keyword
MENU ▼
Read by QxMD icon Read
search

Deconvolution

keyword
https://www.readbyqxmd.com/read/29151224/the-potential-role-of-the-osteopontin-osteocalcin-osteoprotegerin-triad-in-the-pathogenesis-of-prediabetes-in-humans
#1
Giuseppe Daniele, Deidre Winnier, Andrea Mari, Jan Bruder, Marcel Fourcaudot, Zuo Pengou, Andrea Hansis-Diarte, Christopher Jenkinson, Devjit Tripathy, Franco Folli
AIMS: To examine the relationship between hormones involved in bone remodeling and glucose metabolism alterations in prediabetes. METHODS: Individuals (n = 43) with NGT (BMI = 31.1 ± 1.1 kg/m(2)) and individuals (n = 79) with impaired glucose regulation (IGR) (BMI = 31.9 ± 1.2 kg/m(2)) including subjects with IFG, IGT, and IFG-IGT underwent OGTT and DXA. Osteopontin (OPN), osteocalcin (OCN), osteoprotegerin (OPG), and PTH levels were measured at fasting...
November 18, 2017: Acta Diabetologica
https://www.readbyqxmd.com/read/29150526/the-devil-is-in-the-domain-understanding-protein-recognition-of-multiple-rna-targets
#2
REVIEW
Glen R Gronland, Andres Ramos
RNA regulation provides a finely tuned and highly co-ordinated control of gene expression. Regulation is mediated by hundreds to thousands of multi-functional RNA-binding proteins which often interact with large sets of RNAs. In this brief review, we focus on a recent work that highlights how the proteins use multiple RNA-binding domains to interact selectively with the different RNA targets. Deconvoluting the molecular complexity of the RNA regulatory network is essential to understanding cell differentiation and function, and requires accurate models for protein-RNA recognition and protein target selectivity...
November 17, 2017: Biochemical Society Transactions
https://www.readbyqxmd.com/read/29149517/resolving-a-reactive-organometallic-intermediate-from-dynamic-directing-group-systems-by-selective-c-h-activation
#3
Fredrik Schaufelberger, Brian J J Timmer, Olof Ramström
Catalyst discovery from systems of potential precursors is a challenging endeavor. Herein, a new strategy applying dynamic chemistry to the identification of catalyst precursors from C-H activation of imines is proposed and evaluated. Using hydroacylation of imines as a model reaction, the selection of an organometallic reactive intermediate from a dynamic imine system, involving many potential directing group/metal entities, is demonstrated. The identity of the amplified reaction intermediate with the best directing group could be resolved in situ via ESI-MS, and coupling of the procedure to an iterative deconvolution protocol generated a system with high screening efficiency...
November 17, 2017: Chemistry: a European Journal
https://www.readbyqxmd.com/read/29144161/use-of-patient-outcome-endpoints-to-identify-the-best-functional-ct-imaging-parameters-in-metastatic-renal-cell-carcinoma-patients
#4
Jill Rachel Mains, Frede Donskov, Erik Morre Petersen, Hans Henrik Torp Madsen, Jesper Thygesen, Kennet Thorup, Finn Rasmussen
OBJECTIVE: To use the patient outcome endpoints overall survival and progression-free survival to evaluate functional parameters derived from dynamic contrast-enhanced computed tomography (DCE-CT). METHODS: 69 patients with metastatic renal cell carcinoma (mRCC) had DCE-CT scans at baseline and after 5 and 10 weeks of treatment. Blood volume, blood flow and standardized perfusion values were calculated using deconvolution (BVdeconv, BFdeconv and SPVdeconv), blood flow and standardized perfusion values using maximum slope (BFmax and SPVmax), and blood volume and permeability surface area product using the Patlak model (BVpatlak and PS)...
November 16, 2017: British Journal of Radiology
https://www.readbyqxmd.com/read/29143429/an-overview-of-methods-to-mitigate-artifacts-in-optical-coherence-tomography-imaging-of-the-skin
#5
Saba Adabi, Audrey Fotouhi, Qiuyun Xu, Steve Daveluy, Darius Mehregan, Adrian Podoleanu, Mohammadreza Nasiriavanaki
BACKGROUND: Optical coherence tomography (OCT) of skin delivers three-dimensional images of tissue microstructures. Although OCT imaging offers a promising high-resolution modality, OCT images suffer from some artifacts that lead to misinterpretation of tissue structures. Therefore, an overview of methods to mitigate artifacts in OCT imaging of the skin is of paramount importance. Speckle, intensity decay, and blurring are three major artifacts in OCT images. Speckle is due to the low coherent light source used in the configuration of OCT...
November 16, 2017: Skin Research and Technology
https://www.readbyqxmd.com/read/29136815/quantitative-study-of-zinc-and-metallothioneins-in-the-human-retina-and-rpe-cells-by-mass-spectrometry-based-methodologies
#6
Sara Rodríguez-Menéndez, Beatriz Fernández, Montserrat García, Lydia Álvarez, Maria Luisa Fernández, Alfredo Sanz-Medel, Miguel Coca-Prados, Rosario Pereiro, Héctor González-Iglesias
The retina contains the highest concentration of zinc in the human eye and it is primarily associated with the retinal pigment epithelium (RPE). Metallothioneins (MTs) are the main cytosolic zinc-ion-binding proteins, exerting a tight control in the number of atoms of Zn-bound to the MTs related with their antioxidant and neuroprotective functions. In order to study the Zn-MT system in retina and RPE, we have implemented mass spectrometry (MS)-based technologies: two complementary element detection methodologies (HPLC- and laser ablation (LA)-ICP-MS) have been successfully employed to study metal content in the human eye as well as to perform speciation studies of Zn-MTs...
February 1, 2018: Talanta
https://www.readbyqxmd.com/read/29131928/n-and-o-isotope-%C3%AE-15-n-%C3%AE-%C3%AE-15-n-%C3%AE-%C3%AE-18-o-%C3%AE-17-o-analyses-of-dissolved-no3-and-no2-by-the-cd-azide-reduction-method-and-n2-o-laser-spectrometry
#7
Leonard I Wassenaar, Cedric Douence, Mark Altabet, Pradeep Aggarwal
RATIONALE: The nitrogen and oxygen (δ(15) N, δ(18) O, δ(17) O) isotopic compositions of NO3(-) and NO2(-) are important tracers of nutrient dynamics in soil, rain, groundwater and the oceans. The Cd-azide method was used to convert NO3 or NO2 to N2 O for N and triple-O isotopic analyses by N2 O-laser spectrometry. A protocol for laser-based headspace isotope analyses was compared with isotope-ratio mass spectrometry. Lasers provide the ability to directly measure (17) O anomalies which can help discern atmospheric N sources...
November 13, 2017: Rapid Communications in Mass Spectrometry: RCM
https://www.readbyqxmd.com/read/29130684/influence-of-proton-acceptors-on-the-proton-coupled-electron-transfer-reaction-kinetics-of-a-ruthenium-tyrosine-complex
#8
J Christian Lennox, Jillian L Dempsey
A polypyridyl ruthenium complex with fluorinated bipyridine ligands and a covalently bound tyrosine moiety was synthesized, and its photo-induced proton-coupled electron transfer (PCET) reactivity in acetonitrile was investigated with transient absorption spectroscopy. Using flash-quench methodology with methyl viologen as an oxidative quencher, a Ru(3+) species is generated that is capable of initiating the intramolecular PCET oxidation of the tyrosine moiety. Using a series of substituted pyridine bases, the reaction kinetics were found to vary as a function of proton acceptor concentration and identity, with no significant H/D kinetic isotope effect...
November 13, 2017: Journal of Physical Chemistry. B
https://www.readbyqxmd.com/read/29129912/reflective-imaging-improves-spatiotemporal-resolution-and-collection-efficiency-in-light-sheet-microscopy
#9
Yicong Wu, Abhishek Kumar, Corey Smith, Evan Ardiel, Panagiotis Chandris, Ryan Christensen, Ivan Rey-Suarez, Min Guo, Harshad D Vishwasrao, Jiji Chen, Jianyong Tang, Arpita Upadhyaya, Patrick J La Riviere, Hari Shroff
Light-sheet fluorescence microscopy (LSFM) enables high-speed, high-resolution, and gentle imaging of live specimens over extended periods. Here we describe a technique that improves the spatiotemporal resolution and collection efficiency of LSFM without modifying the underlying microscope. By imaging samples on reflective coverslips, we enable simultaneous collection of four complementary views in 250 ms, doubling speed and improving information content relative to symmetric dual-view LSFM. We also report a modified deconvolution algorithm that removes associated epifluorescence contamination and fuses all views for resolution recovery...
November 13, 2017: Nature Communications
https://www.readbyqxmd.com/read/29126144/multi-scale-mathematical-model-of-drug-induced-proximal-tubule-injury-linking-urinary-biomarkers-to-epithelial-cell-injury-and-renal-dysfunction
#10
Yeshitila Gebremichael, James Lu, Harish Shankaran, Gabriel Helmlinger, Jerome Mettetal, K Melissa Hallow
Drug-induced nephrotoxicity is a major cause of acute kidney injury (AKI), and thus detecting the potential for nephrotoxicity early in the drug development process is critical. Various urinary biomarkers exhibit different patterns following drug-induced injury that may provide greater information than traditional biomarkers like serum creatinine. In this study, we developed a multi-scale quantitative systems pharmacology model relating drug exposure to proximal tubule (PT) epithelial cell injury, and subsequently to expression of multiple urinary biomarkers and organ-level functional changes...
November 6, 2017: Toxicological Sciences: An Official Journal of the Society of Toxicology
https://www.readbyqxmd.com/read/29122609/structural-connections-support-emotional-connections-uncinate-fasciculus-microstructure-is-related-to-the-ability-to-decode-facial-emotion-expressions
#11
Bethany M Coad, Mark Postans, Carl J Hodgetts, Nils Muhlert, Kim S Graham, Andrew D Lawrence
The Uncinate Fasciculus (UF) is an association fibre tract connecting regions in the frontal and anterior temporal lobes. UF disruption is seen in several disorders associated with impaired social behaviour, but its functional role is unclear. Here we set out to test the hypothesis that the UF is important for facial expression processing, an ability fundamental to adaptive social behaviour. In two separate experiments in healthy adults, we used high-angular resolution diffusion-weighted imaging (HARDI) and constrained spherical deconvolution (CSD) tractography to virtually dissect the UF, plus a control tract (the corticospinal tract (CST)), and quantify, via tissue fractional anisotropy (FAT), individual differences in tract microstructure...
November 6, 2017: Neuropsychologia
https://www.readbyqxmd.com/read/29121662/qualitative-and-quantitative-assessment-of-illumina-s-forensic-str-and-snp-kits-on-miseq-fgx%C3%A2
#12
Vishakha Sharma, Hoi Yan Chow, Donald Siegel, Elisa Wurmbach
Massively parallel sequencing (MPS) is a powerful tool transforming DNA analysis in multiple fields ranging from medicine, to environmental science, to evolutionary biology. In forensic applications, MPS offers the ability to significantly increase the discriminatory power of human identification as well as aid in mixture deconvolution. However, before the benefits of any new technology can be employed, a thorough evaluation of its quality, consistency, sensitivity, and specificity must be rigorously evaluated in order to gain a detailed understanding of the technique including sources of error, error rates, and other restrictions/limitations...
2017: PloS One
https://www.readbyqxmd.com/read/29121466/reaching-a-vapor-sensitivity-of-0-01-parts-per-quadrillion-in-the-screening-of-large-volume-freight
#13
Daoiz Zamora, Mario Amo-Gonzalez, Marta Lanza, Gonzalo Fernandez De La Mora, Juan Fernandez de la Mora
The feasibility of detecting explosives in the atmosphere at concentrations as low as 0.01 ppq hinges on the poorly known question of what interfering species exist at these or higher concentrations. To clarify the issue, hundreds of samples of ambient air, either clean or loaded with explosives (from lightly contaminated environments) have been collected in fiberglass/stainless steel filters coated with Tenax-GR, thermally desorbed at variable temperature, and ionized with Cl- via secondary electrospray (SESI)...
November 9, 2017: Analytical Chemistry
https://www.readbyqxmd.com/read/29119999/ion-mobility-resolved-collision-induced-dissociation-and-electron-transfer-dissociation-of-n-glycopeptides-gathering-orthogonal-connectivity-information-from-a-single-mass-selected-precursor-ion-population
#14
Venkata Kolli, Katherine N Schumacher, Eric D Dodds
Glycopeptide-level mass spectrometry (MS) and tandem mass spectrometry (MS/MS) analyses are commonly performed to establish site-specific protein glycosylation profiles that are of central importance to gaining structure-function insights on glycoproteins. Confoundingly, the complete characterization of glycopeptide connectivity usually requires the acquisition of multiple MS/MS fragmentation spectra. Complementary ion fragmentation techniques such as collision-induced dissociation (CID) and electron transfer dissociation (ETD) are often applied in concert to address this need...
November 9, 2017: Analyst
https://www.readbyqxmd.com/read/29119742/super-resolution-structured-illumination-in-optically-thick-specimens-without-fluorescent-tagging
#15
Zachary R Hoffman, Charles A DiMarzio
This research extends the work of Hoffman et al. to provide both sectioning and super-resolution using random patterns within thick specimens. Two methods of processing structured illumination in reflectance have been developed without the need for a priori knowledge of either the optical system or the modulation patterns. We explore the use of two deconvolution algorithms that assume either Gaussian or sparse priors. This paper will show that while both methods accomplish their intended objective, the sparse priors method provides superior resolution and contrast against all tested targets, providing anywhere from ∼1...
November 2017: Journal of Biomedical Optics
https://www.readbyqxmd.com/read/29119175/protective-effect-of-selenium-supplementation-following-oxidative-stress-mediated-by-glucose-on-retinal-pigment-epithelium
#16
Raquel González de Vega, Montserrat García, María Luisa Fernández-Sánchez, Héctor González-Iglesias, Alfredo Sanz-Medel
There are many conditions that affect the retina. However, diabetic retinopathy (RD) as a complication of Diabetes Mellitus continues to be the leading cause of blindness in working people globally. Diabetic retinopathy is an ocular complication of diabetes that is caused by the deterioration of the blood vessels that supply the retina, which has the consequence that the vision deteriorates irreversibly. The retina, and specifically the retinal pigment epithelium (RPE) is the only neural tissue that is exposed directly and frequently to light, which favors the oxidation of lipids that become extremely toxic to the cells of the retina...
November 9, 2017: Metallomics: Integrated Biometal Science
https://www.readbyqxmd.com/read/29118333/global-mapping-of-stratigraphy-of-an-old-master-painting-using-sparsity-based-terahertz-reflectometry
#17
Junliang Dong, Alexandre Locquet, Marcello Melis, D S Citrin
The process by which art paintings are produced typically involves the successive applications of preparatory and paint layers to a canvas or other support; however, there is an absence of nondestructive modalities to provide a global mapping of the stratigraphy, information that is crucial for evaluation of its authenticity and attribution, for insights into historical or artist-specific techniques, as well as for conservation. We demonstrate sparsity-based terahertz reflectometry can be applied to extract a detailed 3D mapping of the layer structure of the 17th century easel painting Madonna in Preghiera by the workshop of Giovanni Battista Salvi da Sassoferrato, in which the structure of the canvas support, the ground, imprimatura, underpainting, pictorial, and varnish layers are identified quantitatively...
November 8, 2017: Scientific Reports
https://www.readbyqxmd.com/read/29118064/leukocyte-counts-based-on-dna-methylation-at-individual-cytosines
#18
Joana Frobel, Tanja Božić, Michael Lenz, Peter Uciechowski, Yang Han, Reinhild Herwartz, Klaus Strathmann, Susanne Isfort, Jens Panse, André Esser, Carina Birkhofer, Uwe Gerstenmaier, Thomas Kraus, Lothar Rink, Steffen Koschmieder, Wolfgang Wagner
BACKGROUND: White blood cell counts are routinely measured with automated hematology analyzers, by flow cytometry, or by manual counting. Here, we introduce an alternative approach based on DNA methylation (DNAm) at individual CG dinucleotides (CpGs). METHODS: We identified candidate CpGs that were nonmethylated in specific leukocyte subsets. DNAm levels (ranging from 0% to 100%) were analyzed by pyrosequencing and implemented into deconvolution algorithms to determine the relative composition of leukocytes...
November 8, 2017: Clinical Chemistry
https://www.readbyqxmd.com/read/29116158/optical-mapping-of-the-dominant-frequency-of-brain-signal-oscillations-in-motor-systems
#19
Feng-Mei Lu, Yi-Feng Wang, Juan Zhang, Hua-Fu Chen, Zhen Yuan
Recent neuroimaging studies revealed that the dominant frequency of neural oscillations is brain-region-specific and can vary with frequency-specific reorganization of brain networks during cognition. In this study, we examined the dominant frequency in low-frequency neural oscillations represented by oxygenated hemoglobin measurements after the hemodynamic response function (HRF) deconvolution. Twenty-nine healthy college subjects were recruited to perform a serial finger tapping task at the frequency of 0...
November 7, 2017: Scientific Reports
https://www.readbyqxmd.com/read/29115122/spectroscopic-characterization-of-sulfonate-charge-density-in-ion-containing-polymers
#20
Sarah B Smedley, Tawanda James Zimudzi, Ying Chang, Chulsung Bae, Michael A Hickner
The charge density and hydrogen bonding with water of five different polymer membranes functionalized with various sulfonate sidechain chemistries were investigated using FTIR techniques and DFT calculations. The peak position of the OD stretch of dilute HOD absorbed into the sulfonated poly(sulfone) membranes was studied using FTIR to compare the charge density of the sulfonate headgroup across the different samples which can ultimately be related to the acidity of the proton-form sulfonate moieties. The OD peak was deconvoluted to determine the percentage of headgroup-associated, intermediate, and bulk water...
November 8, 2017: Journal of Physical Chemistry. B
keyword
keyword
76118
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"