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https://www.readbyqxmd.com/read/28109207/rhodohalobacter-halophilus-gen-nov-sp-nov-a-moderately-halophilic-member-of-the-family-balneolaceae
#1
Jun Xia, Zhi-Hong Xie, Christopher A Dunlap, Alejandro P Rooney, Zong-Jun Du
A novel Gram-stain-negative, rod-shaped, facultatively anaerobic, oxidase-negative and catalase-positive bacterium, designated JZ3C29T, was isolated from a saltern located in Feicheng, China. Strain JZ3C29T was tolerant to moderate salt conditions. Optimal growth occurred at 40 °C (range 20-50 °C) and pH 7.5-8.5 (range pH 7.0-9.0) with 8-10 % (w/v) NaCl (range 2-16 %). Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain JZ3C29T shared highest similarity with Gracilimonas tropica CL-CB462T (90...
January 19, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28103814/the-respiratory-microbiome-in-bronchial-mucosa-and-secretions-from-severe-ige-mediated-asthma-patients
#2
Laura Millares, Guadalupe Bermudo, Vicente Pérez-Brocal, Christian Domingo, Marian Garcia-Nuñez, Xavier Pomares, Andrés Moya, Eduard Monsó
BACKGROUND: The bronchial microbiome in chronic lung diseases presents an abnormal pattern, but its microbial composition and regional differences in severe asthma have not been sufficiently addressed. The aim of the study was to describe the bacterial community in bronchial mucosa and secretions of patients with severe chronic asthma chronically treated with corticosteroids in addition to usual care according to Global Initiative for Asthma. Bacterial community composition was obtained by 16S rRNA gene amplification and sequencing, and functional capabilities through PICRUSt...
January 19, 2017: BMC Microbiology
https://www.readbyqxmd.com/read/28102441/the-effect-of-land-use-on-bacterial-communities-in-saline-alkali-soil
#3
Mu Peng, Hongbai Jia, Qiuyu Wang
Saline-alkali soil can inhibit the growth of crops as a consequence of cellular damage through oxidation of lipids and proteins and degradation of nucleic acids, ultimately leading to cell death. The bacterial community composition and diversity in saline-alkali soil across different land uses, such as agricultural land, forest land, and grassland, were evaluated using high-throughput sequencing of the bacterial 16S rRNA gene. Significant differences in the soil physicochemical characteristics and bacterial community among different land uses were observed in this study...
January 19, 2017: Current Microbiology
https://www.readbyqxmd.com/read/28097073/handling-stress-may-confound-murine-gut-microbiota-studies
#4
Cary R Allen-Blevins, Xiaomeng You, Katie Hinde, David A Sela
BACKGROUND: Accumulating evidence indicates interactions between human milk composition, particularly sugars (human milk oligosaccharides or HMO), the gut microbiota of human infants, and behavioral effects. Some HMO secreted in human milk are unable to be endogenously digested by the human infant but are able to be metabolized by certain species of gut microbiota, including Bifidobacterium longum subsp. infantis (B. infantis), a species sensitive to host stress (Bailey & Coe, 2004). Exposure to gut bacteria like B...
2017: PeerJ
https://www.readbyqxmd.com/read/28097050/microbial-communities-mediating-algal-detritus-turnover-under-anaerobic-conditions
#5
Jessica M Morrison, Chelsea L Murphy, Kristina Baker, Richard M Zamor, Steve J Nikolai, Shawn Wilder, Mostafa S Elshahed, Noha H Youssef
BACKGROUND: Algae encompass a wide array of photosynthetic organisms that are ubiquitously distributed in aquatic and terrestrial habitats. Algal species often bloom in aquatic ecosystems, providing a significant autochthonous carbon input to the deeper anoxic layers in stratified water bodies. In addition, various algal species have been touted as promising candidates for anaerobic biogas production from biomass. Surprisingly, in spite of its ecological and economic relevance, the microbial community involved in algal detritus turnover under anaerobic conditions remains largely unexplored...
2017: PeerJ
https://www.readbyqxmd.com/read/28095182/effect-of-intermittent-aeration-on-microbial-diversity-in-an-intermittently-aerated-ifas-reactor-treating-municipal-wastewater-a-field-study
#6
Akansha Bhatia, Nitin Kumar Singh, Timsi Bhando, Ranjana Pathania, Absar Ahmad Kazmi
In the present study, the effect of three intermittent aeration (IA) cycles on treatment performance and microbial diversity was investigated in an integrated fixed film activated sludge (IFAS) reactor treating municipal wastewater. The results showed that IA strategies were able to achieve efficient removal of organics and nitrogen ranging between 90 and 95% and 70 and 80%, respectively, however the phosphorus removal was found to be inversely proportional to the duration of aeration off time in each IA cycle...
January 17, 2017: Journal of Environmental Science and Health. Part A, Toxic/hazardous Substances & Environmental Engineering
https://www.readbyqxmd.com/read/28093107/characterization-and-identification-of-microbial-communities-in-bovine-necrotic-vulvovaginitis
#7
N Y Shpigel, L Adler-Ashkenazy, S Scheinin, T Goshen, A Arazi, Z Pasternak, Y Gottlieb
Bovine necrotic vulvovaginitis (BNVV) is a severe and potentially fatal disease of post-partum cows that emerged in Israel after large dairy herds were merged. While post-partum cows are commonly affected by mild vulvovaginitis (BVV), in BNVV these benign mucosal abrasions develop into progressive deep necrotic lesions leading to sepsis and death if untreated. The etiology of BNVV is still unknown and a single pathogenic agent has not been found. We hypothesized that BNVV is a polymicrobial disease where the normally benign vaginal microbiome is remodeled and affects the local immune response...
January 2017: Veterinary Journal
https://www.readbyqxmd.com/read/28091993/bacterial-community-structure-and-prevalence-of-pusillimonas-like-bacteria-in-aged-landfill-leachate
#8
Nikolaos Remmas, Charikleia Roukouni, Spyridon Ntougias
Although several works have been performed from an engineering point of view, a limited number of studies have focused on microbial communities involved in the humification of aged landfill leachates. In this work, cultivation techniques, next-generation sequencing, and phospholipid fatty acid analysis were adopted to decrypt the diversity and the ecophysiological properties of the dominant microbiota in aged landfill leachate. Based on Illumina sequencing, Betaproteobacteria, Bacteroidetes, Actinobacteria, and Alphaproteobacteria dominated the aged landfill leachate...
January 13, 2017: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/28078797/in-situ-incubation-of-iron-sulfur-mineral-reveals-a-diverse-chemolithoautotrophic-community-and-a-new-biogeochemical-role-for-thiomicrospira
#9
Roman A Barco, Colleen L Hoffman, Gustavo A Ramírez, Brandy M Toner, Katrina J Edwards, Jason B Sylvan
Sulfide mineral precipitation occurs at mid-ocean ridge (MOR) spreading centers, both in the form of plume particles and seafloor massive sulfide structures. A common constituent of MOR is the iron-bearing sulfide mineral pyrrhotite, which was chosen as a substrate for in-situ incubation studies in shallow waters of Catalina Island, CA to investigate the colonization of iron-oxidizing bacteria. Microbial community datasets were obtained from in-situ incubated pyrrhotite, allowing for direct comparison to microbial communities of iron-sulfides from active and inactive chimneys in deep-sea environments...
January 12, 2017: Environmental Microbiology
https://www.readbyqxmd.com/read/28077872/structural-basis-for-nutrient-acquisition-by-dominant-members-of-the-human-gut-microbiota
#10
Amy J Glenwright, Karunakar R Pothula, Satya P Bhamidimarri, Dror S Chorev, Arnaud Baslé, Susan J Firbank, Hongjun Zheng, Carol V Robinson, Mathias Winterhalter, Ulrich Kleinekathöfer, David N Bolam, Bert van den Berg
The human large intestine is populated by a high density of microorganisms, collectively termed the colonic microbiota, which has an important role in human health and nutrition. The survival of microbiota members from the dominant Gram-negative phylum Bacteroidetes depends on their ability to degrade dietary glycans that cannot be metabolized by the host. The genes encoding proteins involved in the degradation of specific glycans are organized into co-regulated polysaccharide utilization loci, with the archetypal locus sus (for starch utilisation system) encoding seven proteins, SusA-SusG...
January 19, 2017: Nature
https://www.readbyqxmd.com/read/28073540/phylogenetic-structure-of-bacterial-assemblages-co-occurring-with-ostreopsis-cf-ovata-bloom
#11
Silvana Vanucci, Flavio Guidi, Rossella Pistocchi, Richard A Long
Extensive blooms of the toxic epiphytic/benthic dinoflagellate Ostreopsis cf. ovata are being reported with increasing frequency and spatial distribution in temperate coastal regions including the Mediterranean. These blooms are of human and environmental health concern due to the production of isobaric palytoxin and a wide range of ovatoxins by Ostreopsis cf. ovata. Bacterial-microalgal interactions are important regulators in algal bloom dynamics and potentially toxin dynamics. This study investigated the bacterial assemblages co-occurring with O...
May 2016: Harmful Algae
https://www.readbyqxmd.com/read/28072880/characterisation-of-early-life-fecal-microbiota-in-susceptible-and-healthy-pigs-to-post-weaning-diarrhoea
#12
Samir Dou, Pascale Gadonna-Widehem, Véronique Rome, Dounia Hamoudi, Larbi Rhazi, Lyes Lakhal, Thibaut Larcher, Narges Bahi-Jaber, Arturo Pinon-Quintana, Alain Guyonvarch, Isabelle L E Huërou-Luron, Latifa Abdennebi-Najar
Early-life microbial exposure is of particular importance to growth, immune system development and long-lasting health. Hence, early microbiota composition is a promising predictive biomarker for health and disease but still remains poorly characterized in regards to susceptibility to diarrhoea. In the present study, we aimed to assess if gut bacterial community diversity and composition during the suckling period were associated with differences in susceptibility of pigs to post-weaning diarrhoea. Twenty piglets from 5 sows (4 piglets / litter) were weaned in poor housing conditions to challenge their susceptibility to post-weaning diarrhoea...
2017: PloS One
https://www.readbyqxmd.com/read/28070678/trna-misacylation-with-methionine-in-the-mouse-gut-microbiome-in-situ
#13
Michael H Schwartz, Tao Pan
Global protein mistranslation with methionine has been shown to be a conserved biological process that affords distinct functional advantages in all three domains of life. In all instances, methionine mistranslation occurs through a regulated process where low-fidelity forms of methionyl-tRNA synthetase are conditionally induced to mischarge non-methionyl-tRNAs with methionine followed by the utilization of the misacylated tRNAs in translation. In mammals, methionine mistranslation contributes to oxidative stress response; in the hyperthermophilic archaeon Aeropyrum pernix, methionine mistranslation produces proteins that are better adapted to low temperature growth; in E...
January 9, 2017: Microbial Ecology
https://www.readbyqxmd.com/read/28070331/effects-of-bacillus-subtilis-csl2-on-the-composition-and-functional-diversity-of-the-faecal-microbiota-of-broiler-chickens-challenged-with-salmonella-gallinarum
#14
Ju Kyoung Oh, Edward Alain B Pajarillo, Jong Pyo Chae, In Ho Kim, Dong Soo Yang, Dae-Kyung Kang
BACKGROUND: The chicken gastrointestinal tract contains a diverse microbiota whose composition and structure play important roles in gut functionality. In this study, microbial shifts resulting from feed supplementation with Bacillus subtilis CSL2 were evaluated in broilers challenged and unchallenged with Salmonella Gallinarum. To analyse bacterial community composition and functionality, 454 GS-FLX pyrosequencing of 16S rRNA gene amplicons was performed. RESULTS: The Quantitative Insights into Microbial Ecology (QIIME) pipeline was used to analyse changes in the faecal microbiota over a 24-h period...
2017: Journal of Animal Science and Biotechnology
https://www.readbyqxmd.com/read/28070087/postnatal-changes-in-the-relative-abundance-of-intestinal-lactobacillus-spp-in-newborn-calves
#15
Tadashi Takino, Yuko Kato-Mori, Daisuke Motooka, Shota Nakamura, Tetsuya Iida, Katsuro Hagiwara
The intestinal microbiota of newborn calves changes during the early postnatal period and influences their health and immune function. We studied the compositional changes in the intestinal microbiome of newborn calves during the first week after birth by metagenomic analysis. In feces from newborn calves, we identified 4 bacterial phyla, namely, Actinobacteria, Bacteroidetes, Firmicutes, and Proteobacteria. The relative abundance of Lactobacillaceae significantly increased from day 1 to day 7. We evaluated Lactobacillus spp...
January 8, 2017: Journal of Veterinary Medical Science
https://www.readbyqxmd.com/read/28069559/proteomic-insights-into-mannan-degradation-and-protein-secretion-by-the-forest-floor-bacterium-chitinophaga-pinensis
#16
Johan Larsbrink, Tina R Tuveng, Phillip B Pope, Vincent Bulone, Vincent G H Eijsink, Harry Brumer, Lauren S McKee
: Together with fungi, saprophytic bacteria are central to the decomposition and recycling of biomass in forest environments. The Bacteroidetes phylum is abundant in diverse habitats, and several species have been shown to be able to deconstruct a wide variety of complex carbohydrates. The genus Chitinophaga is often enriched in hotspots of plant and microbial biomass degradation. We present a proteomic assessment of the ability of Chitinophaga pinensis to grow on and degrade mannan polysaccharides, using an agarose plate-based method of protein collection to minimise contamination with exopolysaccharides and proteins from lysed cells, and to reflect the realistic setting of growth on a solid surface...
January 6, 2017: Journal of Proteomics
https://www.readbyqxmd.com/read/28069302/biodegradation-of-the-veterinary-antibiotics-enrofloxacin-and-ceftiofur-and-associated-microbial-community-dynamics
#17
Diogo A M Alexandrino, Ana P Mucha, C Marisa R Almeida, Wei Gao, Zhongjun Jia, Maria F Carvalho
Fluoroquinolones and cephalosporins are two classes of veterinary antibiotics arising as pollutants of emerging concern. In this work, the microbial degradation of two representative antibiotics of both these classes, enrofloxacin (ENR) and ceftiofur (CEF), is reported. Biodegradation of the target antibiotics was investigated by supplementing the culture medium with ENR and CEF, individually and in mixture. Microbial inocula were obtained from rhizosphere sediments of plants derived from experimental constructed wetlands designed for the treatment of livestock wastewaters contaminated with trace amounts of these antibiotics...
January 6, 2017: Science of the Total Environment
https://www.readbyqxmd.com/read/28067829/the-cause-of-death-of-a-child-in-the-18th-century-solved-by-bone-microbiome-typing-using-laser-microdissection-and-next-generation-sequencing
#18
Valeria D'Argenio, Marielva Torino, Vincenza Precone, Giorgio Casaburi, Maria Valeria Esposito, Laura Iaffaldano, Umberto Malapelle, Giancarlo Troncone, Iolanda Coto, Paolina Cavalcanti, Gaetano De Rosa, Francesco Salvatore, Lucia Sacchetti
The history of medicine abounds in cases of mysterious deaths, especially by infectious diseases, which were probably unresolved because of the lack of knowledge and of appropriate technology. The aim of this study was to exploit contemporary technologies to try to identify the cause of death of a young boy who died from a putative "infection" at the end of the 18th century, and for whom an extraordinarily well-preserved minute bone fragment was available. After confirming the nature of the sample, we used laser microdissection to select the most "informative" area to be examined...
January 6, 2017: International Journal of Molecular Sciences
https://www.readbyqxmd.com/read/28067296/gut-microbiota-mediates-protection-against-enteropathy-induced-by-indomethacin
#19
Xue Xiao, Geicho Nakatsu, Ye Jin, Sunny Wong, Jun Yu, James Y W Lau
Non-steroidal anti-inflammatory drugs (NSAIDs) can cause significant small bowel injuries. The role of gut microbiota in this NSAID-induced enteropathy is poorly understood. We studied the dynamic changes in gut microbiota following indomethacin administration in mice, and investigated the effects of these adaptive changes on subsequent NSAID-induced enteropathy. The changes in gut microbiota were studied using 16S rRNA sequencing, and the effects of such changes were investigated using antibiotics and a faecal transplantation model...
January 9, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28065570/conservative-tracer-bromide-inhibits-pesticide-mineralisation-in-soil
#20
Tina B Bech, Annette E Rosenbom, Sebastian R Sørensen, Carsten S Jacobsen
Bromide is a conservative tracer that is often applied with non-conservative solutes such as pesticides to estimate their retardation in the soil. It has been applied in concentrations of up to 250 g Br L(-1), levels at which the growth of single-celled organisms can be inhibited. Bromide applications may therefore affect the biodegradation of non-conservative solutes in soil. The present study investigated the effect of potassium bromide (KBr) on the mineralisation of three pesticides - glyphosate, MCPA and metribuzin - in four agricultural A-horizon soils...
January 5, 2017: Environmental Pollution
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