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https://www.readbyqxmd.com/read/28934260/characterization-of-the-nasal-and-oral-microbiota-of-detection-dogs
#1
Anitha Isaiah, Aline Rodrigues Hoffmann, Russ Kelley, Paul Mundell, Jörg M Steiner, Jan S Suchodolski
Little is known about physiological factors that affect the sense of olfaction in dogs. The objectives of this study were to describe the canine nasal and oral microbiota in detection dogs. We sought to determine the bacterial composition of the nasal and oral microbiota of a diverse population of detection canines. Nasal and oral swabs were collected from healthy dogs (n = 81) from four locations-Alabama, Georgia, California, and Texas. Nasal and oral swabs were also collected from a second cohort of detection canines belonging to three different detection job categories: explosive detection dogs (SP-E; n = 22), patrol and narcotics detection dogs (P-NDD; n = 15), and vapor wake dogs (VWD-E; n = 9)...
2017: PloS One
https://www.readbyqxmd.com/read/28932201/the-placental-microbiota-is-altered-among-subjects-with-gestational-diabetes-mellitus-a-pilot-study
#2
Jia Zheng, Xinhua Xiao, Qian Zhang, Lili Mao, Miao Yu, Jianping Xu, Tong Wang
Gestational diabetes mellitus (GDM) has significant implications for the future health of the mother and child. However, the associations between human placental microbiota and GDM are poorly understood. We aimed to profile the placental microbiota of GDM and further define whether or not certain placental microbiota taxon correlates with specific clinical characteristics. Placenta were collected from GDM women and women with normal pregnancies (n = 10, in each group) consecutively recruited at Peking Union Medical College Hospital...
2017: Frontiers in Physiology
https://www.readbyqxmd.com/read/28929202/intestinal-microbiota-of-white-shrimp-penaeus-vannamei-under-intensive-cultivation-conditions-in-ecuador
#3
Oreste Gainza, Carolina Ramírez, Alfredo Salinas Ramos, Jaime Romero
The goal of the study was to characterize the intestinal tract bacterial microbiota composition of Penaeus vannamei in intensive commercial ponds in Ecuador, comparing two shrimp-farming phases: nursery and harvest. Bacterial microbiota was examined by sequencing amplicons V2-V3 of the 16S rRNA using Ion Torrent technology. Archaea sequences were detected in both phases. Sequence analyses revealed quantitative and qualitative differences between the nursery phase and the harvest phase in shrimp intestinal microbiota composition...
September 20, 2017: Microbial Ecology
https://www.readbyqxmd.com/read/28928728/comparative-analysis-of-the-gut-microbiota-composition-between-captive-and-wild-forest-musk-deer
#4
Yimeng Li, Xiaolong Hu, Shuang Yang, Juntong Zhou, Tianxiang Zhang, Lei Qi, Xiaoning Sun, Mengyuan Fan, Shanghua Xu, Muha Cha, Meishan Zhang, Shaobi Lin, Shuqiang Liu, Defu Hu
The large and complex gut microbiota in animals has profound effects on feed utilization and metabolism. Currently, gastrointestinal diseases due to dysregulated gut microbiota are considered important factors that limit growth of the captive forest musk deer population. Compared with captive forest musk deer, wild forest musk deer have a wider feeding range with no dietary limitations, and their gut microbiota are in a relatively natural state. However, no reports have compared the gut microbiota between wild and captive forest musk deer...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28928727/composted-cattle-manure-increases-microbial-activity-and-soil-fertility-more-than-composted-swine-manure-in-a-submerged-rice-paddy
#5
Suvendu Das, Seung Tak Jeong, Subhasis Das, Pil Joo Kim
Livestock waste composts with minimum inorganic fertilizer as a soil amendment in low-input intensive farming are a feasible agricultural practice to improve soil fertility and productivity and to mitigate soil degradation. The key benefits of the practice rely on the activities of soil microorganisms. However, the role of different livestock composts [composted cattle manure (CCM) vs. composted swine manure (CSM)] on soil microbes, their activities and the overall impact on soil fertility and productivity in a flooded paddy remains elusive...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28927227/enteric-microbiome-profiles-during-a-randomized-phase-2-clinical-trial-of-surotomycin-versus-vancomycin-for-the-treatment-of-clostridium-difficile-infection
#6
Kristine Cannon, Brendan Byrne, Jennifer Happe, Kaiyu Wu, Linda Ward, Laurent Chesnel, Thomas Louie
Objectives: The effects of surotomycin (CB-183,315, MK-4261), a bactericidal cyclic lipopeptide, and vancomycin, the current standard-of-care for Clostridium difficile infection (CDI), on intestinal pathogens and microbiota were evaluated parallel to a Phase 2 randomized, double-blind clinical trial. Methods: The single-centre cohort included 26 patients receiving surotomycin [125 or 250 mg twice daily ( n  =   9 each)] or oral vancomycin [125 mg four times daily ( n  =   8)] for 10 days...
September 12, 2017: Journal of Antimicrobial Chemotherapy
https://www.readbyqxmd.com/read/28922800/changes-in-fibre-adherent-and-fluid-associated-microbial-communities-and-fermentation-profiles-in-the-rumen-of-cattle-fed-diets-differing-in-hay-quality-and-concentrate-amount
#7
Fenja Klevenhusen, Renee M Petri, Maria-Theresia Kleefisch, Ratchaneewan Khiaosa-Ard, Barbara U Metzler-Zebeli, Qendrim Zebeli
The rumen microbiota enable important metabolic functions to the host cattle. Feeding of starch-rich concentrate feedstuffs to cattle has been demonstrated to increase the risk of metabolic disorders and to significantly alter the rumen microbiome. Thus, alternative feeding strategies like the use of high-quality hay, rich in sugars, as an alternative energy source need to be explored. The aim of this study was to investigate changes in rumen microbial abundances in the liquid and solid-associated fraction of cattle fed two hay qualities differing in sugar content with graded amounts of starchy concentrate feeds using Illumina MiSeq sequencing and quantitative polymerase chain reaction...
September 1, 2017: FEMS Microbiology Ecology
https://www.readbyqxmd.com/read/28922412/walker-occupancy-has-an-impact-on-changing-airborne-bacterial-communities-in-an-underground-pedestrian-space-as-small-dust-particles-increased-with-raising-both-temperature-and-humidity
#8
Torahiko Okubo, Takako Osaki, Eriko Nozaki, Akira Uemura, Kouhei Sakai, Mizue Matushita, Junji Matsuo, Shinji Nakamura, Shigeru Kamiya, Hiroyuki Yamaguchi
Although human occupancy is a source of airborne bacteria, the role of walkers on bacterial communities in built environments is poorly understood. Therefore, we visualized the impact of walker occupancy combined with other factors (temperature, humidity, atmospheric pressure, dust particles) on airborne bacterial features in the Sapporo underground pedestrian space in Sapporo, Japan. Air samples (n = 18; 4,800L/each sample) were collected at 8:00 h to 20:00 h on 3 days (regular sampling) and at early morning / late night (5:50 h to 7:50 h / 22:15 h to 24:45 h) on a day (baseline sampling), and the number of CFUs (colony forming units) OTUs (operational taxonomic units) and other factors were determined...
2017: PloS One
https://www.readbyqxmd.com/read/28920414/metagenomic-analysis-of-bacterial-community-structure-and-diversity-of-lignocellulolytic-bacteria-in-vietnamese-native-goat-rumen
#9
Huyen Thi Do, Khoa Trong Dao, Viet Khanh Hoang Nguyen, Giang Ngoc Le, Phuong Thi Mai Nguyen, Lam Tung Le, Nguyet Thu Phung, Nico van Straalen, Dick Roelofs, Hai Nam Truong
Objective: In a previous study, analysis of Illumina sequenced metagenomic DNA data of bacteria in Vietnamese goats' rumen showed a high diversity of putative lignocellulolytic genes. In this study, taxonomy speculation of microbial community and lignocellulolytic bacteria population in the rumen was conducted to elucidate a role of bacterial structure for effective degradation of plant materials. Methods: The metagenomic data had been subjected into Basic Local Alignment Search Tool (BLASTX) algorithm and the National Center for Biotechnology Information (NCBI) non-redundant (NR) sequence database...
September 18, 2017: Asian-Australasian Journal of Animal Sciences
https://www.readbyqxmd.com/read/28920403/comparison-of-bacterial-communities-in-leachate-from-decomposing-bovine-carcasses
#10
Seung-Hak Yang, Hee Kwon Ahn, Bong Soo Kim, Sun Sik Chang, Ki Yong Chung, Eun Mi Lee, Kwang Seok Ki, Eung Gi Kwon
Objective: Burial is associated with environmental effects such as the contamination of ground or surface water with biological materials generated during the decomposition process. Therefore, bacterial communities in leachates originating from the decomposing bovine carcasses were investigated. Methods: To understand the process of bovine (Hanwoo) carcass decomposition, we simulated burial using a lab-scale reactor with a volume of 5.15 m3. Leachate samples from 3 carcasses were collected using a peristaltic pump once a month for a period of 5 months, and bacterial communities in samples were identified by pyrosequencing of the 16S rRNA gene...
September 18, 2017: Asian-Australasian Journal of Animal Sciences
https://www.readbyqxmd.com/read/28916564/modulation-of-the-gut-microbiome-a-systematic-review-of-the-effect-of-bariatric-surgery
#11
Yan Guo, Zhi-Ping Huang, Chao-Qian Liu, Lin Qi, Yuan Sheng, Da-Jin Zou
OBJECTIVE: Bariatric surgery is recommended for patients with obesity and type 2 diabetes. Recent evidence suggested a strong connection between gut microbiota and bariatric surgery. DESIGN: Systematic review. METHODS: The PubMed and OVID Embase were used and articles concerning bariatric surgery and gut microbiota were screened. The main outcome measures were alterations of gut microbiota after bariatric surgery and correlations between gut microbiota and host metabolism...
September 15, 2017: European Journal of Endocrinology
https://www.readbyqxmd.com/read/28916375/bacterial-community-in-ancient-permafrost-alluvium-at-the-mammoth-mountain-eastern-siberia
#12
Anatoli Brouchkov, Marsel Kabilov, Svetlana Filippova, Olga Baturina, Victor Rogov, Valery Galchenko, Andrey Mulyukin, Oksana Fursova, Gennady Pogorelko
Permanently frozen (approx. 3.5Ma) alluvial Neogene sediments exposed in the Aldan river valley at the Mammoth Mountain (Eastern Siberia) are unique, ancient, and poorly studied permafrost environments. So far, the structure of the indigenous bacterial community has remained unknown. Use of 16S metagenomic analysis with total DNA isolation using DNA Spin Kit for Soil (MO-Bio) and QIAamp DNA Stool Mini Kit (Qiagen) has revealed the major and minor bacterial lineages in the permafrost alluvium sediments. In sum, 61 Operational Taxonomic Units (OTUs) with 31,239 reads (Qiagen kit) and 15,404 reads (Mo-Bio kit) could be assigned to the known taxa...
September 12, 2017: Gene
https://www.readbyqxmd.com/read/28913581/investigation-on-the-anaerobic-co-digestion-of-food-waste-with-sewage-sludge
#13
Yubo Wang, Chunxiao Wang, Yulin Wang, Yu Xia, Guanghao Chen, Tong Zhang
In this laboratory-scale investigation on the applicability of the co-digestion of food waste with sewage sludge, evaluated were the effects of the single-stage versus two-stage operating modes at the hydraulic retention time (HRT) of 15 days, and the impact of HRTs: 15 days vs. 25 days, on the single-stage operation. An average volatile solid reduction (VSR) of 61% and methane yield of 314 ml/g-VS were achieved in the two-stage operation (HRT 15 days), while comparable VSR of 57% and the methane yield of 325 ml CH4/g-VS could only be detected at a longer HRT at 25 days in the single-stage operation...
September 14, 2017: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/28912815/feasibility-of-metatranscriptome-analysis-from-infant-gut-microbiota-adaptation-to-solid-foods-results-in-increased-activity-of-firmicutes-at-six-months
#14
Floor Hugenholtz, Jarmo Ritari, Lotta Nylund, Mark Davids, Reetta Satokari, Willem M de Vos
Newborns are rapidly colonized by microbes and their intestinal tracts contain highly dynamic and rapidly developing microbial communities in the first months of life. In this study, we describe the feasibility of isolating mRNA from rapidly processed faecal samples and applying deep RNA-Seq analysis to provide insight into the active contributors of the microbial community in early life. Specific attention is given to the impact of removing rRNA from the mRNA on the phylogenetic and transcriptional profiling and its analysis depth...
2017: International Journal of Microbiology
https://www.readbyqxmd.com/read/28912574/distinct-gut-microbiome-patterns-associate-with-consensus-molecular-subtypes-of-colorectal-cancer
#15
Rachel V Purcell, Martina Visnovska, Patrick J Biggs, Sebastian Schmeier, Frank A Frizelle
Colorectal cancer (CRC) is a heterogeneous disease and recent advances in subtype classification have successfully stratified the disease using molecular profiling. The contribution of bacterial species to CRC development is increasingly acknowledged, and here, we sought to analyse CRC microbiomes and relate them to tumour consensus molecular subtypes (CMS), in order to better understand the relationship between bacterial species and the molecular mechanisms associated with CRC subtypes. We classified 34 tumours into CRC subtypes using RNA-sequencing derived gene expression and determined relative abundances of bacterial taxonomic groups using 16S rRNA amplicon metabarcoding...
September 14, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28911333/profiling-bacterial-communities-by-minion-sequencing-of-ribosomal-operons
#16
Lee J Kerkhof, Kevin P Dillon, Max M Häggblom, Lora R McGuinness
BACKGROUND: An approach utilizing the long-read capability of the Oxford Nanopore MinION to rapidly sequence bacterial ribosomal operons of complex natural communities was developed. Microbial fingerprinting employs domain-specific forward primers (16S rRNA subunit), reverse primers (23S rRNA subunit), and a high-fidelity Taq polymerase with proofreading capabilities. Amplicons contained both ribosomal subunits for broad-based phylogenetic assignment (~ 3900 bp of sequence), plus the intergenic spacer (ITS) region (~ 300 bp) for potential strain-specific identification...
September 15, 2017: Microbiome
https://www.readbyqxmd.com/read/28900198/analysis-and-comparison-of-the-wolf-microbiome-under-different-environmental-factors-using-three-different-data-of-next-generation-sequencing
#17
Xiaoyang Wu, Huanxin Zhang, Jun Chen, Shuai Shang, Jiakuo Yan, Yao Chen, Xuexi Tang, Honghai Zhang
Next Generation Sequencing has been widely used to characterize the prevalence of fecal bacteria in many different species. In this study, we attempted to employ a low-cost and high-throughput sequencing model to discern information pertaining to the wolf microbiota. It is hoped that this model will allow researchers to elucidate potential protective factors in relation to endangered wolf species. We propose three high-throughput sequencing models to reveal information pertaining to the micro-ecology of the wolf...
September 12, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28898779/ozone-cathode-microbial-desalination-cell-an-innovative-option-to-bioelectricity-generation-and-water-desalination
#18
Abdolmajid Gholizadeh, Ali Asghar Ebrahimi, Mohammad Hossein Salmani, Mohammad Hassan Ehrampoush
Microbial desalination cell (MDC) is a new approach of water desalination methods, which is based on ionic species removal from water in proportion to the electric current generated by bacteria. However, the low current generation and insufficient deionization in this technology have created challenges to improve the process. Here, the performance of MDC using ozone as a new electron acceptor (O3-MDC) was evaluated versus another operated independently with oxygen (O2-MDC). Results showed the maximum open-circuit voltages of 628 and 1331 mV for 20 g L(-1) NaCl desalination in O2-MDC and O3-MDC, respectively...
September 4, 2017: Chemosphere
https://www.readbyqxmd.com/read/28898440/low-lactobacilli-abundance-and-polymicrobial-diversity-in-the-lower-reproductive-tract-of-female-rhesus-monkeys-do-not-compromise-their-reproductive-success
#19
Wellington Z Amaral, Gabriele R Lubach, Amita Kapoor, Alexandra Proctor, Gregory J Phillips, Mark Lyte, Christopher L Coe
The lower reproductive tract of nonhuman primates is colonized with a diverse microbiota, resembling bacterial vaginosis (BV), a gynecological condition associated with negative reproductive outcomes in women. Our 4 aims were to: (i) assess the prevalence of low Lactobacilli and a BV-like profile in female rhesus monkeys; (ii) quantify cytokines in their cervicovaginal fluid (CVF); (iii) examine the composition and structure of their mucosal microbiota with culture-independent sequencing methods; and (iv) evaluate the potential influence on reproductive success...
September 12, 2017: American Journal of Primatology
https://www.readbyqxmd.com/read/28894921/structural-and-functional-variability-in-root-associated-bacterial-microbiomes-of-cd-zn-hyperaccumulator-sedum-alfredii
#20
Jipeng Luo, Qi Tao, Keren Wu, Jinxing Li, Jie Qian, Yongchao Liang, Xiaoe Yang, Tingqiang Li
Interactions between roots and microbes affect plant's resistance to abiotic stress. However, the structural and functional variation of root-associated microbiomes and their effects on metal accumulation in hyperaccumulators remain poorly understood. Here, we characterize the root-associated microbiota of a hyperaccumulating (HP) and a non-hyperaccumulating (NHP) genotype of Sedum alfredii by 16S ribosomal RNA gene profiling. We show that distinct microbiomes are observed in four spatially separable compartments: the bulk soil, rhizosphere, rhizoplane, and endosphere...
September 11, 2017: Applied Microbiology and Biotechnology
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