keyword
https://read.qxmd.com/read/38617216/phototactic-preference-and-its-genetic-basis-in-the-planulae-of-the-colonial-hydrozoan-hydractinia-symbiolongicarpus
#1
Sydney Birch, Lindy McGee, Curtis Provencher, Christine DeMio, David Plachetzki
BACKGROUND: Marine organisms with sessile adults commonly possess motile larval stages that make settlement decisions based on integrating environmental sensory cues. Phototaxis, the movement toward or away from light, is a common behavioral characteristic of aquatic and marine metazoan larvae, and of algae, protists, and fungi. In cnidarians, behavioral genomic investigations of motile planulae larvae have been conducted in anthozoans (corals and sea anemones) and scyphozoans (true jellyfish), but such studies are presently lacking in hydrozoans...
April 1, 2024: bioRxiv
https://read.qxmd.com/read/38579109/similar-binding-modes-of-cgmp-analogues-limit-selectivity-in-modulating-retinal-cng-channels-via-the-cyclic-nucleotide-binding-domain
#2
JOURNAL ARTICLE
Palina Pliushcheuskaya, Sandeep Kesh, Emma Kaufmann, Sophie Wucherpfennig, Frank Schwede, Georg Künze, Vasilica Nache
In treating retinitis pigmentosa , a genetic disorder causing progressive vision loss, selective inhibition of rod cyclic nucleotide-gated (CNG) channels holds promise. Blocking the increased Ca2+ -influx in rod photoreceptors through CNG channels can potentially delay disease progression and improve the quality of life for patients. To find inhibitors for rod CNG channels, we investigated the impact of 16 cGMP analogues on both rod and cone CNG channels using the patch-clamp technique. Although modifications at the C8 position of the guanine ring did not change the ligand efficacy, modifications at the N1 and N2 positions rendered cGMP largely ineffective in activating retinal CNG channels...
April 5, 2024: ACS Chemical Neuroscience
https://read.qxmd.com/read/38531629/whole-genome-sequencing-of-allotetraploid-bermudagrass-reveals-the-origin-of-cynodon-and-candidate-genes-for-salt-tolerance
#3
JOURNAL ARTICLE
Huan Wang, Tilin Fang, Xiaoning Li, Yan Xie, Wei Wang, Tao Hu, David Kudrna, Erick Amombo, Yanling Yin, Shugao Fan, Zhiyun Gong, Yicheng Huang, Chunjiao Xia, Jianwei Zhang, Yanqi Wu, Jinmin Fu
Bermudagrass (Cynodon dactylon) is a globally distributed, extensively used warm-season turf and forage grass with high tolerance to salinity and drought stress in alkaline environments. However, the origin of the species and genetic mechanisms for salinity tolerance in the species are basically unknown. Accordingly, we set out to study evolution divergence events in the Cynodon genome and to identify genes for salinity tolerance. We developed a 604.0 Mb chromosome-level polyploid genome sequence for bermudagrass 'A12359' (n = 18)...
March 26, 2024: Plant Journal
https://read.qxmd.com/read/37905307/structural-basis-of-properties-mechanisms-and-channelopathy-of-cyclic-nucleotide-gated-channels
#4
REVIEW
Zhengshan Hu, Jian Yang
Recent years have seen an outpouring of atomic or near atomic resolution structures of cyclic nucleotide-gated (CNG) channels, captured in closed, transition, pre-open, partially open, and fully open states. These structures provide unprecedented molecular insights into the activation, assembly, architecture, regulation, and channelopathy of CNG channels, as well as mechanistic explanations for CNG channel biophysical and pharmacological properties. This article summarizes recent advances in CNG channel structural biology, describes key structural features and elements, and illuminates a detailed conformational landscape of activation by cyclic nucleotides...
December 2023: Channels
https://read.qxmd.com/read/37832386/involvement-of-cyclic-nucleotide-gated-channels-in-soybean-cyst-nematode-chemotaxis-and-thermotaxis
#5
JOURNAL ARTICLE
Yasumasa Saeki, Akito Hosoi, Junta Fukuda, Yasuyuki Sasaki, Shunsuke Yajima, Shinsaku Ito
The soybean cyst nematode (SCN) is one of the most damaging pests affecting soybean production. SCN displays important host recognition behaviors, such as hatching and infection, by recognizing several compounds produced by the host. Therefore, controlling SCN behaviors such as chemotaxis and thermotaxis is an attractive pest control strategy. In this study, we found that cyclic nucleotide-gated channels (CNG channels) regulate SCN chemotaxis and thermotaxis and Hg-tax-2, a gene encoding a CNG channel, is an important regulator of SCN behavior...
October 8, 2023: Biochemical and Biophysical Research Communications
https://read.qxmd.com/read/37463923/conformational-trajectory-of-allosteric-gating-of-the-human-cone-photoreceptor-cyclic-nucleotide-gated-channel
#6
JOURNAL ARTICLE
Zhengshan Hu, Xiangdong Zheng, Jian Yang
Cyclic nucleotide-gated (CNG) channels transduce chemical signals into electrical signals in sensory receptors and neurons. They are activated by cGMP or cAMP, which bind to the cyclic nucleotide-binding domain (CNBD) to open a gate located 50-60 Å away in the central cavity. Structures of closed and open vertebrate CNG channels have been solved, but the conformational landscape of this allosteric gating remains to be elucidated and enriched. Here, we report structures of the cGMP-activated human cone photoreceptor CNGA3/CNGB3 channel in closed, intermediate, pre-open and open states in detergent or lipid nanodisc, all with fully bound cGMP...
July 18, 2023: Nature Communications
https://read.qxmd.com/read/37446378/cgmp-signaling-in-photoreceptor-degeneration
#7
REVIEW
Shujuan Li, Hongwei Ma, Fan Yang, Xiqin Ding
Photoreceptors in the retina are highly specialized neurons with photosensitive molecules in the outer segment that transform light into chemical and electrical signals, and these signals are ultimately relayed to the visual cortex in the brain to form vision. Photoreceptors are composed of rods and cones. Rods are responsible for dim light vision, whereas cones are responsible for bright light, color vision, and visual acuity. Photoreceptors undergo progressive degeneration over time in many hereditary and age-related retinal diseases...
July 7, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37440056/inhibition-of-ryanodine-receptor-1-reduces-endoplasmic-reticulum-er-stress-and-promotes-er-protein-degradation-in-cyclic-nucleotide-gated-channel-deficiency
#8
JOURNAL ARTICLE
Fan Yang, Hongwei Ma, Rekha Garg, Alfred Lewin, Xi-Qin Ding
The cone photoreceptor cyclic nucleotide-gated (CNG) channel plays a pivotal role in cone phototransduction. Mutations in genes encoding the channel subunits CNGA3 and CNGB3 account for about 80% of all cases of achromatopsia and are associated with progressive cone dystrophies. CNG channel deficiency leads to cellular/endoplasmic reticulum (ER) calcium dysregulation and ER stress-associated cone apoptosis. This work investigated the role of the ER calcium channel ryanodine receptor 1 (Ryr1) in ER stress and cone degeneration in CNG channel deficiency...
2023: Advances in Experimental Medicine and Biology
https://read.qxmd.com/read/37440044/photoreceptor-ion-channels-in-signaling-and-disease
#9
JOURNAL ARTICLE
Shivangi M Inamdar, Colten K Lankford, Sheila A Baker
Photoreceptors (PRs) in the neural retina convert photon capture into an electrical signal that is communicated across a chemical synapse to second-order neurons in the retina and on through the rest of the visual pathway. This information is decoded in the visual cortex to create images. The activity of PRs depends on the concerted action of several voltage-gated ion channels that will be discussed in this chapter.
2023: Advances in Experimental Medicine and Biology
https://read.qxmd.com/read/37115760/homeostasis-at-different-backgrounds-the-roles-of-overlayed-feedback-structures-in-vertebrate-photoadaptation
#10
JOURNAL ARTICLE
Jonas V Grini, Melissa Nygård, Peter Ruoff
We have studied the resetting behavior of eight basic integral controller motifs with respect to different but constant backgrounds. We found that the controllers split symmetrically into two classes: one class, based on derepression of the compensatory flux, leads to more rapid resetting kinetics as backgrounds increase. The other class, which directly activates the compensatory flux, shows a slowing down in the resetting at increased backgrounds. We found a striking analogy between the resetting kinetics of vertebrate photoreceptors and controllers based on derepression, i...
2023: PloS One
https://read.qxmd.com/read/37072125/native-function-of-the-bacterial-ion-channel-sthk-in-a-sparsely-tethered-lipid-bilayer-membrane-architecture
#11
JOURNAL ARTICLE
Jakob Andersson, David Kleinheinz, Ulrich Ramach, Nikolaus Kiesenhofer, Alex Ashenden, Markus Valtiner, Stephen Holt, Ingo Koeper, Philipp A M Schmidpeter, Wolfgang Knoll
The plasma membrane protects the interiors of cells from their surroundings and also plays a critical role in communication, sensing, and nutrient import. As a result, the cell membrane and its constituents are among the most important drug targets. Studying the cell membrane and the processes it facilitates is therefore crucial, but it is a highly complex environment that is difficult to access experimentally. Various model membrane systems have been developed to provide an environment in which membrane proteins can be studied in isolation...
April 18, 2023: Journal of Physical Chemistry. B
https://read.qxmd.com/read/37056049/development-of-a-translatable-gene-augmentation-therapy-for-cngb1-retinitis-pigmentosa
#12
JOURNAL ARTICLE
Laurence M Occelli, Lena Zobel, Jonathan Stoddard, Johanna Wagner, Nathaniel Pasmanter, Janice Querubin, Lauren M Renner, Rene Reynaga, Paige A Winkler, Kelian Sun, Luis Felipe Lp Marinho, Catherine R O'Riordan, Amy Frederick, Andreas Lauer, Stephen H Tsang, William W Hauswirth, Trevor J McGill, Martha Neuringer, Stylianos Michalakis, Simon M Petersen-Jones
In this study we investigated a gene augmentation therapy candidate for the treatment of retinitis pigmentosa (RP) due to cyclic nucleotide-gated channel beta 1 (CNGB1) mutations. We used an adeno-associated virus serotype 5-with transgene under control of a novel short human rhodopsin promoter. The promoter/capsid combination drove efficient expression of a reporter gene (AAV5-RHO-eGFP) exclusively in rod photoreceptors in primate, dog and mouse following subretinal delivery. The therapeutic vector (AAV5-RHO-CNGB1) delivered to the subretinal space of CNGB1 mutant dogs restored rod-mediated retinal function (electroretinographic responses and vision) for at least 12 months post treatment...
April 13, 2023: Molecular Therapy
https://read.qxmd.com/read/37054604/cng-channel-related-retinitis-pigmentosa
#13
JOURNAL ARTICLE
Maximilian J Gerhardt, Simon M Petersen-Jones, Stylianos Michalakis
The genes CNGA1 and CNGB1 encode the alpha and beta subunits of the rod CNG channel, a ligand-gated cation channel whose activity is controlled by cyclic guanosine monophosphate (cGMP). Autosomal inherited mutations in either of the genes lead to a progressive rod-cone retinopathy known as retinitis pigmentosa (RP). The rod CNG channel is expressed in the plasma membrane of the outer segment and functions as a molecular switch that converts light-mediated changes in cGMP into a voltage and Ca2+ signal. Here, we will first review the molecular properties and physiological role of the rod CNG channel and then discuss the characteristics of CNG-related RP...
April 11, 2023: Vision Research
https://read.qxmd.com/read/37011209/structural-basis-of-calmodulin-modulation-of-the-rod-cyclic-nucleotide-gated-channel
#14
JOURNAL ARTICLE
Diane C A Barret, Dina Schuster, Matthew J Rodrigues, Alexander Leitner, Paola Picotti, Gebhard F X Schertler, U Benjamin Kaupp, Volodymyr M Korkhov, Jacopo Marino
Calmodulin (CaM) regulates many ion channels to control calcium entry into cells, and mutations that alter this interaction are linked to fatal diseases. The structural basis of CaM regulation remains largely unexplored. In retinal photoreceptors, CaM binds to the CNGB subunit of cyclic nucleotide-gated (CNG) channels and, thereby, adjusts the channel's Cyclic guanosine monophosphate (cGMP) sensitivity in response to changes in ambient light conditions. Here, we provide the structural characterization for CaM regulation of a CNG channel by using a combination of single-particle cryo-electron microscopy and structural proteomics...
April 11, 2023: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/36834527/the-mature-coc-promotes-the-ampullary-nppc-required-for-sperm-release-from-porcine-oviduct-cells
#15
JOURNAL ARTICLE
Zhanying Wu, Biao Li, Kaiwei Yu, Nana Zheng, Feifei Yuan, Jingjing Miao, Meijia Zhang, Zhijuan Wang
Porcine spermatozoa are stored in the oviductal isthmus after natural mating, and the number of spermatozoa is increased in the oviductal ampulla when the mature cumulus-oocyte complexes (COCs) are transferred into the ampulla. However, the mechanism is unclear. Herein, natriuretic peptide type C (NPPC) was mainly expressed in porcine ampullary epithelial cells, whereas its cognate receptor natriuretic peptide receptor 2 (NPR2) was located on the neck and the midpiece of porcine spermatozoa. NPPC increased sperm motility and intracellular Ca2+ levels, and induced sperm release from oviduct isthmic cell aggregates...
February 4, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/36830806/biology-pathobiology-and-gene-therapy-of-cng-channel-related-retinopathies
#16
REVIEW
Maximilian J Gerhardt, Siegfried G Priglinger, Martin Biel, Stylianos Michalakis
The visual process begins with the absorption of photons by photopigments of cone and rod photoreceptors in the retina. In this process, the signal is first amplified by a cyclic guanosine monophosphate (cGMP)-based signaling cascade and then converted into an electrical signal by cyclic nucleotide-gated (CNG) channels. CNG channels are purely ligand-gated channels whose activity can be controlled by cGMP, which induces a depolarizing Na+ /Ca2+ current upon binding to the channel. Structurally, CNG channels belong to the superfamily of pore-loop cation channels and share structural similarities with hyperpolarization-activated cyclic nucleotide (HCN) and voltage-gated potassium (KCN) channels...
January 19, 2023: Biomedicines
https://read.qxmd.com/read/36787110/segregation-of-ca2-signaling-in-olfactory-signal-transduction
#17
JOURNAL ARTICLE
Hiroko Takeuchi, Takashi Kurahashi
Olfactory signal transduction is conducted through a cAMP-mediated second messenger cascade. The cytoplasmic Ca2+ concentration increases through the opening of CNG channels, a phenomenon that underlies two major functions, namely, signal boosting and olfactory adaptation. Signal boosting is achieved by an additional opening of the Ca2+-activated Cl- channel whereas adaptation is regulated by Ca2+ feedback to the CNG channel. Thus, the influx of Ca2+ and the resultant increase in cytoplasmic Ca2+ levels play seemingly opposing effects: increasing the current while reducing the current through adaptation...
April 3, 2023: Journal of General Physiology
https://read.qxmd.com/read/36784703/potentiation-of-cng-channel-gating-by-matrix-metalloproteinases-is-governed-by-the-turret-region-and-intracellular-disulfide-bonds
#18
JOURNAL ARTICLE
Sophie I Biencourt, Peter Meighan, Kemal Donlic, Michael D Varnum
No abstract text is available yet for this article.
February 10, 2023: Biophysical Journal
https://read.qxmd.com/read/36784300/pip2-sterically-inhibits-pore-opening-of-a-cng-channel
#19
JOURNAL ARTICLE
Oliver Thon, Philipp A M Schmidpeter, Crina M Nimigean
No abstract text is available yet for this article.
February 10, 2023: Biophysical Journal
https://read.qxmd.com/read/36584110/ancient-multiplicity-in-cyclic-nucleotide-gated-cng-cation-channel-repertoire-was-reduced-in-the-ancestor-of-olfactores-before-re-expansion-by-whole-genome-duplications-in-vertebrates
#20
JOURNAL ARTICLE
David Lagman, Helen J Haines, Xesús M Abalo, Dan Larhammar
Cyclic nucleotide-gated (CNG) cation channels are important heterotetrameric proteins in the retina, with different subunit composition in cone and rod photoreceptor cells: three CNGA3 and one CNGB3 in cones and three CNGA1 and one CNGB1 in rods. CNGA and CNGB subunits form separate subfamilies. We have analyzed the evolution of the CNG gene family in metazoans, with special focus on vertebrates by using sequence-based phylogeny and conservation of chromosomal synteny to deduce paralogons resulting from the early vertebrate whole genome duplications (WGDs)...
2022: PloS One
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