keyword
https://read.qxmd.com/read/37947759/structure-based-optimization-of-carbendazim-derived-tubulin-polymerization-inhibitors-through-alchemical-free-energy-calculations
#21
JOURNAL ARTICLE
Lucia Cano-González, Johan D Espinosa-Mendoza, Félix Matadamas-Martínez, Ariana Romero-Velásquez, Miguel Flores-Ramos, Luis Fernando Colorado-Pablo, Marco Antonio Cerbón-Cervantes, Rafael Castillo, Ignacio González-Sánchez, Lilián Yépez-Mulia, Alicia Hernández-Campos, Rodrigo Aguayo-Ortiz
Carbendazim derivatives, commonly used as antiparasitic drugs, have shown potential as anticancer agents due to their ability to induce cell cycle arrest and apoptosis in human cancer cells by inhibiting tubulin polymerization. Crystallographic structures of α/β-tubulin multimers complexed with nocodazole and mebendazole, two carbendazim derivatives with potent anticancer activity, highlighted the possibility of designing compounds that occupy both benzimidazole- and colchicine-binding sites. In addition, previous studies have demonstrated that the incorporation of a phenoxy group at position 5/6 of carbendazim increases the antiproliferative activity in cancer cell lines...
November 10, 2023: Journal of Chemical Information and Modeling
https://read.qxmd.com/read/37941133/high-fidelity-large-diversity-monoclonal-mammalian-cell-libraries-by-cell-cycle-arrested-recombinase-mediated-cassette-exchange
#22
JOURNAL ARTICLE
Chuan Chen, Zening Wang, Minhyo Kang, Ki Baek Lee, Xin Ge
Mammalian cells carrying defined genetic variations have shown great potentials in both fundamental research and therapeutic development. However, their full use was limited by lack of a robust method to construct large monoclonal high-quality combinatorial libraries. This study developed cell cycle arrested recombinase-mediated cassette exchange (aRMCE), able to provide monoclonality, precise genomic integration and uniform transgene expression. Via optimized nocodazole-mediated mitotic arrest, 20% target gene replacement efficiency was achieved without antibiotic selection, and the improved aRMCE efficiency was applicable to a variety of tested cell clones, transgene targets and transfection methods...
November 6, 2023: Nucleic Acids Research
https://read.qxmd.com/read/37903625/biogenesis-inheritance-and-3d-ultrastructure-of-the-microsporidian-mitosome
#23
JOURNAL ARTICLE
Christian Hacker, Kacper Sendra, Priyanka Keisham, Teodora Filipescu, James Lucocq, Fatemeh Salimi, Sophie Ferguson, David Bhella, Stuart A MacNeill, Martin Embley, John Lucocq
During the reductive evolution of obligate intracellular parasites called microsporidia, a tiny remnant mitochondrion (mitosome) lost its typical cristae, organellar genome, and most canonical functions. Here, we combine electron tomography, stereology, immunofluorescence microscopy, and bioinformatics to characterise mechanisms of growth, division, and inheritance of this minimal mitochondrion in two microsporidia species (grown within a mammalian RK13 culture-cell host). Mitosomes of Encephalitozoon cuniculi (2-12/cell) and Trachipleistophora hominis (14-18/nucleus) displayed incremental/non-phasic growth and division and were closely associated with an organelle identified as equivalent to the fungal microtubule-organising centre (microsporidian spindle pole body; mSPB)...
January 2024: Life Science Alliance
https://read.qxmd.com/read/37858340/abl2-repairs-microtubules-and-phase-separates-with-tubulin-to-promote-microtubule-nucleation
#24
JOURNAL ARTICLE
Daisy Duan, Wanqing Lyu, Pengxin Chai, Shaojie Ma, Kuanlin Wu, Chunxiang Wu, Yong Xiong, Nenad Sestan, Kai Zhang, Anthony J Koleske
Abl family kinases are evolutionarily conserved regulators of cell migration and morphogenesis. Genetic experiments in Drosophila suggest that Abl family kinases interact functionally with microtubules to regulate axon guidance and neuronal morphogenesis. Vertebrate Abl2 binds to microtubules and promotes their plus-end elongation, both in vitro and in cells, but the molecular mechanisms by which Abl2 regulates microtubule (MT) dynamics are unclear. We report here that Abl2 regulates MT assembly via condensation and direct interactions with both the MT lattice and tubulin dimers...
October 18, 2023: Current Biology: CB
https://read.qxmd.com/read/37782660/microtubules-oppose-cortical-actomyosin-driven-membrane-ingression-during-c-elegans-meiosis-i-polar-body-extrusion
#25
JOURNAL ARTICLE
Alyssa R Quiogue, Eisuke Sumiyoshi, Adam Fries, Chien-Hui Chuang, Bruce Bowerman
During C. elegans oocyte meiosis I cytokinesis and polar body extrusion, cortical actomyosin is locally remodeled to assemble a contractile ring that forms within and remains part of a much larger and actively contractile cortical actomyosin network. This network both mediates contractile ring dynamics and generates shallow ingressions throughout the oocyte cortex during polar body extrusion. Based on our analysis of requirements for CLS-2, a member of the CLASP family of proteins that stabilize microtubules, we recently proposed that a balance of actomyosin-mediated tension and microtubule-mediated stiffness limits membrane ingression throughout the oocyte during meiosis I polar body extrusion...
October 2023: PLoS Genetics
https://read.qxmd.com/read/37763816/microfluidic-microcirculation-mimetic-for-exploring-biophysical-mechanisms-of-chemotherapy-induced-metastasis
#26
JOURNAL ARTICLE
Ashley Abraham, Sukhman Virdi, Nick Herrero, Israel Bryant, Chisom Nwakama, Megha Jacob, Gargee Khaparde, Destiny Jordan, Mackenzie McCuddin, Spencer McKinley, Adam Taylor, Conner Peeples, Andrew Ekpenyong
There is rapidly emerging evidence from pre-clinical studies, patient samples and patient subpopulations that certain chemotherapeutics inadvertently produce prometastatic effects. Prior to this, we showed that doxorubicin and daunorubicin stiffen cells before causing cell death, predisposing the cells to clogging and extravasation, the latter being a step in metastasis. Here, we investigate which other anti-cancer drugs might have similar prometastatic effects by altering the biophysical properties of cells...
August 22, 2023: Micromachines
https://read.qxmd.com/read/37759476/nap-davunetide-the-neuroprotective-adnp-drug-candidate-penetrates-cell-nuclei-explaining-pleiotropic-mechanisms
#27
JOURNAL ARTICLE
Maram Ganaiem, Nina D Gildor, Shula Shazman, Gidon Karmon, Yanina Ivashko-Pachima, Illana Gozes
(1) Background: Recently, we showed aberrant nuclear/cytoplasmic boundaries/activity-dependent neuroprotective protein (ADNP) distribution in ADNP-mutated cells. This malformation was corrected upon neuronal differentiation by the ADNP-derived fragment drug candidate NAP (davunetide). Here, we investigated the mechanism of NAP nuclear protection. (2) Methods: CRISPR/Cas9 DNA-editing established N1E-115 neuroblastoma cell lines that express two different green fluorescent proteins (GFPs)-labeled mutated ADNP variants (p...
September 11, 2023: Cells
https://read.qxmd.com/read/37754248/2-methoxyestradiol-as-an-antiproliferative-agent-for-long-term-estrogen-deprived-breast-cancer-cells
#28
JOURNAL ARTICLE
Masayo Hirao-Suzuki, Koki Kanameda, Masufumi Takiguchi, Narumi Sugihara, Shuso Takeda
To identify effective treatment modalities for breast cancer with acquired resistance, we first compared the responsiveness of estrogen receptor-positive breast cancer MCF-7 cells and long-term estrogen-deprived (LTED) cells (a cell model of endocrine therapy-resistant breast cancer) derived from MCF-7 cells to G-1 and 2-methoxyestradiol (2-MeO-E2), which are microtubule-destabilizing agents and agonists of the G protein-coupled estrogen receptor 1 (GPER1). The expression of GPER1 in LTED cells was low (~0...
September 9, 2023: Current Issues in Molecular Biology
https://read.qxmd.com/read/37732478/vimentin-intermediate-filaments-provide-structural-stability-to-the-mammalian-golgi-apparatus
#29
JOURNAL ARTICLE
Teresa Vitali, Rosa Sanchez-Alvarez, Tomasz M Witkos, Ioannis Bantounas, Marie F A Cutiongco, Michal Dudek, Guanhua Yan, Alexander A Mironov, Joe Swift, Martin Lowe
The Golgi apparatus comprises a connected ribbon of stacked cisternal membranes localized to the perinuclear region of most vertebrate cells. The position and morphology of this organelle depends upon interactions with microtubules and the actin cytoskeleton. In contrast, we know relatively little about the relationship of the Golgi apparatus with intermediate filaments. In this study we show that the Golgi is in close physical proximity to vimentin intermediate filaments (IFs) in cultured mouse and human cells...
September 21, 2023: Journal of Cell Science
https://read.qxmd.com/read/37728741/ctcf-is-essential-for-proper-mitotic-spindle-structure-and-anaphase-segregation
#30
JOURNAL ARTICLE
Katherine Chiu, Yasmin Berrada, Nebiyat Eskndir, Dasol Song, Claire Fong, Sarah Naughton, Tina Chen, Savanna Moy, Sarah Gyurmey, Liam James, Chimere Ezeiruaku, Caroline Capistran, Daniel Lowey, Vedang Diwanji, Samantha Peterson, Harshini Parakh, Ayanna R Burgess, Cassandra Probert, Annie Zhu, Bryn Anderson, Nehora Levi, Gabi Gerlitz, Mary C Packard, Katherine A Dorfman, Michael Seifu Bahiru, Andrew D Stephens
Mitosis is an essential process in which the duplicated genome is segregated equally into two daughter cells. CTCF has been reported to be present in mitosis and has a role in localizing CENP-E, but its importance for mitotic fidelity remains to be determined. To evaluate the importance of CTCF in mitosis, we tracked mitotic behaviors in wild-type and two different CTCF CRISPR-based genetic knockdowns. We find that knockdown of CTCF results in prolonged mitoses and failed anaphase segregation via time-lapse imaging of SiR-DNA...
September 20, 2023: Chromosoma
https://read.qxmd.com/read/37666639/methods-to-visualise-zinc-transporter-proteins-of-the-slc39a-family-in-cells
#31
JOURNAL ARTICLE
Georgia Farr, Samuel Jones, Kathryn M Taylor
Zinc is essential to many important biological processes and the SLC39A family of zinc transporters which help to control zinc levels in cells, are increasingly being implicated in disease states. In order to determine their exact roles in these processes, reliable methods for their successful production are now required. Unfortunately, extensive post-translational modification and temporally specific activation makes visualisation of ZIP family transporters difficult. As such, modifications of common molecular cell biology techniques are necessary to maximise success when studying these proteins...
2023: Methods in Enzymology
https://read.qxmd.com/read/37659202/wee1-inhibition-by-mk1775-potentiates-gemcitabine-through-accumulated-replication-stress-leading-to-apoptosis-in-biliary-tract-cancer
#32
JOURNAL ARTICLE
Chiao-Ping Chen, Chun-Nan Yeh, Yi-Ru Pan, Wen-Kuan Huang, Yu-Tien Hsiao, Chih-Hong Lo, Chiao-En Wu
Patients with advanced biliary tract cancer (BTC) have a poor prognosis, and novel treatments are needed. Gemcitabine, the standard of care for BTC, induces DNA damage; however, the ability of cancer cells to repair DNA dampens its effects. To improve the efficacy of gemcitabine, we combined it with MK1775, a Wee1 inhibitor that prevents activation of the G2/M checkpoint. BTC cell lines were treated with gemcitabine only or in combination with MK1775 to determine the therapeutic potential of BTC. Gemcitabine inhibited the growth and induced the apoptosis of four BTC cell lines to a greater extent when added with MK1775 than when added alone...
August 31, 2023: Biomedicine & Pharmacotherapy
https://read.qxmd.com/read/37603754/nlrp3-is-essential-for-neutrophil-polarization-and-chemotaxis-in-response-to-leukotriene-b4-gradient
#33
JOURNAL ARTICLE
Stijn Van Bruggen, Pierre-André Jarrot, Eline Thomas, Casey E Sheehy, Camila M S Silva, Alan Y Hsu, Pierre Cunin, Peter A Nigrovic, Edgar R Gomes, Hongbo R Luo, Clare M Waterman, Denisa D Wagner
Neutrophil recruitment to sites of infection and inflammation is an essential process in the early innate immune response. Upon activation, a subset of neutrophils rapidly assembles the multiprotein complex known as the NLRP3 inflammasome. The NLRP3 inflammasome forms at the microtubule organizing center, which promotes the formation of interleukin (IL)-1β and IL-18, essential cytokines in the immune response. We recently showed that mice deficient in NLRP3 (NLRP3-/- ) have reduced neutrophil recruitment to the peritoneum in a model of thioglycolate-induced peritonitis...
August 29, 2023: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/37530699/an-improved-multicellular-human-organoid-model-for-the-study-of-chemical-effects-on-palatal-fusion
#34
JOURNAL ARTICLE
Cynthia J Wolf, Hunter Fitzpatrick, Carrie Becker, Jessica Smith, Carmen Wood
BACKGROUND: Tissue fusion is a mechanism involved in the development of the heart, iris, genital tubercle, neural tube, and palate during embryogenesis. Failed fusion of the palatal shelves could result in cleft palate (CP), a common birth defect. Organotypic models constructed of human cells offer an opportunity to investigate developmental processes in the human. Previously, our laboratory developed an organoid model of the human palate that contains human mesenchyme and epithelial progenitor cells to study the effects of chemicals on fusion...
August 2, 2023: Birth Defects Research
https://read.qxmd.com/read/37494180/periodicity-mixed-mode-oscillations-and-multiple-timescales-in-a-phosphoinositide-rho-gtpase-network
#35
JOURNAL ARTICLE
Chee San Tong, X J Xǔ, Min Wu
While rhythmic contractile behavior is commonly observed at the cellular cortex, the primary focus has been on excitable or periodic events described by simple activator-delayed inhibitor mechanisms. We show that Rho GTPase activation in nocodazole-treated mitotic cells exhibits both simple oscillations and complex mixed-mode oscillations. Rho oscillations with a 20- to 30-s period are regulated by phosphatidylinositol (3,4,5)-trisphosphate (PIP3 ) via an activator-delayed inhibitor mechanism, while a slow reaction with period of minutes is regulated by phosphatidylinositol 4-kinase via an activator-substrate depletion mechanism...
July 25, 2023: Cell Reports
https://read.qxmd.com/read/37439014/identification-of-tubb4a-as-a-prognostic-biomarker-of-melanoma-by-transcriptomic-data-and-in-vitro-experiments
#36
JOURNAL ARTICLE
Jiaqi Zhang, Yu Zhang, Jun Liu, Judong Luo, Yifei Yun, Yan Cao
Background: Melanoma is one of the most malignant skin carcinomas with high metastatic potential. Increasing evidence has demonstrated that β-tubulin 4A (TUBB4A) plays a key role in the development and progression of several types of human cancer. However, the potential function of TUBB4A in cutaneous melanoma remains to be determined. Methods: We first performed a differential expression analysis based on skin melanoma tissues and normal tissues from Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) datasets and then a survival analysis to identify prognostic-related key genes...
2023: Technology in Cancer Research & Treatment
https://read.qxmd.com/read/37360445/histone-deacetylase-inhibition-and-autophagy-modulation-induces-a-synergistic-antiproliferative-effect-and-cell-death-in-cholangiocarcinoma-cells
#37
JOURNAL ARTICLE
Münevver Yenigül, Emel Başak Gencer Akçok
Cholangiocarcinoma, also known as biliary tract cancer, is an aggressive adenocarcinoma arising from epithelial cells lining the intra- and extrahepatic biliary system. The effects of autophagy modulators and histone deacetylase (HDAC) inhibitors in cholangiocarcinoma are not fully known. It is essential to understand the molecular mechanisms and the effects of HDAC inhibitors in the context of cholangiocarcinoma. The antiproliferative effect of different HDAC inhibitors and autophagy modulation was investigated by the MTT cell viability assay in TFK-1 and EGI-1 cholangiocarcinoma cell lines...
June 20, 2023: ACS Omega
https://read.qxmd.com/read/37351173/microtubule-stabilization-targeting-regenerative-chondrocyte-cluster-for-cartilage-regeneration
#38
JOURNAL ARTICLE
Jiawei Li, Chunmei Fan, Zhongyang Lv, Ziying Sun, Jie Han, Maochun Wang, Huiming Jiang, Kuoyang Sun, Guihua Tan, Hu Guo, Anlong Liu, Heng Sun, Xingquan Xu, Rui Wu, Wenjin Yan, Qing Jiang, Shiro Ikegawa, Xiao Chen, Dongquan Shi
Purpose: Chondrocytes (CHs) in cartilage undergo several detrimental events during the development of osteoarthritis (OA). However, the mechanism underlying CHs regeneration involved in pathogenesis is largely unknown. The aim of this study was to explore the underlying mechanism of regeneration of CHs involved in the pathological condition and the potential therapeutic strategies of cartilage repair. Methods and Materials: CHs were isolated from human cartilage in different OA stages and the high-resolution cellular architecture of human osteoarthritis was examined by applying single-cell RNA sequencing...
2023: Theranostics
https://read.qxmd.com/read/37339729/distinct-effects-of-heat-shock-temperatures-on-mitotic-progression-by-influencing-the-spindle-assembly-checkpoint
#39
JOURNAL ARTICLE
Saki Ota, Yui Tanaka, Ryuji Yasutake, Yuki Ikeda, Ryuzaburo Yuki, Yuji Nakayama, Youhei Saito
Heat shock is a physiological and environmental stress that leads to the denaturation and inactivation of cellular proteins and is used in hyperthermia cancer therapy. Previously, we revealed that mild heat shock (42 °C) delays the mitotic progression by activating the spindle assembly checkpoint (SAC). However, it is unclear whether SAC activation is maintained at higher temperatures than 42 °C. Here, we demonstrated that a high temperature of 44 °C just before mitotic entry led to a prolonged mitotic delay in the early phase, which was shortened by the SAC inhibitor, AZ3146, indicating SAC activation...
June 18, 2023: Experimental Cell Research
https://read.qxmd.com/read/37329091/models-of-vimentin-organization-under-actin-driven-transport
#40
JOURNAL ARTICLE
Youngmin Park, Cécile Leduc, Sandrine Etienne-Manneville, Stéphanie Portet
Intermediate filaments form an essential structural network, spread throughout the cytoplasm, and play a key role in cell mechanics, intracellular organization, and molecular signaling. The maintenance of the network and its adaptation to the cell's dynamic behavior relies on several mechanisms implicating cytoskeletal crosstalk which are not fully understood. Mathematical modeling allows us to compare several biologically realistic scenarios to help us interpret experimental data. In this study we observe and model the dynamics of the vimentin intermediate filaments in single glial cells seeded on circular micropatterns following microtubule disruption by nocodazole treatment...
May 2023: Physical Review. E
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