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https://www.readbyqxmd.com/read/28340410/development-of-fusogenic-glass-surfaces-that-impart-spatiotemporal-control-over-macrophage-fusion-direct-visualization-of-multinucleated-giant-cell-formation
#1
James J Faust, Wayne Christenson, Kyle Doudrick, Robert Ros, Tatiana P Ugarova
Implantation of synthetic material, including vascular grafts, pacemakers, etc. results in the foreign body reaction and the formation of multinucleated giant cells (MGCs) at the exterior surface of the implant. Despite the long-standing premise that fusion of mononucleated macrophages results in the formation of MGCs, to date, no published study has shown fusion in context with living specimens. This is due to the fact that optical-quality glass, which is required for the majority of live imaging techniques, does not promote macrophage fusion...
March 2, 2017: Biomaterials
https://www.readbyqxmd.com/read/28340375/repetitive-tms-in-right-sensorimotor-areas-affects-the-selection-and-completion-of-contralateral-movements
#2
Maria Gutierrez-Herrera, Styrmir Saevarsson, Thomas Huber, Joachim Hermsdörfer, Waltraud Stadler
Although the existence of directional motor deficits (DMD) associated with movement planning and/or execution seems to be widely recognized, neglect and single cell studies examining their neuroanatomical foundation have produced contradictory and inconclusive findings. The present study assessed the occurrence of DMD following the application of repetitive transcranial magnetic stimulation (rTMS) over two regions, as commonly reported in the neglect literature, namely the right middle frontal gyrus (rMFG) and the right angular gyrus (rAG)...
February 24, 2017: Cortex; a Journal Devoted to the Study of the Nervous System and Behavior
https://www.readbyqxmd.com/read/28340371/walking-adaptability-assessments-with-the-interactive-walkway-between-systems-agreement-and-sensitivity-to-task-and-subject-variations
#3
Daphne J Geerse, Bert H Coolen, Melvyn Roerdink
The ability to adapt walking to environmental circumstances is an important aspect of walking, yet difficult to assess. The Interactive Walkway was developed to assess walking adaptability by augmenting a multi-Kinect-v2 10-m walkway with gait-dependent visual context (stepping targets, obstacles) using real-time processed markerless full-body kinematics. In this study we determined Interactive Walkway's usability for walking-adaptability assessments in terms of between-systems agreement and sensitivity to task and subject variations...
March 2, 2017: Gait & Posture
https://www.readbyqxmd.com/read/28339715/determination-of-pre-cecal-phosphorus-digestibility-of-inorganic-phosphates-and-bone-meal-products-in-broilers
#4
J van Harn, J W Spek, C A van Vuure, M M van Krimpen
A broiler study was performed to determine the pre-cecal phosphorus (P) digestibility of 5 P sources, 3 from animal (Delfos, Calfos, and porcine bone meal) and 2 of inorganic (monocalcium phosphate [MCP] and dicalcium phosphate [DCP]) origin. Delfos is processed from bones resulting in a dicalcium phosphate product, and Calfos is processed from bones in which part of the gelatin is removed but in which the hydroxy-apatite matrix is preserved. During the first 14 d, birds were housed in floor pens bedded with wood shavings and received a commercial starter diet...
February 22, 2017: Poultry Science
https://www.readbyqxmd.com/read/28339681/on-tear-film-breakup-tbu-dynamics-and-imaging
#5
Richard J Braun, Tobin A Driscoll, Carolyn G Begley, P Ewen King-Smith, Javed I Siddique
We report the results of some recent experiments to visualize tear film dynamics. We then study a mathematical model for tear film thinning and tear film breakup (TBU), a term from the ocular surface literature. The thinning is driven by an imposed tear film thinning rate which is input from in vivo measurements. Solutes representing osmolarity and fluorescein are included in the model. Osmolarity causes osmosis from the model ocular surface, and the fluorescein is used to compute the intensity corresponding closely to in vivo observations...
February 20, 2017: Mathematical Medicine and Biology: a Journal of the IMA
https://www.readbyqxmd.com/read/28335558/modeling-the-development-of-audiovisual-cue-integration-in-speech-perception
#6
Laura M Getz, Elke R Nordeen, Sarah C Vrabic, Joseph C Toscano
Adult speech perception is generally enhanced when information is provided from multiple modalities. In contrast, infants do not appear to benefit from combining auditory and visual speech information early in development. This is true despite the fact that both modalities are important to speech comprehension even at early stages of language acquisition. How then do listeners learn how to process auditory and visual information as part of a unified signal? In the auditory domain, statistical learning processes provide an excellent mechanism for acquiring phonological categories...
March 21, 2017: Brain Sciences
https://www.readbyqxmd.com/read/28334977/sclip-an-integrated-platform-to-study-rna-protein-interactomes-in-biomedical-research-identification-of-cstf2tau-in-alternative-processing-of-small-nuclear-rnas
#7
Yulia Kargapolova, Michal Levin, Karl Lackner, Sven Danckwardt
RNA-binding proteins (RBPs) are central for gene expression by controlling the RNA fate from birth to decay. Various disorders arising from perturbations of RNA-protein interactions document their critical function. However, deciphering their function is complex, limiting the general functional elucidation of this growing class of proteins and their contribution to (patho)physiology. Here, we present sCLIP, a simplified and robust platform for genome-wide interrogation of RNA-protein interactomes based on crosslinking-immunoprecipitation and high-throughput sequencing...
February 28, 2017: Nucleic Acids Research
https://www.readbyqxmd.com/read/28334302/olfaction-warps-visual-time-perception
#8
Bin Zhou, Guo Feng, Wei Chen, Wen Zhou
Our perception of the world builds upon dynamic inputs from multiple senses with different temporal resolutions, and is threaded with the passing of subjective time. How time is extracted from multisensory inputs is scantly known. Utilizing psychophysical testing and electroencephalography, we show in healthy human adults that odors modulate object visibility around critical flicker-fusion frequency (CFF)-the limit at which chromatic flickers become perceived as a stable color-and effectively alter CFF in a congruency-based manner, despite that they afford no clear environmental temporal information...
March 17, 2017: Cerebral Cortex
https://www.readbyqxmd.com/read/28334291/smartr-an-open-source-platform-for-interactive-visual-analytics-for-translational-research-data
#9
Sascha Herzinger, Wei Gu, Venkata Satagopam, Serge Eifes, Kavita Rege, Adriano Barbosa Da Silva, Reinhard Schneider
In translational research, efficient knowledge exchange between the different fields of expertise is crucial. An open platform that is capable of storing a multitude of data types such as clinical, pre-clinical, or OMICS data combined with strong visual analytical capabilities will significantly accelerate the scientific progress by making data more accessible and hypothesis generation easier. The open data warehouse tranSMART is capable of storing a variety of data types and has a growing user community including both academic institutions and pharmaceutical companies...
March 9, 2017: Bioinformatics
https://www.readbyqxmd.com/read/28334225/pom-thalamocortical-input-drives-layer-specific-microcircuits-in-somatosensory-cortex
#10
Nicholas J Audette, Joanna Urban-Ciecko, Megumi Matsushita, Alison L Barth
Higher-order thalamic nuclei, such as the posterior medial nucleus (POm) in the somatosensory system or the pulvinar in the visual system, densely innervate the cortex and can influence perception and plasticity. To systematically evaluate how higher-order thalamic nuclei can drive cortical circuits, we investigated cell-type selective responses to POm stimulation in mouse primary somatosensory (barrel) cortex, using genetically targeted whole-cell recordings in acute brain slices. We find that ChR2-evoked thalamic input selectively targets specific cell types in the neocortex, revealing layer-specific modules for the summation and processing of POm input...
March 10, 2017: Cerebral Cortex
https://www.readbyqxmd.com/read/28334188/climate-extremes-vegetation-change-and-decoupling-of-interactive-fire-grazing-processes-exacerbate-fly-parasitism-of-cattle
#11
John D Scasta, Justin L Talley, David M Engle, Diane M Debinski
We assessed local horn fly (Haematobia irritans L.) and face fly (Musca autumnalis De Geer) communities on cattle in 2012 and 2013 relative to vegetation and climate data to understand how parasitism of cattle is influenced by change in climate and vegetation structure. We compared heterogeneity management using spatially and temporally discrete fires (i.e., patch-burning one-third of a pasture annually) to homogeneity management (i.e., burning entire pasture in 2012 then no burning in 2013), with cattle grazing all years in both treatments...
February 17, 2017: Environmental Entomology
https://www.readbyqxmd.com/read/28334181/uncovering-the-spatial-profile-of-contour-integration-from-fixational-saccades-evidence-for-widespread-processing-in-v1
#12
Ariel Gilad, Roy Oz, Hamutal Slovin
During contour integration, neuronal populations in the primary visual cortex (V1) enhance their responses to the contour while suppressing their responses to the noisy background. However, the spatial extent and profile of these responses are not fully understood. To investigate this question, 2 monkeys were trained on a contour detection task while we measured population responses in V1 using voltage-sensitive dyes. During stimulus presentation the animals made few fixational saccades, and we used their changing gaze position to image and analyze neuronal responses from large part of the stimulus, encoding multiple contour/background elements...
October 5, 2016: Cerebral Cortex
https://www.readbyqxmd.com/read/28334175/attenuated-fast-steady-state-visual-evoked-potentials-during-human-sleep
#13
Omer Sharon, Yuval Nir
During sleep, external sensory events rarely elicit a behavioral response or affect perception. However, how sensory processing differs between wakefulness and sleep remains unclear. A major difficulty in this field stems from using brief auditory stimuli that often trigger nonspecific high-amplitude "K-complex" responses and complicate interpretation. To overcome this challenge, here we delivered periodic visual flicker stimulation across sleep and wakefulness while recording high-density electroencephalography (EEG) in humans...
February 25, 2017: Cerebral Cortex
https://www.readbyqxmd.com/read/28334126/heartfelt-self-cardio-visual-integration-affects-self-face-recognition-and-interoceptive-cortical-processing
#14
Alejandra Sel, Ruben T Azevedo, Manos Tsakiris
The sense of body-ownership relies on the representation of both interoceptive and exteroceptive signals coming from one's body. However, it remains unknown how the integration of bodily signals coming from "outside" and "inside" the body is instantiated in the brain. Here, we used a modified version of the Enfacement Illusion to investigate whether the integration of visual and cardiac information can alter self-face recognition (Experiment 1) and neural responses to heartbeats (Experiment 2). We projected a pulsing shade, that was synchronous or asynchronous with the participant's heartbeat, onto a picture depicting the participant's face morphed with the face of an unfamiliar other...
October 5, 2016: Cerebral Cortex
https://www.readbyqxmd.com/read/28334120/svpv-a-structural-variant-prediction-viewer-for-paired-end-sequencing-datasets
#15
Jacob E Munro, Sally L Dunwoodie, Eleni Giannoulatou
Motivation: A wide range of algorithms exist for the prediction of structural variants (SVs) from paired-end whole genome sequencing (WGS) alignments. It is essential for the purpose of quality control to be able to visualize, compare and contrast the data underlying the predictions across multiple different algorithms. Results: We provide the structural variant prediction viewer, a tool which presents a visual summary of the most relevant features for SV prediction from WGS data...
February 27, 2017: Bioinformatics
https://www.readbyqxmd.com/read/28334075/intrinsic-brain-hub-connectivity-underlies-individual-differences-in-spatial-working-memory
#16
Jin Liu, Mingrui Xia, Zhengjia Dai, Xiaoying Wang, Xuhong Liao, Yanchao Bi, Yong He
Spatial working memory (SWM) is an important component of working memory and plays an essential role in driving high-level cognitive abilities. Recent studies have demonstrated that individual SWM is associated with global brain communication. However, whether specific network nodal connectivity, such as brain hub connectivity, is involved in individual SWM performances remains largely unknown. Here, we collected resting-state fMRI (R-fMRI) data from a large group of 130 young healthy participants and evaluated their SWM performances...
October 13, 2016: Cerebral Cortex
https://www.readbyqxmd.com/read/28334006/assessing-various-infrared-ir-microscopic-imaging-techniques-for-post-mortem-interval-evaluation-of-human-skeletal-remains
#17
Claudia Woess, Seraphin Hubert Unterberger, Clemens Roider, Monika Ritsch-Marte, Nadin Pemberger, Jan Cemper-Kiesslich, Petra Hatzer-Grubwieser, Walther Parson, Johannes Dominikus Pallua
Due to the influence of many environmental processes, a precise determination of the post-mortem interval (PMI) of skeletal remains is known to be very complicated. Although methods for the investigation of the PMI exist, there still remains much room for improvement. In this study the applicability of infrared (IR) microscopic imaging techniques such as reflection-, ATR- and Raman- microscopic imaging for the estimation of the PMI of human skeletal remains was tested. PMI specific features were identified and visualized by overlaying IR imaging data with morphological tissue structures obtained using light microscopy to differentiate between forensic and archaeological bone samples...
2017: PloS One
https://www.readbyqxmd.com/read/28333934/visualizing-the-structure-of-rna-seq-expression-data-using-grade-of-membership-models
#18
Kushal K Dey, Chiaowen Joyce Hsiao, Matthew Stephens
Grade of membership models, also known as "admixture models", "topic models" or "Latent Dirichlet Allocation", are a generalization of cluster models that allow each sample to have membership in multiple clusters. These models are widely used in population genetics to model admixed individuals who have ancestry from multiple "populations", and in natural language processing to model documents having words from multiple "topics". Here we illustrate the potential for these models to cluster samples of RNA-seq gene expression data, measured on either bulk samples or single cells...
March 2017: PLoS Genetics
https://www.readbyqxmd.com/read/28333632/enhanced-just-noticeable-difference-model-for-images-with-pattern-complexity
#19
Jinjian Wu, Leida Li, Weisheng Dong, Guangming Shi, Weisi Lin, C-C Jay Kuo
The just noticeable difference (JND) in an image, which reveals the visibility limitation of the human visual system (HVS), is widely used for visual redundancy estimation in signal processing. To determine the JND threshold with the current schemes, the spatial masking effect is estimated as the contrast masking, and this cannot accurately account for the complicated interaction among visual contents. Research on cognitive science indicates that the HVS is highly adapted to extract the repeated patterns for visual content representation...
March 22, 2017: IEEE Transactions on Image Processing: a Publication of the IEEE Signal Processing Society
https://www.readbyqxmd.com/read/28333621/reconstructing-evolving-tree-structures-in-time-lapse-sequences-by-enforcing-time-consistency
#20
Przemyslaw Glowacki, Miguel Amavel Pinheiro, Agata Mosinska, Engin Turetken, Daniel Lebrecht, Anthony Holtmaat, Raphael Sznitman, Jan Kybic, Pascal Fua
We propose a novel approach to reconstructing curvilinear tree structures evolving over time, such as road networks in 2D aerial images or neural structures in 3D microscopy stacks acquired in vivo. To enforce temporal consistency, we simultaneously process all images in a sequence, as opposed to reconstructing structures of interest in each image independently. We formulate the problem as a Quadratic Mixed Integer Program and demonstrate the additional robustness that comes from using all available visual clues at once, instead of working frame by frame...
March 10, 2017: IEEE Transactions on Pattern Analysis and Machine Intelligence
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