keyword
MENU ▼
Read by QxMD icon Read
search

Erf1

keyword
https://www.readbyqxmd.com/read/29325104/eukaryotic-translational-termination-efficiency-is-influenced-by-the-3-nucleotides-within-the-ribosomal-mrna-channel
#1
Andrew G Cridge, Caillan Crowe-McAuliffe, Suneeth F Mathew, Warren P Tate
When a stop codon is at the 80S ribosomal A site, there are six nucleotides (+4 to +9) downstream that are inferred to be occupying the mRNA channel. We examined the influence of these downstream nucleotides on translation termination success or failure in mammalian cells at the three stop codons. The expected hierarchy in the intrinsic fidelity of the stop codons (UAA>UAG>UGA) was observed, with highly influential effects on termination readthrough mediated by nucleotides at position +4 and position +8...
January 9, 2018: Nucleic Acids Research
https://www.readbyqxmd.com/read/29298914/atomic-mutagenesis-of-stop-codon-nucleotides-reveals-the-chemical-prerequisites-for-release-factor-mediated-peptide-release
#2
Thomas Philipp Hoernes, Nina Clementi, Michael Andreas Juen, Xinying Shi, Klaus Faserl, Jessica Willi, Catherina Gasser, Christoph Kreutz, Simpson Joseph, Herbert Lindner, Alexander Hüttenhofer, Matthias David Erlacher
Termination of protein synthesis is triggered by the recognition of a stop codon at the ribosomal A site and is mediated by class I release factors (RFs). Whereas in bacteria, RF1 and RF2 promote termination at UAA/UAG and UAA/UGA stop codons, respectively, eukaryotes only depend on one RF (eRF1) to initiate peptide release at all three stop codons. Based on several structural as well as biochemical studies, interactions between mRNA, tRNA, and rRNA have been proposed to be required for stop codon recognition...
January 3, 2018: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/29238352/overexpression-of-erf1-v-from-haynaldia-villosa-can-enhance-the-resistance-of-wheat-to-powdery-mildew-and-increase-the-tolerance-to-salt-and-drought-stresses
#3
Liping Xing, Zhaocan Di, Wenwu Yang, Jiaqian Liu, Meina Li, Xiaojuan Wang, Chaofan Cui, Xiaoyun Wang, Xiue Wang, Ruiqi Zhang, Jin Xiao, Aizhong Cao
The APETALA 2/Ethylene-responsive element binding factor (AP2/ERF) transcription factor gene family is widely involved in the biotic and abiotic stress regulation. Haynaldia villosa (VV, 2n = 14), a wild species of wheat, is a potential gene pool for wheat improvement. H. villosa confers high resistance to several wheat diseases and high tolerance to some abiotic stress. In this study, ERF1-V, an ethylene-responsive element-binding factor gene of the AP2/ERF transcription factor gene family from wild H. villosa, was cloned and characterized...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/29193778/a-substitution-mutation-in-ospelota-confers-bacterial-blight-resistance-by-activating-the-salicylic-acid-pathway
#4
Xiao-Bo Zhang, Bao-Hua Feng, Hui-Mei Wang, Xia Xu, Yong-Feng Shi, Yan He, Zheng Chen, Atul Prakash Sathe, Lei Shi, Jian-Li Wu
We previously reported a spotted-leaf mutant pelota (originally termed HM47) in rice displaying arrested growth and enhanced resistance to multiple races of Xanthomonas oryzae pv. oryzae. Here, we report the map-based cloning of the causal gene OsPELOTA (originally termed splHM47 ). We identified a single base substitution from T to A at position 556 in the coding sequence of OsPELOTA, effectively mutating Phe to Ile at position 186 in the translated protein sequence. Both functional complementation and over-expression could rescue the spotted-leaf phenotype...
November 29, 2017: Journal of Integrative Plant Biology
https://www.readbyqxmd.com/read/29139201/defining-the-protein-complexome-of-translation-termination-factor-erf1-identification-of-four-novel-erf1-containing-complexes-that-range-from-20s-to-57s-in-size
#5
Clyde L Denis, Roy Richardson, Shiwha Park, Chongxu Zhang, Wen Xi, Thomas M Laue, Xin Wang
The eukaryotic eRF1 translation termination factor plays an important role in recognizing stop codons and initiating the end to translation. However, which exact complexes contain eRF1 and at what abundance is not clear. We have used analytical ultracentrifugation with fluorescent detection system to identify the protein complexome of eRF1 in the yeast Saccharomyces cerevisiae. In addition to eRF1 presence in translating polysomes, we found that eRF1 associated with five other macromolecular complexes: 77S, 57S, 39S, 28S, and 20S in size...
November 15, 2017: Proteins
https://www.readbyqxmd.com/read/29127299/origin-of-the-omnipotence-of-eukaryotic-release-factor-1
#6
Christoffer Lind, Ana Oliveira, Johan Åqvist
Termination of protein synthesis on the ribosome requires that mRNA stop codons are recognized with high fidelity. This is achieved by specific release factor proteins that are very different in bacteria and eukaryotes. Hence, while there are two release factors with overlapping specificity in bacteria, the single omnipotent eRF1 release factor in eukaryotes is able to read all three stop codons. This is particularly remarkable as it is able to select three out of four combinations of purine bases in the last two codon positions...
November 10, 2017: Nature Communications
https://www.readbyqxmd.com/read/29096083/gene-network-underlying-the-response-of-harvested-pepper-to-chilling-stress
#7
Sun-Young Shin, Me-Hea Park, Ji-Weon Choi, Ji-Gang Kim
Cold storage is an effective postharvest control strategy to maintain the freshness of vegetables by suppressing respiration. However, subtropical plants including pepper (Capsicum annuum L.) undergo chilling injury. To better understand the molecular mechanisms involved in preventing chilling injury, transcriptome profiling analysis of peppers stored in a cold chamber and treated with 50μM methyl jasmonate (MeJA) and 1μLL(-1) 1-methylcyclopropene as an ethylene reaction inhibitor was performed. A total of 240, 470, and 290 genes were upregulated and 184, 291, and 219 genes down-regulated in cold-, MeJA- and 1-methylcyclopropene-treated peppers, respectively...
October 28, 2017: Journal of Plant Physiology
https://www.readbyqxmd.com/read/28954403/textile-hemp-vs-salinity-insights-from-a-targeted-gene-expression-analysis
#8
Gea Guerriero, Marc Behr, Jean-Francois Hausman, Sylvain Legay
Soil salinity is a serious threat to agriculture, because it compromises biomass production and plant productivity, by negatively affecting the vegetative growth and development of plants. Fiber crops like textile hemp (Cannabis sativa L.) are important natural resources that provide, sustainably, both cellulosic and woody fibers for industry. In this work, the response to salinity (200 mM NaCl) of a fiber variety of hemp (Santhica 27) was studied using quantitative real-time PCR. The responses of plantlets aged 15 days were analyzed by microscopy and by measuring the changes in expression of cell wall-related genes, as well as in the general response to exogenous constraints...
September 26, 2017: Genes
https://www.readbyqxmd.com/read/28934298/transcriptome-analysis-of-callery-pear-pyrus-calleryana-reveals-a-comprehensive-signalling-network-in-response-to-alternaria-alternata
#9
Jialiang Kan, Tingli Liu, Na Ma, Hui Li, Xiaogang Li, Jinyan Wang, Baolong Zhang, Youhong Chang, Jing Lin
The pear is an important temperate fruit worldwide that is produced by a group of species in the genus Pyrus. Callery pear (Pyrus calleryana Decne) is characterized by high resistance to multiple diseases, good adaptability, and high ornamental value, and is therefore widely planted in pear orchards for edible fruit production or as stock. Plant pathogens are a major threat to pear yield. Black spot disease, caused by the filamentous fungus Alternaria alternata, is one of the most serious diseases in pear. Elucidation of resistant genes to black spot disease is extremely important for understanding the underlying mechanisms as well as for the development of resistant cultivars...
2017: PloS One
https://www.readbyqxmd.com/read/28889908/resistance-of-fusarium-poae-in-arabidopsis-leaves-requires-mainly-functional-ja-and-et-signaling-pathways
#10
María Inés Dinolfo, Eliana Castañares, Sebastián A Stenglein
Fusarium poae has been considered as a minor species among those that cause the FHB disease but in recent years several researchers have documented a high frequency of occurrence in several crops. We evaluated the ability of F. poae to produce symptoms in A. thaliana leaves. Moreover, we analyzed the defense of A. thaliana against F. poae using SA, JA, and ET mutants and we monitored the expression level of genes involved in the main signaling pathways related to plant defense. Symptoms were observed in the inoculated leaves demonstrating the ability of F...
October 2017: Fungal Biology
https://www.readbyqxmd.com/read/28878788/transcriptomic-analysis-reveals-candidate-genes-for-female-sterility-in-pomegranate-flowers
#11
Lina Chen, Jie Zhang, Haoxian Li, Juan Niu, Hui Xue, Beibei Liu, Qi Wang, Xiang Luo, Fuhong Zhang, Diguang Zhao, Shangyin Cao
Pomegranate has two types of flowers on the same plant: functional male flowers (FMF) and bisexual flowers (BF). BF are female-fertile flowers that can set fruits. FMF are female-sterile flowers that fail to set fruit and that eventually drop. The putative cause of pomegranate FMF female sterility is abnormal ovule development. However, the key stage at which the FMF pomegranate ovules become abnormal and the mechanism of regulation of pomegranate female sterility remain unknown. Here, we studied ovule development in FMF and BF, using scanning electron microscopy to explore the key stage at which ovule development was terminated and then analyzed genes differentially expressed (differentially expressed genes - DEGs) between FMF and BF to investigate the mechanism responsible for pomegranate female sterility...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28649000/suppression-of-the-mads-box-gene-slmbp8-accelerates-fruit-ripening-of-tomato-solanum-lycopersicum
#12
Wencheng Yin, Zongli Hu, Baolu Cui, Xuhu Guo, Jingtao Hu, Zhiguo Zhu, Guoping Chen
MADS-box genes encode important transcription factors that are involved in many biological processes of plants, including fruit ripening. In our research, a MADS-box gene, SlMBP8, was identified, and its tissue-specific expression profiles were analysed. SlMBP8 was highly expressed in fruits of the B+4 stage, in senescent leaves and in sepals. To further characterize its function, an RNA interference (RNAi) expression vector of SlMBP8 was constructed and transferred into tomato. In the transgenic plants, the ripening of fruits was shortened by 2-4 days compared to that of wild type...
September 2017: Plant Physiology and Biochemistry: PPB
https://www.readbyqxmd.com/read/28626940/overexpression-of-hevea-brasiliensis-ethylene-response-factor-hberf-ixc5-enhances-growth-and-tolerance-to-abiotic-stress-and-affects-laticifer-differentiation
#13
Retno Lestari, Maryannick Rio, Florence Martin, Julie Leclercq, Natthakorn Woraathasin, Sandrine Roques, Florence Dessailly, Anne Clément-Vidal, Christine Sanier, Denis Fabre, Sémi Melliti, Sony Suharsono, Pascal Montoro
Ethylene response factor 1 (ERF1) is an essential integrator of the jasmonate and ethylene signalling pathways coordinating a large number of genes involved in plant defences. Its orthologue in Hevea brasiliensis, HbERF-IXc5, has been assumed to play a major role in laticifer metabolism and tolerance to harvesting stress for better latex production. This study sets out to establish and characterize rubber transgenic lines overexpressing HbERF-IXc5. Overexpression of HbERF-IXc5 dramatically enhanced plant growth and enabled plants to maintain some ecophysiological parameters in response to abiotic stress such as water deficit, cold and salt treatments...
June 19, 2017: Plant Biotechnology Journal
https://www.readbyqxmd.com/read/28620159/main-and-epistatic-loci-studies-in-soybean-for-sclerotinia-sclerotiorum-resistance-reveal-multiple-modes-of-resistance-in-multi-environments
#14
Tara C Moellers, Arti Singh, Jiaoping Zhang, Jae Brungardt, Mehdi Kabbage, Daren S Mueller, Craig R Grau, Ashish Ranjan, Damon L Smith, R V Chowda-Reddy, Asheesh K Singh
Genome-wide association (GWAS) and epistatic (GWES) studies along with expression studies in soybean [Glycine max (L.) Merr.] were leveraged to dissect the genetics of Sclerotinia stem rot (SSR) [caused by Sclerotinia sclerotiorum (Lib.) de Bary], a significant fungal disease causing yield and quality losses. A large association panel of 466 diverse plant introduction accessions were phenotyped in multiple field and controlled environments to: (1) discover sources of resistance, (2) identify SNPs associated with resistance, and (3) determine putative candidate genes to elucidate the mode of resistance...
June 15, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28576486/construction-of-an-inducible-stable-cell-line-for-efficient-incorporation-of-unnatural-amino-acids-in-mammalian-cells
#15
Ziwei Zhang, Huan Xu, Longlong Si, Yi Chen, Bo Zhang, Yan Wang, Yiming Wu, Xueying Zhou, Lihe Zhang, Demin Zhou
The genetic incorporation of unnatural amino acids (Uaas) with defined properties into proteins at designated sites represents an extremely powerful tool for protein engineering. However, the efficient incorporation of Uaas in response to the amber stop codon in mammalian cells remains a substantial challenge due to the competition from release factor 1(RF1). Addressing this challenge will greatly broaden the power and scope of this technology. Here, we chose the eRF1 mutant, which can selectively enhance Uaa incorporation in response to the amber codon without increasing the readthrough of the opal and ochre codons...
August 5, 2017: Biochemical and Biophysical Research Communications
https://www.readbyqxmd.com/read/28567122/a-functional-role-for-the-monomethylated-gln-51-and-lys-53-residues-of-the-49ggqtk53-motif-of-el42-from-human-80s-ribosomes
#16
Stéphanie Eustache, Jean-Bernard Créchet, Tahar Bouceba, Jun-Ichi Nakayama, Mayo Tanaka, Mieko Suzuki, Anne Woisard, Pierre Tuffery, Soria Baouz, Codjo Hountondji
BACKGROUND: We have previously demonstrated that the eukaryote-specific ribosomal protein eL42 of the human 80S ribosome contains seven monomethylated residues, among which are the Gln-51 and Lys-53 residues contained in the 47GFGGQTK53 sequence conserved in all eukaryotic 80S ribosomes. This sequence contains the methylated and universally conserved GGQ motif common for all class-1 translation termination factors responsible for stop codon recognition and for triggering the hydrolysis of the P site-bound peptidyl-tRNA...
2017: Open Biochemistry Journal
https://www.readbyqxmd.com/read/28552050/readthrough-of-scn5a-nonsense-mutations-r1623x-and-s1812x-question-gene-therapy-in-brugada-syndrome
#17
Siyong Teng, Jian Huang, Zhan Gao, Jie Hao, Yuejin Yang, Shu Zhang, Jielin Pu, Rutai Hui, Yongjian Wu, Zheng Fan
PURPOSE: Readthrough of nonsense mutation are used as gene-specific treatment in some genetic disease. Response to readthrough treatment is determined by readthrough efficiency of various nonsense mutations. In this manuscript, we aimed to explore the harmful effect of nonsense mutation suppressions. METHODS: HEK293 cells were transfected with two SCN5A (encode cardiac Na+ channel) nonsense mutations, p.R1623X and p.S1812X. We applied two readthrough-enhancing methods (either aminoglycosides or by a siRNA targeting eukaryotic release factor eRF3a (a GTPase that binds eRF1)) to suppress these SCN5A nonsense mutations...
May 28, 2017: Current Gene Therapy
https://www.readbyqxmd.com/read/28542545/a-first-insight-into-the-involvement-of-phytohormones-pathways-in-coffee-resistance-and-susceptibility-to-colletotrichum-kahawae
#18
Inês Diniz, Andreia Figueiredo, Andreia Loureiro, Dora Batista, Helena Azinheira, Vítor Várzea, Ana Paula Pereira, Elijah Gichuru, Pilar Moncada, Leonor Guerra-Guimarães, Helena Oliveira, Maria do Céu Silva
Understanding the molecular mechanisms underlying coffee-pathogen interactions are of key importance to aid disease resistance breeding efforts. In this work the expression of genes involved in salicylic acid (SA), jasmonic acid (JA) and ethylene (ET) pathways were studied in hypocotyls of two coffee varieties challenged with the hemibiotrophic fungus Colletotrichum kahawae, the causal agent of Coffee Berry Disease. Based on a cytological analysis, key time-points of the infection process were selected and qPCR was used to evaluate the expression of phytohormones biosynthesis, reception and responsive-related genes...
2017: PloS One
https://www.readbyqxmd.com/read/28467675/ribosome-bound-pub1-modulates-stop-codon-decoding-during-translation-termination-in-yeast
#19
Valery N Urakov, Olga V Mitkevich, Irina V Safenkova, Michael D Ter-Avanesyan
In eukaryotes, termination of translation is controlled by polypeptide chain release factors eRF1 and eRF3, of which the former recognizes nonsense codons, while the latter interacts with eRF1 and stimulates polypeptide release from the ribosome in a GTP- dependent manner, and ABCE1, which facilitates ribosome recycling. In this work, we demonstrate that Pub1, a yeast protein known to be involved in stress granule formation, regulation of gene expression, and organization of the tubulin cytoskeleton, also plays a role in translation termination...
June 2017: FEBS Journal
https://www.readbyqxmd.com/read/28457996/exploring-contacts-of-erf1-with-the-3-terminus-of-the-p-site-trna-and-mrna-stop-signal-in-the-human-ribosome-at-various-translation-termination-steps
#20
Konstantin N Bulygin, Dmitri M Graifer, Codjo Hountondji, Ludmila Yu Frolova, Galina G Karpova
Here we employed site-directed cross-linking with the application of tRNA and mRNA analogues bearing an oxidized ribose at the 3'-terminus to investigate mutual arrangement of the main components of translation termination complexes formed on the human 80S ribosome bound with P site deacylated tRNA using eRF1•eRF3•GTP or eRF1 alone. In addition, we applied a model complex obtained in the same way with eRF1•eRF3•GMPPNP. We found that eRF3 content in the complexes with GTP and GMPPNP is similar, proving that eRF3 does not leave the ribosome after GTP hydrolysis...
July 2017: Biochimica et Biophysica Acta
keyword
keyword
8036
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"