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Lipase lid

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https://www.readbyqxmd.com/read/27908755/synthesis-evaluation-and-molecular-modelling-studies-of-2-carbazol-3-yl-2-oxoacetamide-analogues-as-a-new-class-of-potential-pancreatic-lipase-inhibitors
#1
S N C Sridhar, George Ginson, P O Venkataramana Reddy, Mukund P Tantak, Dalip Kumar, Atish T Paul
A series of twenty four 2-(carbazol-3-yl)-2-oxoacetamide analogues were synthesized, characterized and evaluated for their pancreatic lipase (PL) inhibitory activity. Porcine PL was used against 4-nitrophenyl butyrate (method A) and tributyrin (methods B and C) as substrates during the PL inhibition assay. Compounds 7e, 7f and 7p exhibited potential PL inhibitory activity (IC50 values of 6.31, 8.72 and 9.58μM, respectively in method A; and Xi50 of 21.85, 21.94 and 26.2, respectively in method B). Further, inhibition kinetics of 7e, 7f and 7p against PL, using method A, revealed their competitive nature of inhibition...
November 18, 2016: Bioorganic & Medicinal Chemistry
https://www.readbyqxmd.com/read/27885194/isolation-and-characterization-of-a-thermostable-lipase-from-bacillus-thermoamylovorans-nb501
#2
Chihaya Yamada, Kota Sawano, Noriyasu Iwase, Masaki Matsuoka, Takatoshi Arakawa, Shigeo Nishida, Shinya Fushinobu
Two thermophilic bacterial strains, Bacillus thermoamylovorans NB501 and NB502, were isolated from a high-temperature aerobic fermentation reactor system that processes tofu refuse (okara) in the presence of used soybean oil. We cloned a lipase gene from strain NB501, which secretes a thermophilic lipase. The biochemical characteristics of the recombinant enzyme (Lip501r) were elucidated. Lip501r is monomeric in solution with an apparent molecular mass of 38 kDa on SDS-PAGE. The optimal pH and apparent optimal temperature of Lip501r were 8 and 60°C, respectively...
November 22, 2016: Journal of General and Applied Microbiology
https://www.readbyqxmd.com/read/27871377/enhancement-of-methanol-resistance-of-yarrowia-lipolytica-lipase-2-using-%C3%AE-cyclodextrin-as-an-additive-insights-from-experiments-and-molecular-dynamics-simulation
#3
Hao Cao, Yang Jiang, Haiyang Zhang, Kaili Nie, Ming Lei, Li Deng, Fang Wang, Tianwei Tan
The methanol resistance of lipase is a critical parameter in enzymatic biodiesel production. In the present work, the methanol resistance of Yarrowia lipolytica Lipase 2 (YLLIP2) was significantly improved using β-cyclodextrin (β-CD) as an additive. According to the results, YLLIP2 with β-CD exhibited approximately 7000U/mg specific activity in 30wt% methanol for 60min compared with no activity without β-CD under the same conditions. Molecular dynamics (MD) simulation results indicated that the β-CD molecules weakened the conformational change of YLLIP2 and maintained a semi-open state of the lid by overcoming the interference caused by methanol molecules...
January 2017: Enzyme and Microbial Technology
https://www.readbyqxmd.com/read/27821336/a-comparative-study-on-kinetics-and-substrate-specificities-of-phospholipase-a1-with-thermomyces-lanuginosus-lipase
#4
Ruipu Xin, Faez Iqbal Khan, Zexin Zhao, Zedong Zhang, Bo Yang, Yonghua Wang
The mechanism of lipase binding to the lipid-water interface is crucial for substrate specificity and kinetic properties. In this study, the chain-length specificity, regiospecificity and substrate specificity of Phospholipase A1 (PLA1) and its parent enzyme Thermomyces lanuginosus lipase (TLL) have been investigated using a classical emulsion system. The results show that both PLA1 and TLL are 1,3-regioselective lipases. Additionally, the hydrolytic activity of PLA1 is comparatively lower on short-chain triacylglyceride (TAG) and higher on phosphatidylcholine (PC) than the hydrolytic activity of TLL...
February 15, 2017: Journal of Colloid and Interface Science
https://www.readbyqxmd.com/read/27779408/molecular-mechanism-behind-solvent-concentration-dependent-optimal-activity-of-thermomyces-lanuginosus-lipase-in-biocompatible-ionic-liquid-interfacial-activation-through-arginine-switch
#5
Sudip Das, Tarak Karmakar, Sundaram Balasubramanian
Thermomyces lanuginosus lipase (TLL) is an industrially significant catalyst for the production of biodiesel due to its operability over a wide range of pH and temperature. Molecular dynamics simulations of TLL in aqueous solutions of a biocompatible ionic liquid (IL), cholinium glycinate (ChGly) have been carried out to investigate the microscopic reasons for the experimentally observed enhancement in the activity of TLL, upon addition of room temperature IL, especially at an optimal concentration. Eight different TLL systems in both its open and closed forms at various concentrations of the room temperature IL in water have been studied...
October 25, 2016: Journal of Physical Chemistry. B
https://www.readbyqxmd.com/read/27693248/controlled-lid-opening-in-thermomyces-lanuginosus-lipase-an-engineered-switch-for-studying-lipase-function
#6
Jakob Skjold-Jørgensen, Jesper Vind, Olga V Moroz, Elena Blagova, Vikram K Bhatia, Allan Svendsen, Keith S Wilson, Morten J Bjerrum
Here, we present a lipase mutant containing a biochemical switch allowing a controlled opening and closing of the lid independent of the environment. The closed form of the TlL mutant shows low binding to hydrophobic surfaces compared to the binding observed after activating the controlled switch inducing lid-opening. We directly show that lipid binding of this mutant is connected to an open lid conformation demonstrating the impact of the exposed amino acid residues and their participation in binding at the water-lipid interface...
September 28, 2016: Biochimica et Biophysica Acta
https://www.readbyqxmd.com/read/27529468/deciphering-the-toxicity-of-bisphenol-a-to-candida-rugosa-lipase-through-spectrophotometric-methods
#7
Rui Zhang, Lining Zhao, Rutao Liu
Bisphenol A is widely used in the manufacture of food packaging and beverage containers and can invade our food and cause contamination. Candida rugose lipase has been a versatile enzyme for biocatalysis and biotransformations to produce useful materials for food, pharmaceutical and flavor. The interactions between bisphenol A and Candida rugosa lipase in vitro were studied by UV-vis, steady-state fluorescence, circular dichroism, synchronous fluorescence, light scattering spectra, molecular docking and enzyme activity assay to better understand the toxicity and toxic mechanisms of bisphenol A...
October 2016: Journal of Photochemistry and Photobiology. B, Biology
https://www.readbyqxmd.com/read/27499063/free-energy-studies-reveal-a-possible-mechanism-for-oxidation-dependent-inhibition-of-mgl
#8
Laura Scalvini, Federica Vacondio, Michele Bassi, Daniele Pala, Alessio Lodola, Silvia Rivara, Kwang-Mook Jung, Daniele Piomelli, Marco Mor
The function of monoacylglycerol lipase (MGL), a key actor in the hydrolytic deactivation of the endocannabinoid 2-arachidonoyl-sn-glycerol (2AG), is tightly controlled by the cell's redox state: oxidative signals such as hydrogen peroxide suppress MGL activity in a reversible manner through sulfenylation of the peroxidatic cysteines, C201 and C208. Here, using as a starting point the crystal structures of human MGL (hMGL), we present evidence from molecular dynamics and metadynamics simulations along with high-resolution mass spectrometry studies indicating that sulfenylation of C201 and C208 alters the conformational equilibrium of the membrane-associated lid domain of MGL to favour closed conformations of the enzyme that do not permit the entry of substrate into the active site...
2016: Scientific Reports
https://www.readbyqxmd.com/read/27474867/toluene-promotes-lid-2-interfacial-activation-of-cold-active-solvent-tolerant-lipase-from-pseudomonas-fluorescens-strain-ams8
#9
Norhayati Yaacob, Mohd Shukuri Mohamad Ali, Abu Bakar Salleh, Raja Noor Zaliha Raja Abdul Rahman, Adam Thean Chor Leow
The utilization of cold active lipases in organic solvents proves an excellent approach for chiral synthesis and modification of fats and oil due to the inherent flexibility of lipases under low water conditions. In order to verify whether this lipase can function as a valuable synthetic catalyst, the mechanism concerning activation of the lid and interacting solvent residues in the presence of organic solvent must be well understood. A new alkaline cold-adapted lipase, AMS8, from Pseudomonas fluorescens was studied for its structural adaptation and flexibility prior to its exposure to non-polar, polar aprotic and protic solvents...
July 2016: Journal of Molecular Graphics & Modelling
https://www.readbyqxmd.com/read/27419053/lid-mobility-in-lipase-smg1-validated-using-a-thiol-disulfide-redox-potential-probe
#10
Shaohua Guo, Grzegorz Maria Popowicz, Daoming Li, Dongjuan Yuan, Yonghua Wang
Most lipases possess a lid domain above the catalytic site that is responsible for their activation. Lipase SMG1 from Malassezia globose CBS 7966 (Malassezia globosa LIP1), is a mono- and diacylglycerol lipase with an atypical loop-like lid domain. Activation of SMG1 was proposed to be solely through a gating mechanism involving two residues (F278 and N102). However, through disulfide bond cross-linking of the lid, this study shows that full activation also requires mobility of the lid domain, contrary to a previous proposal...
May 2016: FEBS Open Bio
https://www.readbyqxmd.com/read/27155582/lid-closure-dynamics-of-porcine-pancreatic-lipase-in-aqueous-solution
#11
Neshatul Haque, N Prakash Prabhu
BACKGROUND: Pancreatic lipases hydrolyze fatty acids in dietary pathway. The activity of porcine pancreatic lipase (PPL) is controlled by lid domain along with a coenzyme, colipase. The active open-state conformation of the protein could be induced by detergents or bile salts which would be further stabilized by binding of colipase. In the absence of these interactions, the lid preferably attains a closed conformation in water. METHODS: Molecular dynamic simulation was used to monitor the lid movement of PPL in open and closed conformations in water...
October 2016: Biochimica et Biophysica Acta
https://www.readbyqxmd.com/read/27155580/lid-dynamics-of-porcine-pancreatic-lipase-in-non-aqueous-solvents
#12
Neshatul Haque, N Prakash Prabhu
BACKGROUND: Understanding the dynamics of enzymes in organic solvents has wider implications on their industrial applications. Pancreatic lipases, which show activity in their lid open-state, demonstrate enhanced activity in organic solvents at higher temperatures. However, the lid dynamics of pancreatic lipases in non-aqueous environment is yet to be clearly understood. METHODS: Dynamics of porcine pancreatic lipase (PPL) in open and closed conformations was followed in ethanol, toluene, and octanol using molecular simulation methods...
October 2016: Biochimica et Biophysica Acta
https://www.readbyqxmd.com/read/27012424/structural-basis-of-lipid-targeting-and-destruction-by-the-type-v-secretion-system-of-pseudomonas-aeruginosa
#13
Paulo Vinicius da Mata Madeira, Samira Zouhir, Pauline Basso, David Neves, Aurélie Laubier, Richard Salacha, Sophie Bleves, Eric Faudry, Carlos Contreras-Martel, Andréa Dessen
The type V secretion system is a macromolecular machine employed by a number of bacteria to secrete virulence factors into the environment. The human pathogen Pseudomonas aeruginosa employs the newly described type Vd secretion system to secrete a soluble variant of PlpD, a lipase of the patatin-like family synthesized as a single macromolecule that also carries a polypeptide transport-associated domain and a 16-stranded β-barrel. Here we report the crystal structure of the secreted form of PlpD in its biologically active state...
May 8, 2016: Journal of Molecular Biology
https://www.readbyqxmd.com/read/26934700/analysis-of-comparative-sequence-and-genomic-data-to-verify-phylogenetic-relationship-and-explore-a-new-subfamily-of-bacterial-lipases
#14
Malihe Masomian, Raja Noor Zaliha Raja Abd Rahman, Abu Bakar Salleh, Mahiran Basri
Thermostable and organic solvent-tolerant enzymes have significant potential in a wide range of synthetic reactions in industry due to their inherent stability at high temperatures and their ability to endure harsh organic solvents. In this study, a novel gene encoding a true lipase was isolated by construction of a genomic DNA library of thermophilic Aneurinibacillus thermoaerophilus strain HZ into Escherichia coli plasmid vector. Sequence analysis revealed that HZ lipase had 62% identity to putative lipase from Bacillus pseudomycoides...
2016: PloS One
https://www.readbyqxmd.com/read/26930469/selective-disruption-of-disulphide-bonds-lowered-activation-energy-and-improved-catalytic-efficiency-in-talipb-from-trichosporon-asahii-msr54-md-simulations-revealed-flexible-lid-and-extended-substrate-binding-area-in-the-mutant
#15
Yogesh Singh, Namita Gupta, Ved Vrat Verma, Manisha Goel, Rani Gupta
TALipB (33 kDa) is a solvent stable, enantioselective lipase from Trichosporon asahii MSR54. It is cysteine-rich and shows activation in presence of thiol reducing agents. DIANNA server predicted three disulphide bridges C53-C195 (S1), C89-C228 (S2) and C164-C254 (S3) in the enzyme. Selective disruption of disulphide bonds by cysteine to alanine mutations at Cys53 and Cys89 of S1 and S2 bonds resulted in enzyme activation. Mutant mTALipB (S1+S2) showed increase in specific activity by ∼4-fold (834 mM/mg) and improved Vmax of 6...
March 25, 2016: Biochemical and Biophysical Research Communications
https://www.readbyqxmd.com/read/26908254/structural-characterization-of-angptl8-betatrophin-with-its-interacting-partner-lipoprotein-lipase
#16
Amnah Siddiqa, Jamil Ahmad, Amjad Ali, Rehan Zafar Paracha, Zurah Bibi, Babar Aslam
Angiopoietin-like protein 8 (ANGPTL8) (also known as betatrophin) is a newly identified secretory protein with a potential role in autophagy, lipid metabolism and pancreatic beta-cell proliferation. Its structural characterization is required to enhance our current understanding of its mechanism of action which could help in identifying its receptor and/or other binding partners. Based on the physiological significance and necessity of exploring structural features of ANGPTL8, the present study is conducted with a specific aim to model the structure of ANGPTL8 and study its possible interactions with Lipoprotein Lipase (LPL)...
April 2016: Computational Biology and Chemistry
https://www.readbyqxmd.com/read/26782782/characterization-of-a-cold-active-and-salt-tolerant-esterase-identified-by-functional-screening-of-arctic-metagenomic-libraries
#17
Concetta De Santi, Bjørn Altermark, Marcin Miroslaw Pierechod, Luca Ambrosino, Donatella de Pascale, Nils-Peder Willassen
BACKGROUND: The use of metagenomics in enzyme discovery constitutes a powerful approach to access to genomes of unculturable community of microorganisms and isolate novel valuable biocatalysts for use in a wide range of biotechnological and pharmaceutical fields. RESULTS: Here we present a novel esterase gene (lip3) identified by functional screening of three fosmid metagenomic libraries, constructed from three marine sediment samples. The sequenced positive fosmid revealed an enzyme of 281 amino acids with similarity to class 3 lipases...
January 19, 2016: BMC Biochemistry
https://www.readbyqxmd.com/read/26716135/crystal-and-molecular-structure-of-hexagonal-form-of-lipase-b-from-candida-antarctica
#18
Paweł Strzelczyk, Grzegorz D Bujacz, Piotr Kiełbasiński, Jarosław Błaszczyk
During crystallization screenings of commercially available hydrolytic enzymes, the new, hexagonal crystal form of CAL-B, has been discovered and hereby reported. The NAG molecules, which were closing the glycosylation site in the orthorhombic form, in hexagonal structure make the glycosylation site open. It is unknown whether the opening and closing of the glycosylation site by the 'lid' NAG molecules, could be related to the opening and closing of the active center of the enzyme upon substrate binding and product release...
2016: Acta Biochimica Polonica
https://www.readbyqxmd.com/read/26645098/lipases-that-activate-at-high-solvent-polarities
#19
Jakob Skjold-Jørgensen, Jesper Vind, Allan Svendsen, Morten J Bjerrum
Thermomyces lanuginosus lipase (TlL) and related lipases become activated in low-polarity environments that exist at the water-lipid interface where a structural change of the "lid" region occurs. In this work, we have investigated the activation of TlL (Lipase_W89) and certain lid mutants, containing either a single positive charge mutation, E87K (Lipase_K87_W89), within the lid region or a lid residue composition of both lipase and esterase character (Hybrid_W89) as a function of solvent polarity. Activation differences between the variants and TlL were studied by a combination of biophysical and theoretical methods...
January 12, 2016: Biochemistry
https://www.readbyqxmd.com/read/26603193/crystal-structure-of-vespid-phospholipase-a-1-reveals-insights-into-the-mechanism-for-cause-of-membrane-dysfunction
#20
Ming-Hon Hou, Chien-Ying Chuang, Tzu-Ping Ko, Nien-Jen Hu, Chia-Cheng Chou, Yan-Ping Shih, Chewn-Lang Ho, Andrew H-J Wang
Vespid phospholipase A1 (vPLA1) from the black-bellied hornet (Vespa basalis) catalyzes the hydrolysis of emulsified phospholipids and shows potent hemolytic activity that is responsible for its lethal effect. To investigate the mechanism of vPLA1 towards its function such as hemolysis and emulsification, we isolated vPLA1 from V. basalis venom and determined its crystal structure at 2.5 Å resolution. vPLA1 belongs to the α/β hydrolase fold family. It contains a tightly packed β-sheet surrounded by ten α-helices and a Gly-X-Ser-X-Gly motif, characteristic of a serine hydrolyase active site...
January 2016: Insect Biochemistry and Molecular Biology
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