-potential-biomarkers-and-targets-for-treatment-of-type-2-diabetes
#32
JOURNAL ARTICLE
Jing Liu, Lingzhen Meng, Zhihong Liu, Ming Lu, Ruiying Wang
We aimed to identify the key potential insulin resistance (IR)-related genes and investigate their correlation with immune cell infiltration in type 2 diabetes (T2D). The GSE78721 dataset (68 diabetic patients and 62 controls) was downloaded from the Gene Expression Omnibus database and utilized for single-sample gene set enrichment analysis. IR-related genes were obtained from the Comparative Toxicology Genetics Database, and the final IR-differentially expressed genes (DEGs) were screened by intersecting with the DEGs obtained from the GSE78721 datasets...
March 25, 2024: Scientific Reports
https://read.qxmd.com/read/38526289/neuroprotective-effects-of-g9a-inhibition-through-modulation-of-peroxisome-proliferator-activator-receptor-gamma-dependent-pathways-by-mir-128
#33
JOURNAL ARTICLE
Aina Bellver-Sanchis, Pedro A Ávila-López, Iva Tic, David Valle-García, Marta Ribalta-Vilella, Luis Labrador, Deb Ranjan Banerjee, Ana Guerrero, Gemma Casadesus, Coralie Poulard, Mercè Pallàs, Christian Griñán-Ferré
JOURNAL/nrgr/04.03/01300535-202419110-00033/figure1/v/2024-03-08T184507Z/r/image-tiff Dysregulation of G9a, a histone-lysine N-methyltransferase, has been observed in Alzheimer's disease and has been correlated with increased levels of chronic inflammation and oxidative stress. Likewise, microRNAs are involved in many biological processes and diseases playing a key role in pathogenesis, especially in multifactorial diseases such as Alzheimer's disease. Therefore, our aim has been to provide partial insights into the interconnection between G9a, microRNAs, oxidative stress, and neuroinflammation...
November 1, 2024: Neural Regeneration Research
https://read.qxmd.com/read/38526276/nlrp3-1-mediated-pyroptosis-beneficial-clues-for-the-development-of-novel-therapies-for-alzheimer-s-disease
#34
JOURNAL ARTICLE
Bo Hu, Jiaping Zhang, Jie Huang, Bairu Luo, Xiansi Zeng, Jinjing Jia
The inflammasome is a multiprotein complex involved in innate immunity that mediates the inflammatory response leading to pyroptosis, which is a lytic, inflammatory form of cell death. There is accumulating evidence that nucleotide-binding domain and leucine-rich repeat pyrin domain containing 3 (NLRP3) inflammasome-mediated microglial pyroptosis and NLRP1 inflammasome-mediated neuronal pyroptosis in the brain are closely associated with the pathogenesis of Alzheimer's disease. In this review, we summarize the possible pathogenic mechanisms of Alzheimer's disease, focusing on neuroinflammation...
November 1, 2024: Neural Regeneration Research
https://read.qxmd.com/read/38512819/integrated-microrna-and-proteome-analysis-of-cancer-datasets-with-mopc
#35
JOURNAL ARTICLE
Marta Lovino, Elisa Ficarra, Loredana Martignetti
MicroRNAs (miRNAs) are small molecules that play an essential role in regulating gene expression by post-transcriptional gene silencing. Their study is crucial in revealing the fundamental processes underlying pathologies and, in particular, cancer. To date, most studies on miRNA regulation consider the effect of specific miRNAs on specific target mRNAs, providing wet-lab validation. However, few tools have been developed to explain the miRNA-mediated regulation at the protein level. In this paper, the MoPC computational tool is presented, that relies on the partial correlation between mRNAs and proteins conditioned on the miRNA expression to predict miRNA-target interactions in multi-omic datasets...
2024: PloS One
https://read.qxmd.com/read/38512253/citations-of-microrna-biomarker-articles-that-were-retracted-a-systematic-review
#36
JOURNAL ARTICLE
Hongmei Zhu, Yongliang Jia, Siu-Wai Leung
IMPORTANCE: Retraction is a tool that journals can use to deter research misconduct and alert their audience to erroneous content published in the journals. However, retracted articles may continue to damage science if they are still cited as legitimate articles. OBJECTIVE: To characterize patterns of postretraction citations, particularly in microRNA biomarker research, a field with one of the highest rates of retraction. EVIDENCE REVIEW: Retracted scientific articles on microRNAs were retrieved from PubMed, Web of Science, and Retraction Watch between database inception and July 17, 2021, according to preestablished search strategies...
March 4, 2024: JAMA Network Open
https://read.qxmd.com/read/38510743/the-interplay-between-sars-cov-2-infection-related-cardiovascular-diseases-and-depression-common-mechanisms-shared-symptoms
#37
REVIEW
Ana Gonjilashvili, Sophio Tatishvili
In 2020 the World Health organization announced a pandemic due to the outbreak of the Coronavirus disease 19. Pneumonia was the most common manifestation of the Sars-Cov-2 infection, however, clinical papers describe Sars-Cov-2 associated cardiovascular pathologies, such as ACS, myopericarditis, cardiomyopathies, dysrhythmias, as leading causes of increased morbidity and mortality. The short and long term prognosis of Sars-Cov-2-related cardiovascular diseases was defined not only by the disease severity itself but also by associated conditions and complications, among which mental health issues (stress, depression and anxiety) have a negative impact...
February 2024: American heart journal plus: cardiology research and practice
https://read.qxmd.com/read/38508753/-use-of-crispr-cas9-with-homology-directed-repair-hdr-to-gene-edit-topoisomerase-ii%C3%AE-in-human-leukemia-k562-cells-generation-of-a-resistance-phenotype
#38
JOURNAL ARTICLE
Jessika Carvajal-Moreno, Xinyi Wang, Victor A Hernandez, Milon Mondal, Xinyu Zhao, Jack C Yalowich, Terry S Elton
DNA topoisomerase IIβ (TOP2β/180; 180 kDa) is a nuclear enzyme that regulates DNA topology by generation of short-lived DNA double-strand breaks primarily during transcription. TOP2β/180 can be a target for DNA damage-stabilizing anticancer drugs, whose efficacy is often limited by chemoresistance. Our laboratory previously demonstrated reduced levels of TOP2β/180 (and the paralog TOP2α/170) in an acquired etoposide-resistant K562 clonal cell line, K/VP.5 in part due to overexpression of microRNA-9-3p/5p impacting post-transcriptional events...
March 20, 2024: Journal of Pharmacology and Experimental Therapeutics
https://read.qxmd.com/read/38505169/topical-delivery-of-microrna-125b-by-framework-nucleic-acids-for-psoriasis-treatment
#39
JOURNAL ARTICLE
Yunfeng Han, Long Xi, Fang Leng, Chenjie Xu, Ying Zheng
PURPOSE: Psoriasis is a chronic and recurrent inflammatory dermatitis characterized by T cell imbalance and abnormal keratinocyte proliferation. MicroRNAs (miRNAs) hold promise as therapeutic agents for this disease; however, their clinical application is hindered by poor stability and limited skin penetration. This study demonstrates the utilization of Framework Nucleic Acid (FNA) for the topical delivery of miRNAs in psoriasis treatment. METHODS: By utilizing miRNA-125b as the model drug, FNA-miR-125b was synthesized via self-assembly...
2024: International Journal of Nanomedicine
https://read.qxmd.com/read/38502673/bk-zero-isoform-hek293-stably-transfected-cell-lines-differing-3-utrs-to-assess-mir-9-regulation
#40
JOURNAL ARTICLE
Katherine Cordero Padilla, Gerardo Alvarado Monefeldt, Adriel Guevárez Galán, Hector G Marrero, Mario E Lloret-Torres, Cristina Velázquez-Marrero
Research has identified the large conductance voltage- and calcium-activated potassium channel (BK) as a key regulator of neuronal excitability genetically associated to behavioral alcohol tolerance. Sensitivity to ethanol at the molecular level is characterized by acute potentiation of channel activity. BK isoforms show variations in alcohol sensitivity and are differentially distributed on the plasma membrane surface in response to prolonged exposure. MicroRNA (MiRNA) targeting of alcohol-sensitive isoforms coupled with active internalization of BK channels in response to ethanol are believed to be key in establishing homeostatic adaptations that produce persistent changes within the plasma membrane of neurons...
2024: PloS One
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