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https://www.readbyqxmd.com/read/28211884/responses-of-spatial-temporal-dynamics-of-bacterioplankton-community-to-large-scale-reservoir-operation-a-case-study-in-the-three-gorges-reservoir-china
#1
Zhe Li, Lunhui Lu, Jinsong Guo, Jixiang Yang, Jiachao Zhang, Bin He, Linlin Xu
Large rivers are commonly regulated by damming, yet the effects of such disruption on bacterioplankton community structures have not been adequately studied. The aim of this study was to explore the biogeographical patterns present under dam regulation and to uncover the major drivers structuring bacterioplankton communities. Bacterioplankton assemblages in the Three Gorges Reservoir (TGR) were analyzed using Illumina Miseq sequencing by comparing seven sites located within the TGR before and after impoundment...
February 13, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28211847/syntrophic-linkage-between-predatory-carpediemonas-and-specific-prokaryotic-populations
#2
Emmo Hamann, Halina E Tegetmeyer, Dietmar Riedel, Sten Littmann, Soeren Ahmerkamp, Jianwei Chen, Philipp F Hach, Marc Strous
Most anoxic environments are populated by small (<10 μm) heterotrophic eukaryotes that prey on different microbial community members. How predatory eukaryotes engage in beneficial interactions with other microbes has rarely been investigated so far. Here, we studied an example of such an interaction by cultivating the anerobic marine flagellate, Carpediemonas frisia sp. nov. (supergroup Excavata), with parts of its naturally associated microbiome. This microbiome consisted of so far uncultivated members of the Deltaproteobacteria, Bacteroidetes, Firmicutes, Verrucomicrobia and Nanoarchaeota...
February 17, 2017: ISME Journal
https://www.readbyqxmd.com/read/28210255/high-prevalence-of-gammaproteobacteria-in-the-sediments-of-admiralty-bay-and-north-bransfield-basin-northwestern-antarctic-peninsula
#3
Diego C Franco, Camila N Signori, Rubens T D Duarte, Cristina R Nakayama, Lúcia S Campos, Vivian H Pellizari
Microorganisms dominate most Antarctic marine ecosystems, in terms of biomass and taxonomic diversity, and play crucial role in ecosystem functioning due to their high metabolic plasticity. Admiralty Bay is the largest bay on King George Island (South Shetland Islands, Antarctic Peninsula) and a combination of hydro-oceanographic characteristics (bathymetry, sea ice and glacier melting, seasonal entrance of water masses, turbidity, vertical fluxes) create conditions favoring organic carbon deposition on the seafloor and microbial activities...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28208114/efficient-degradation-of-chlorimuron-ethyl-by-a-bacterial-consortium-and-shifts-in-the-aboriginal-microorganism-community-during-the-bioremediation-of-contaminated-soil
#4
Chunyan Li, Tongyang Lv, Wanjun Liu, Hailian Zang, Yi Cheng, Dapeng Li
Excessive application of chlorimuron-ethyl has led to soil contamination and limited crop rotation; therefore, tactics to decrease and eliminate residual chlorimuron-ethyl in the environment have attracted increasing attention. In this study, two chlorimuron-ethyl-degrading bacterial strains (Rhodococcus sp. D310-1; Enterobacter sp. D310-5) were used to ferment and prepare a chlorimuron-ethyl-degrading bacterial consortium. To improve the degradation efficiency of the bacterial consortium, the cultivation conditions were optimized using response surface methodology (RSM)...
February 13, 2017: Ecotoxicology and Environmental Safety
https://www.readbyqxmd.com/read/28207851/impact-of-levels-of-total-digestible-nutrients-on-microbiome-enzyme-profile-and-degradation-of-feeds-in-buffalo-rumen
#5
Anju Kala, D N Kamra, Avinash Kumar, Neeta Agarwal, L C Chaudhary, C G Joshi
The present study was aimed at understanding a shift in rumen microbiome of buffaloes fed various levels of total digestible nutrients. To understand the process, the metagenomics of rumen microbes, in vivo and in vitro rumen fermentation studies were carried out. Three rumen fistulated adult male Murrah buffaloes were fed three isonitrogenous diets varying in total digestible nutrients (70, 85 and 100% of TDN requirement) in 3X3 switch over design. On dry matter basis, wheat straw/ roughage content were 81, 63 and 51% and that of maize grain was 8, 16 and 21% in three diets respectively...
2017: PloS One
https://www.readbyqxmd.com/read/28207812/of-the-milk-sugars-galactose-but-not-prebiotic-galacto-oligosaccharide-improves-insulin-sensitivity-in-male-sprague-dawley-rats
#6
Priska Stahel, Julie J Kim, Changting Xiao, John P Cant
BACKGROUND: Consumption of dairy products reduces risk of type 2 diabetes. Milk proteins and fats exhibit anti-diabetic properties but milk sugars have been studied little in this context. Galactose from milk lactose is readily converted to glycogen in the liver but its effects on insulin sensitivity have not been assessed. Prebiotic oligosaccharides from milk alter gut microbiota and can thereby influence host metabolism. Our objective was to assess the effect on insulin sensitivity of dietary galactose compared to glucose and fructose, and fermentable galacto-oligosaccharides compared to non-fermentable methylcellulose...
2017: PloS One
https://www.readbyqxmd.com/read/28205313/genetic-analyses-unravel-the-crucial-role-of-a-horizontally-acquired-alginate-lyase-for-brown-algal-biomass-degradation-by-zobellia-galactanivorans
#7
Yongtao Zhu, François Thomas, Robert Larocque, Nan Li, Delphine Duffieux, Lionel Cladière, Florent Souchaud, Gurvan Michel, Mark J McBride
Comprehension of the degradation of macroalgal polysaccharides suffers from the lack of genetic tools for model marine bacteria, despite their importance for coastal ecosystem functions. We developed such tools for Zobellia galactanivorans, an algae-associated flavobacterium that digests many polysaccharides, including alginate. These tools were used to investigate the biological role of AlyA1, the only Z. galactanivorans alginate lyase known to be secreted in soluble form and to have a recognizable carbohydrate-binding domain...
February 15, 2017: Environmental Microbiology
https://www.readbyqxmd.com/read/28205101/microbial-community-compositions-in-different-functional-zones-of-carrousel-oxidation-ditch-system-for-domestic-wastewater-treatment
#8
Dong Xu, Sitong Liu, Qian Chen, Jinren Ni
The microbial community diversity in anaerobic-, anoxic- and oxic-biological zones of a conventional Carrousel oxidation ditch system for domestic wastewater treatment was systematically investigated. The monitored results of the activated sludge sampled from six full-scale WWTPs indicated that Proteobacteria, Chloroflexi, Bacteroidetes, Actinobacteria, Verrucomicrobia, Acidobacteria and Nitrospirae were dominant phyla, and Nitrospira was the most abundant and ubiquitous genus across the three biological zones...
December 2017: AMB Express
https://www.readbyqxmd.com/read/28199741/melatonin-prevents-obesity-through-modulation-of-gut-microbiota-in-mice
#9
Pengfei Xu, Jialin Wang, Fan Hong, Sheng Wang, Xi Jin, Tingting Xue, Li Jia, Yonggong Zhai
Excess weight and obesity are severe public health threats worldwide. Recent evidence demonstrates that gut microbiota dysbiosis contributes to obesity and its comorbidities. The body weight-reducing and energy balancing effects of melatonin have been reported in several studies, but to date, no investigations toward examining whether the beneficial effects of melatonin are associated with gut microbiota have been carried out. In this study, we show that melatonin reduces body weight, liver steatosis, and low-grade inflammation as well as improving insulin resistance in high fat diet (HFD)-fed mice...
February 15, 2017: Journal of Pineal Research
https://www.readbyqxmd.com/read/28199330/comparison-of-bacterial-communities-from-lava-cave-microbial-mats-to-overlying-surface-soils-from-lava-beds-national-monument-usa
#10
Kathleen H Lavoie, Ara S Winter, Kaitlyn J H Read, Evan M Hughes, Michael N Spilde, Diana E Northup
Subsurface habitats harbor novel diversity that has received little attention until recently. Accessible subsurface habitats include lava caves around the world that often support extensive microbial mats on ceilings and walls in a range of colors. Little is known about lava cave microbial diversity and how these subsurface mats differ from microbial communities in overlying surface soils. To investigate these differences, we analyzed bacterial 16S rDNA from 454 pyrosequencing from three colors of microbial mats (tan, white, and yellow) from seven lava caves in Lava Beds National Monument, CA, USA, and compared them with surface soil overlying each cave...
2017: PloS One
https://www.readbyqxmd.com/read/28197985/inonotus-obliquus-polysaccharide-regulates-gut-microbiota-of-chronic-pancreatitis-in-mice
#11
Yang Hu, Chunying Teng, Sumei Yu, Xin Wang, Jinsong Liang, Xin Bai, Liying Dong, Tao Song, Min Yu, Juanjuan Qu
Polysaccharide is efficient in attenuation of metabolic ailments and modulation of gut microbiota as prebiotics. The therapeutic effect of Inonotus obliquus polysaccharide (IOP) on chronic pancreatitis (CP) in mice has been validated in our previous study. However, it is not clear whether IOP is conducive to maintaining the homeostasis between gut microbiota and host. The aim of this study is to testify the potential effects of IOP on gut microbiota composition and diversity in mice with CP. The changes in glutathione peroxidase (GSH-PX), total antioxidant capacity (TAOC), tumor necrosis factor alpha (TNF-α), transforming growth factor beta (TGF-β), lipase and trypsin levels were measured by commercial assay kits, meanwhile the gut microbiota composition and diversity were analyzed by high throughput sequencing...
December 2017: AMB Express
https://www.readbyqxmd.com/read/28188207/use-of-endophytic-and-rhizosphere-bacteria-to-improve-phytoremediation-of-arsenic-contaminated-industrial-soils-by-autochthonous-betula-celtiberica
#12
Victoria Mesa, Alejandro Navazas, Ricardo González-Gil, Aida González, Nele Weyens, Béatrice Lauga, Jose Luis R Gallego, Jesús Sánchez, Ana Isabel Peláez
The aim of the study was to investigate the potential of indigenous arsenic-tolerant bacteria to enhance arsenic phytoremediation by autochthonous pseudometallophyte Betula celtiberica The first goal was to perform an initial analysis of the entire rhizosphere and endophytic bacterial communities of the above-named accumulator plant, including the cultivable bacterial species. B. celtiberica's microbiome was dominated by taxa related to Flavobacteriales, Burkholderiales, and Pseudomonadales, specially the Pseudomonas and Flavobacterium genera...
February 10, 2017: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/28188105/microbial-community-composition-and-function-in-a-pilot-scale-anaerobic-anoxic-aerobic-combined-process-for-the-treatment-of-traditional-chinese-medicine-wastewater
#13
Longyi Lv, Weiguang Li, Chuandong Wu, Liqiang Meng, Wen Qin
Biodegradation of traditional Chinese medicine (TCM) wastewater was investigated in a pilot-scale anaerobic-anoxic-aerobic combined process, which was composed of an expanded granular sludge blanket (EGSB) reactor, a hydrolysis acidification (HA) reactor and a biological contact oxidation (BCO) reactor. In stable stage, the average values of COD and color in the combined process effluent were 45.7mgL(-1) and 13 times, respectively. Excellent linear relations (R(2)>0.915) were achieved between color and UV254 at three color levels...
January 30, 2017: Bioresource Technology
https://www.readbyqxmd.com/read/28183172/dynamic-changes-of-yak-bos-grunniens-gut-microbiota-during-growth-revealed-by-pcr-dgge-and-metagenomics
#14
Yuanyang Nie, Zhiwei Zhou, Jiuqiang Guan, Baixue Xia, Xiaolin Luo, Yang Yang, Yu Fu, Qun Sun
Objective: To understand the dynamic structure, function, and influence on nutrient metabolism in hosts, it was crucial to assess the genetic potential of gut microbial community in yaks of different ages. Method: The denaturing gradient gel electrophoresis (DGGE) profiles and Illumina-based metagenomic sequencing on colon content of 15 semi-domestic yaks were investigated. Unweighted pairwise grouping method with mathematical averages (UPGMA) clustering and principal component analysis (PCA) were used to analize the DGGE fingerprint...
January 26, 2017: Asian-Australasian Journal of Animal Sciences
https://www.readbyqxmd.com/read/28182658/comparison-of-the-microbial-population-in-rabbits-and-guinea-pigs-by-next-generation-sequencing
#15
Edward J Crowley, Jonathan M King, Toby Wilkinson, Hilary J Worgan, Kathryn M Huson, Michael T Rose, Neil R McEwan
This study aimed to determine the microbial composition of faeces from two groups of caecotrophagic animals; rabbits and guinea pigs. In addition the study aimed to determine the community present in the different organs in the rabbit. DNA was extracted from seven of the organs in wild rabbits (n = 5) and from faecal samples from domesticated rabbits (n = 6) and guinea pigs (n = 6). Partial regions of the small ribosomal sub-unit were amplified by PCR and then the sequences present in each sample were determined by next generation sequencing...
2017: PloS One
https://www.readbyqxmd.com/read/28181116/diverse-microbial-communities-in-non-aerated-compost-teas-suppress-bacterial-wilt
#16
W K Mengesha, S M Powell, K J Evans, K M Barry
Non-aerated compost teas (NCTs) are water extracts of composted organic materials and are used to suppress soil borne and foliar disease in many pathosystems. Greenhouse trials were used to test the effectiveness of NCTs to suppress potato bacterial wilt caused by Ralstonia solanacearum on plants grown in soils inoculated with a virulent isolate of the pathogen (biovar II). NCTs prepared from matured compost sources: agricultural waste (AWCT), vermicompost (VCT) and solid municipal waste (SMWCT) were evaluated at three initial application times (7 days before inoculation, at time of inoculation and 7 days after inoculation) prior to weekly applications, in a randomized complete-block design...
March 2017: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28181098/effect-of-aging-on-the-composition-of-fecal-microbiota-in-donors-for-fmt-and-its-impact-on-clinical-outcomes
#17
Rohit Anand, Yang Song, Shashank Garg, Mohit Girotra, Amitasha Sinha, Anita Sivaraman, Laila Phillips, Sudhir K Dutta
BACKGROUND: Fecal microbiota transplantation (FMT) is emerging as an effective therapy for the treatment of recurrent Clostridium difficile infection (RCDI). Selecting an appropriate donor is vital to the success of FMT. However, the relationship between age of donors and the efficacy of FMT has not been examined to date. The aim of this study was to examine the effect of age of healthy donors on their fecal microbiota and assess the impact of these changes on the clinical efficacy of FMT...
February 8, 2017: Digestive Diseases and Sciences
https://www.readbyqxmd.com/read/28177796/bacterial-communities-in-sediment-of-a-mediterranean-marine-protected-area
#18
Valentina Catania, Gianluca Sarà, Luca Settanni, Paola Quatrini
Biodiversity is crucial in preservation of ecosystems, and bacterial communities play an indispensable role for the functioning of marine ecosystems. The Mediterranean Marine Protected Area (MPA) "Capo Gallo-Isola delle Femmine" was instituted to preserve marine biodiversity. The bacterial diversity associated to MPA sediment was compared with that from sediment of an adjacent harbor exposed to intense nautical traffic. MPA sediment showed higher diversity in respect to the impacted site. A 16S rDNA clone library of the MPA sediment allowed the identification of 7 phyla, Proteobacteria (78%), Firmicutes (11%), Acidobacteria (3%), Actinobacteria (3%), Bacteroidetes (2%), Planctomycetes (2%) and Cyanobacteria (1%)...
December 8, 2016: Canadian Journal of Microbiology
https://www.readbyqxmd.com/read/28177784/effects-of-several-in-feed-antibiotic-combinations-on-the-abundance-and-diversity-of-fecal-microbes-in-weaned-pigs
#19
Huizhi Li, Tingting Liang, Qingpo Chu, Feilong Xu, Yuan Li, Lingling Fu, Bo Zhou
To characterize the effects of several subtherapeutic antibiotic combinations on the abundance and diversity of fecal microbes, 400 weaned pigs were selected and randomly assigned to 8 groups, where they were continuously fed different antibiotic combinations for 28 days. Then, a total of 48 pigs were randomly selected to individually collect the feces for DNA extraction and 16S rRNA high-throughput sequencing. Compared with the pigs without antibiotic administration, the diversities of fecal microbes were decreased in the pigs fed chlortetracycline (CTC), olaquindox (OLA) and enramycin (ER)/ virginiamycin (VIR), where the relative abundance of the phymum Bacteroidetes and the genus Prevotella were increased...
January 24, 2017: Canadian Journal of Microbiology
https://www.readbyqxmd.com/read/28175972/changes-in-microbiota-in-rumen-digesta-and-feces-due-to-a-grain-based-subacute-ruminal-acidosis-sara-challenge
#20
Jan C Plaizier, Shucong Li, Anne Mette Danscher, Hooman Derakshani, Pia H Andersen, Ehsan Khafipour
The effects of a grain-based subacute ruminal acidosis (SARA) challenge on bacteria in the rumen and feces of lactating dairy cows were determined. Six lactating, rumen-cannulated Danish Holstein cows were used in a cross-over study with two periods. Periods included two cows on a control diet and two cows on a SARA challenge. The control diet was a total mixed ration containing 45.5% dry matter (DM), 43.8% DM neutral detergent fiber, and 19.6% DM starch. The SARA challenge was conducted by gradually substituting the control diet with pellets containing 50% wheat and 50% barley over 3 days to reach a diet containing 55...
February 8, 2017: Microbial Ecology
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