Nicole Acosta, Maria A Bautista, Barbara J Waddell, Kristine Du, Janine McCalder, Puja Pradhan, Navid Sedaghat, Chloe Papparis, Alexander Buchner Beaudet, Jianwei Chen, Jennifer Van Doorn, Kevin Xiang, Leslie Chan, Laura Vivas, Kashtin Low, Xuewen Lu, Jangwoo Lee, Paul Westlund, Thierry Chekouo, Xiaotian Dai, Jason Cabaj, Srijak Bhatnagar, Norma Ruecker, Gopal Achari, Rhonda G Clark, Craig Pearce, Joe J Harrison, Jon Meddings, Jenine Leal, Jennifer Ellison, Bayan Missaghi, Jamil N Kanji, Oscar Larios, Elissa Rennert-May, Joseph Kim, Steve E Hrudey, Bonita E Lee, Xiaoli Pang, Kevin Frankowski, John Conly, Casey R J Hubert, Michael D Parkins
Wastewater-based SARS-CoV-2 surveillance enables unbiased and comprehensive monitoring of defined sewersheds. We performed real-time monitoring of hospital wastewater that differentiated Delta and Omicron variants within total SARS-CoV-2-RNA, enabling correlation to COVID-19 cases from three tertiary-care facilities with >2100 inpatient beds in Calgary, Canada. RNA was extracted from hospital wastewater between August/2021 and January/2022, and SARS-CoV-2 quantified using RT-qPCR. Assays targeting R203M and R203K/G204R established the proportional abundance of Delta and Omicron, respectively...
December 29, 2022: Journal of Medical Virology