keyword
MENU ▼
Read by QxMD icon Read
search

16S rRNA

keyword
https://www.readbyqxmd.com/read/28109209/nostoc-thermotolerans-sp-nov-a-soil-dwelling-species-of-nostoc-cyanobacteria-isolated-from-madhya-pradesh-india
#1
Archana Suradkar, Chelsea Villanueva, Lira A Gaysina, Dale A Casamatta, Aniket Saraf, Gandhali Dighe, Ratnaprabha Mergu, Prashant Singh
A filamentous, soil dwelling cyanobacterial strain (9C-PS) was isolated from Mandsaur, Madhya Pradesh, India and is being described as new species of Nostoc. Extensive morphological and molecular characterization along with thorough assessment of ecology was performed. The style of filament orientation, type and nature of the sheath (e.g., distribution and visibility across the trichome), and vegetative and heterocyte cell dimensions and shape were assessed for more than a year employing both culture and naturally occurring samples...
January 19, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109208/psychromonas-aquatilis-sp-nov-isolated-from-water-samples-obtained-in-the-chilean-antarctica
#2
Peter Kämpfer, Rute Irgang, Mathías Poblete-Morales, Stefanie P Glaeser, Marcelo Cortez-San Martín, Ruben Avendaño-Herrera
One slightly beige-white pigmented, Gram-staining negative, rod-shaped bacterium, strain M1A1T, was isolated from seawater samples obtained in Fildes Bay, Antarctica (62º12´S, 58º57´W). Phylogenetic analysis based on nearly full-length 16S rRNA gene sequences showed that the isolate shared 98.4 % 16S rRNA gene sequence identity to the type strain of the species Psychromonas arctica, but less than 97 % 16S rRNA gene sequence similarities to all other Psychromonas species. DNA-DNA hybridisation (DDH) with Psychromonas arctica DSM 14288T showed low values (21 %, reciprocal 27 %)...
January 19, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109207/rhodohalobacter-halophilus-gen-nov-sp-nov-a-moderately-halophilic-member-of-the-family-balneolaceae
#3
Jun Xia, Zhi-Hong Xie, Christopher A Dunlap, Alejandro P Rooney, Zong-Jun Du
A novel Gram-stain-negative, rod-shaped, facultatively anaerobic, oxidase-negative and catalase-positive bacterium, designated JZ3C29T, was isolated from a saltern located in Feicheng, China. Strain JZ3C29T was tolerant to moderate salt conditions. Optimal growth occurred at 40 °C (range 20-50 °C) and pH 7.5-8.5 (range pH 7.0-9.0) with 8-10 % (w/v) NaCl (range 2-16 %). Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain JZ3C29T shared highest similarity with Gracilimonas tropica CL-CB462T (90...
January 19, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109206/proposal-of-mucilaginibacter-galii-sp-nov-isolated-from-leaves-of-galium-album
#4
Ebru L Aydogan, Hans-Jürgen Busse, Gerald Moser, Christoph Müller, Peter Kämpfer, Stefanie P Glaeser
A pale pink pigmented, Gram-stain-negative, rod-shaped, non-spore forming bacterial strain, PP-F2F-G47T, was isolated from the phyllosphere of the herbaceous plant Galium album. Phylogenetic analysis based on nearly full-length 16S rRNA gene sequence showed highest sequence similarity to type strains of the species Mucilaginibacter daejeonensis (96.2 %), Mucilaginibacter dorajii (95.7 %), and Mucilaginibacter phyllosphaerae (95.5 %). 16S rRNA gene-sequence similarities to all other type strains were below 95...
January 19, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109205/haloterrigena-mahii-sp-nov-an-extreme-halophilic-archaeon-from-the-solar-saltern
#5
Jiun-Yan Ding, Sheng-Chung Chen, Mei-Chin Lai, Tsai-Ling Liao
A pleomorphic, gas vesicle containing, halophilic archaeon, designated strain H13T, was isolated from the solar saltern of the Western Salt Co., Chula Vista, California, USA. Cells of strain H13T were non-motile, rod-shaped and 3-10 μm in length. The optimum growth conditions were 3.5-5.0 M NaCl, 45-55 oC, and pH range of 6.5-8.2. The major polar lipids were C20C20 and C20C25 derivatives of phosphatidylglycerol (PG), phosphatidylglycerol phosphate methyl ester (PGP-Me) and disulfated diglycosyl diether-1 (S2-DGD-1)...
January 21, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109204/aquaspirillum-soli-sp-nov-isolated-from-a-soil-sample-in-the-people-s-republic-of-china
#6
Gabriela Moya, Huan Trinh, Zheng-Fei Yan, KyungHwa Won, Jung-Eun Yang, Qi-Jun Wang, MooChang Kook, Tae-Hoo Yi
A Gram-stain-negative, smooth, opaque, white pigmented, helical-shaped and motile bacterium by means of bipolar tufts of flagella, catalase- and oxidase-positive, grew under microaerophilic conditions, was isolated from soil sample of a reed pond in Shangqiu, Henan province, P. R. China. The strain named THG-SQE6T grows well at 25-42 oC, pH 6.5-7.5 and in the presence of 0-1 % (w/v) NaCl. The phylogenetic analysis based on 16S rRNA gene sequence showed that the strain THG-SQE6T was most closely related to Aquaspirillum serpens IAM 13944T (97...
January 19, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109203/pedobacter-lusitanus-sp-nov-a-new-bacterial-species-isolated-from-sludge-of-a-deactivated-uranium-mine-in-portugal
#7
Cláudia Covas, Tânia Caetano, Andreia Cruz, Tiago Santos, Liliana Dias, Guenter Klein, Amir Abdulmawjood, Luiz Rodríguez-Alcalá, Lígia Pimentel, Ana Gomes, Ana Cristina Freitas, Alba Garcia-Serrano, Javier Fontecha, Sónia Mendo
Strain NL19T is a Gram negative aerobic bacterium that was isolated from sludge of a deactivated uranium mine in Portugal. 16S rRNA gene sequence analysis revealed that strain NL19T is a member of the genus Pedobacter and closely related to the strains Pedobacter himalayensis MTCC 6384T, Pedobacter cryoconitis DSM 14825T, Pedobacter westerhofensis DSM 19036T and P. hartonius DSM 19033T. It has a DNA G+C content of 40.8 mol%, which agreed with the genus description. The main fatty acids include C16:1 9c, C14:1 9c, C4:0, Iso-C17:0, Iso-C17:0 3-OH, C16:0, Anteiso-C15:0 and Iso-C15:0 3-OH...
January 21, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109202/algoriphagus-resistens-sp-nov-isolated-from-marine-sediment
#8
Ji-Ru Han, Jin-Xin Zhao, Zong-Jie Wang, Guan-Jun Chen, Zong-Jun Du
Strain NH1T, a pink-pigmented, facultatively anaerobic, heterotrophic, catalase-positive and oxidase-negative, Gram-stain-negative marine bacterium, was isolated from marine sediment in the coast of Weihai, China. Cells of strain NH1T was rod-shaped, 0.8-2.0 µm in length and 0.5 µm in width. The strain able to grow at 13-37 °C, pH 5.5-8.5, in the presence of 0.0-8.0% (w/v) NaCl. Optimal growth was observed at 28 °C, with 3.0% (w/v) NaCl and pH 6.5-7.0. Nitrate was reduced. The G+C content of the DNA was 41...
January 19, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109200/arcobacter-lekithochrous-sp-nov-a-new-species-isolated-from-a-molluscan-hatchery-in-norway
#9
Ana L Diéguez, Sabela Balboa, Thorolf Magnesen, Jesús L Romalde
Four bacterial strains, LFT 1.7T, LT2C 2.5, LT4C 2.8 and TM 4.6, were isolated from Great scallop (Pecten maximus) larvae and tank seawater in a Norwegian hatchery and characterized by a polyphasic approach including phenotypic, chemotaxonomic and genomic traits. All of them were Gram-negative and motile rods, oxidase and catalase positive and required sea salts for growth. Major fatty acids present were Summed Feature 3 (C16:1ω7c/C16:1 ω6c), Summed Feature 8 (C18:1ω7c or C18:1 ω6c), C16:0, C14:0, Summed Feature 2 (C14:0 3OH/C16:1 iso I), C12:0 3OH and C12:0...
January 19, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109059/maintaining-stability-of-the-rumen-ecosystem-is-associated-with-changes-of-microbial-composition-and-epithelial-tlr-signaling
#10
Hong Shen, Zhan Chen, Zanming Shen, Zhongyan Lu
We used the goat as a model to study the effects of rumen microbial composition and epithelial TLR signaling on maintaining rumen stability during exogenous butyrate interference. Six cannulated goats received a rapid intraruminal infusion of 0.1 mol/L potassium phosphate buffer with (BT, n = 3) or without (CO, n = 3) 0.3 g/kg·BW·day sodium butyrate for 28 days. The ruminal pH and the concentration of total SCFA were not affected by the interference. 16S rRNA gene amplicon sequencing revealed a change in microbial composition after the butyrate infusion...
January 21, 2017: MicrobiologyOpen
https://www.readbyqxmd.com/read/28107528/nasopharyngeal-microbiome-diversity-changes-over-time-in-children-with-asthma
#11
Marcos Pérez-Losada, Lamia Alamri, Keith A Crandall, Robert J Freishtat
BACKGROUND: The nasopharynx is a reservoir for pathogens associated with respiratory illnesses such as asthma. Next-generation sequencing (NGS) has been used to characterize the nasopharyngeal microbiome of infants and adults during health and disease; less is known, however, about the composition and temporal dynamics (i.e., longitudinal variation) of microbiotas from children and adolescents. Here we use NGS technology to characterize the nasopharyngeal microbiomes of asthmatic children and adolescents (6 to 18 years) and determine their stability over time...
2017: PloS One
https://www.readbyqxmd.com/read/28105509/variation-in-metabolite-profiles-of-amphibian-skin-bacterial-communities-across-elevations-in-the-neotropics
#12
Daniel Medina, Myra C Hughey, Matthew H Becker, Jenifer B Walke, Thomas P Umile, Elizabeth A Burzynski, Anthony Iannetta, Kevin P C Minbiole, Lisa K Belden
Both the structure and function of host-associated microbial communities are potentially impacted by environmental conditions, just as the outcomes of many free-living species interactions are context-dependent. Many amphibian populations have declined around the globe due to the fungal skin pathogen, Batrachochytrium dendrobatidis (Bd), but enivronmental conditions may influence disease dynamics. For instance, in Panamá, the most severe Bd outbreaks have occurred at high elevation sites. Some amphibian species harbor bacterial skin communities that can inhibit the growth of Bd, and therefore, there is interest in understanding whether environmental context could also alter these host-associated microbial communities in a way that might ultimately impact Bd dynamics...
January 19, 2017: Microbial Ecology
https://www.readbyqxmd.com/read/28105505/frankia-discariae-sp-nov-an-infective-and-effective-microsymbiont-isolated-from-the-root-nodule-of-discaria-trinervis
#13
Imen Nouioui, Maria Del Carmen Montero-Calasanz, Faten Ghodhbane-Gtari, Manfred Rohde, Louis S Tisa, Hans-Peter Klenk, Maher Gtari
Strain BCU110501(T) was the first isolate reported to fulfill Koch's postulates by inducing effective nodules on its host plant of origin Discaria trinervis (Rhalmnaceae). Based on 16S rRNA gene sequence similarities, the strain was found to be most closely related to the type strain of Frankia elaeagni DSM 46783(T) (98.6%) followed by F. alni DSM 45986(T) (98.2%), F. casuarinae DSM 45818(T) (97.8%) and F. inefficacies DSM 45817(T) (97.8%). Digital DNA:DNA hybridizations (dDDH) between strain BCU110501(T)and the type strains of other Frankia species were clearly below the cutoff point of 70%...
January 19, 2017: Archives of Microbiology
https://www.readbyqxmd.com/read/28104666/inter-laboratory-quantification-of-bacteria-and-archaea-in-deeply-buried-sediments-of-the-baltic-sea-iodp-expedition-347
#14
Joy Buongiorno, Stephanie Turner, Gordon Webster, Masanori Asai, Alexander K Shumaker, Taylor Roy, Andrew Weightman, Axel Schippers, Karen G Lloyd
Two common quantification methods for subseafloor microorganisms are catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH) and quantitative PCR (qPCR). Using these methods, we quantified Bacteria and Archaea in Baltic Sea basin sediments (IODP Exp. 347) down to 90 mbsf, testing the following hypotheses in an inter-laboratory comparison: 1) proteinase K permeabilization of Archaeal cell walls increases CARD-FISH accuracy, and 2) qPCR varies by more than an order of magnitude between laboratories using similar protocols...
January 18, 2017: FEMS Microbiology Ecology
https://www.readbyqxmd.com/read/28104504/diversity-of-new-delhi-metallo-beta-lactamase-producing-bacteria-in-china
#15
Xiaofeng Hu, Xuebing Xu, Xu Wang, Wencheng Xue, Haijian Zhou, Ling Zhang, Qiuxia Ma, Rongtao Zhao, Guozheng Li, Peng Li, Chuanfu Zhang, Yun Shi, Jian Wang, Leili Jia, Rongzhang Hao, Ligui Wang, Dayang Zou, Xuelin Liu, Shaofu Qiu, Hongbin Song, Yansong Sun
OBJECTIVES: The prevalence and dissemination of diverse NDM-producing bacteria in China was investigated. METHODS: We collected 1,162 isolates from 8 cities during December 2013∼May 2015 in China. The NDM-positive strains as well as the NDM genotypes in these sample were detected via Vitek 2 compact system (bioMérieux, France), 16S rRNA gene sequencing, PCR and an S1- pulsed-field gel electrophoresis assay and Southern blot hybridization. The horizontal-transfer capability of the blaNDM gene was assessed by filter mating by using a standard E...
January 16, 2017: International Journal of Infectious Diseases: IJID
https://www.readbyqxmd.com/read/28103952/the-interaction-between-vaginal-microbiota-cervical-length-and-vaginal-progesterone-treatment-for-preterm-birth-risk
#16
Lindsay M Kindinger, Phillip R Bennett, Yun S Lee, Julian R Marchesi, Ann Smith, Stefano Cacciatore, Elaine Holmes, Jeremy K Nicholson, T G Teoh, David A MacIntyre
BACKGROUND: Preterm birth is the primary cause of infant death worldwide. A short cervix in the second trimester of pregnancy is a risk factor for preterm birth. In specific patient cohorts, vaginal progesterone reduces this risk. Using 16S rRNA gene sequencing, we undertook a prospective study in women at risk of preterm birth (n = 161) to assess (1) the relationship between vaginal microbiota and cervical length in the second trimester and preterm birth risk and (2) the impact of vaginal progesterone on vaginal bacterial communities in women with a short cervix...
January 19, 2017: Microbiome
https://www.readbyqxmd.com/read/28103920/ovarian-cycling-and-reproductive-state-shape-the-vaginal-microbiota-in-wild-baboons
#17
Elizabeth A Miller, Joshua A Livermore, Susan C Alberts, Jenny Tung, Elizabeth A Archie
BACKGROUND: The vaginal microbiome is an important site of bacterial-mammalian symbiosis. This symbiosis is currently best characterized for humans, where lactobacilli dominate the microbial community and may help defend women against infectious disease. However, lactobacilli do not dominate the vaginal microbiota of any other mammal studied to date, raising key questions about the forces that shape the vaginal microbiome in non-human mammals. RESULTS: We used Illumina sequencing of the bacterial 16S rRNA gene to investigate variation in the taxonomic composition of the vaginal microbiota in 48 baboons (Papio cynocephalus), members of a well-studied wild population in Kenya...
January 19, 2017: Microbiome
https://www.readbyqxmd.com/read/28103917/a-fast-and-robust-protocol-for-metataxonomic-analysis-using-rnaseq-data
#18
Jeremy W Cox, Richard A Ballweg, Diana H Taft, Prakash Velayutham, David B Haslam, Aleksey Porollo
BACKGROUND: Metagenomics is a rapidly emerging field aimed to analyze microbial diversity and dynamics by studying the genomic content of the microbiota. Metataxonomics tools analyze high-throughput sequencing data, primarily from 16S rRNA gene sequencing and DNAseq, to identify microorganisms and viruses within a complex mixture. With the growing demand for analysis of the functional microbiome, metatranscriptome studies attract more interest. To make metatranscriptomic data sufficient for metataxonomics, new analytical workflows are needed to deal with sparse and taxonomically less informative sequencing data...
January 19, 2017: Microbiome
https://www.readbyqxmd.com/read/28103814/the-respiratory-microbiome-in-bronchial-mucosa-and-secretions-from-severe-ige-mediated-asthma-patients
#19
Laura Millares, Guadalupe Bermudo, Vicente Pérez-Brocal, Christian Domingo, Marian Garcia-Nuñez, Xavier Pomares, Andrés Moya, Eduard Monsó
BACKGROUND: The bronchial microbiome in chronic lung diseases presents an abnormal pattern, but its microbial composition and regional differences in severe asthma have not been sufficiently addressed. The aim of the study was to describe the bacterial community in bronchial mucosa and secretions of patients with severe chronic asthma chronically treated with corticosteroids in addition to usual care according to Global Initiative for Asthma. Bacterial community composition was obtained by 16S rRNA gene amplification and sequencing, and functional capabilities through PICRUSt...
January 19, 2017: BMC Microbiology
https://www.readbyqxmd.com/read/28103291/the-gut-brain-axis-in-healthy-females-lack-of-significant-association-between-microbial-composition-and-diversity-with-psychiatric-measures
#20
Susan C Kleiman, Emily C Bulik-Sullivan, Elaine M Glenny, Stephanie C Zerwas, Eun Young Huh, Matthew C B Tsilimigras, Anthony A Fodor, Cynthia M Bulik, Ian M Carroll
OBJECTIVE: This study examined associations between the composition and diversity of the intestinal microbiota and measures of depression, anxiety, eating disorder psychopathology, stress, and personality in a group of healthy adult females. METHODS: Female participants (n = 91) ages 19-50 years with BMI 18.5-25 kg/m2 were recruited from central North Carolina between July 2014 and March 2015. Participants provided a single fecal sample and completed an online psychiatric questionnaire that included five measures: (i) Beck Anxiety Inventory; (ii) Beck Depression Inventory-II; (iii) Eating Disorder Examination-Questionnaire; (iv) Perceived Stress Scale; and (v) Mini International Personality Item Pool...
2017: PloS One
keyword
keyword
77342
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"