keyword
https://read.qxmd.com/read/38607364/proteogenomic-characterization-reveals-estrogen-signaling-as-a-target-for-never-smoker-lung-adenocarcinoma-patients-without-egfr-or-alk-alterations
#1
JOURNAL ARTICLE
Seung-Jin Park, Shinyeong Ju, Sung-Ho Goh, Byoung-Ha Yoon, Jong-Lyul Park, Jeong-Hwan Kim, Seonjeong Lee, Sang-Jin Lee, Yumi Kwon, Wonyeop Lee, Kyung Chan Park, Geon Kook Lee, Seog Yun Park, Sunshin Kim, Seon-Young Kim, Ji-Youn Han, Cheolju Lee
UNLABELLED: Never-smoker lung adenocarcinoma (NSLA) is prevalent in Asian populations, particularly in women. EGFR mutations and anaplastic lymphoma kinase (ALK) fusions are major genetic alterations observed in NSLA, and NSLA with these alterations have been well studied and can be treated with targeted therapies. To provide insights into the molecular profile of NSLA without EGFR and ALK alterations (NENA), we selected 141 NSLA tissues and performed proteogenomic characterization, including whole genome sequencing (WGS), transcriptomic, methylation EPIC array, total proteomic, and phosphoproteomic analyses...
April 12, 2024: Cancer Research
https://read.qxmd.com/read/38418686/computational-discovery-of-novel-fyn-kinase-inhibitors-a-cheminformatics-and-machine-learning-driven-approach-to-targeted-cancer-and-neurodegenerative-therapy
#2
JOURNAL ARTICLE
Dhanushya Gopal, Rajesh Muthuraj, Rex Devasahayam Arokia Balaya, Saptami Kanekar, Iqrar Ahmed, Jaikanth Chandrasekaran
In this study, we explored the potential of novel inhibitors for FYN kinase, a critical target in cancer and neurodegenerative disorders, by integrating advanced cheminformatics, machine learning, and molecular simulation techniques. Our approach involved analyzing key interactions for FYN inhibition using established multi-kinase inhibitors such as Staurosporine, Dasatinib, and Saracatinib. We utilized ECFP4 circular fingerprints and the t-SNE machine learning algorithm to compare molecular similarities between FDA-approved drugs and known clinical trial inhibitors...
February 28, 2024: Molecular Diversity
https://read.qxmd.com/read/38388899/saracatinib-prompts-hemin-induced-k562-erythroid-differentiation-but-suppresses-erythropoiesis-of-hematopoietic-stem-cells
#3
JOURNAL ARTICLE
Lina Ding, Diyu Chen, Yuanshuai Li, Yingjun Xie, Xiaofang Sun, Ding Wang
Human myeloid leukemia cells (such as K562) could be used for the study of erythropoiesis, and mature erythroid markers and globins could be induced during leukemia cell differentiation; however, the pathways involved are different compared with those of hematopoietic stem cells (HSCs).We identified the differentially expressed genes (DEGs) of K562 cells and HSCs associated with stem cells and erythroid differentiation. Furthermore, we showed that hemin-induced differentiation of K562 cells could be induced by serum starvation or treatment with the tyrosine kinase inhibitor saracatinib...
February 22, 2024: Human Cell
https://read.qxmd.com/read/38331847/saracatinib-inhibits-necroptosis-and-ameliorates-psoriatic-inflammation-by-targeting-mlkl
#4
JOURNAL ARTICLE
Jingyi Li, Xingfeng Liu, Yuanyuan Liu, Fangmin Huang, Jiankun Liang, Yingying Lin, Fen Hu, Jianting Feng, Zeteng Han, Yushi Chen, Xuan Chen, Qiaofa Lin, Lanqin Wu, Lisheng Li
Necroptosis is a kind of programmed cell death that causes the release of damage-associated molecular patterns and inflammatory disease including skin inflammation. Activation of receptor-interacting serine/threonine kinase 1 (RIPK1), RIPK3, and mixed lineage kinase domain-like protein (MLKL) is the hallmark of tumour necrosis factor α (TNF)-induced necroptosis. Here, we screened a small-molecule compound library and found that saracatinib inhibited TNF-induced necroptosis. By targeting MLKL, Saracatinib interfered with the phosphorylation, translocation, and oligomerization of MLKL induced by TNF...
February 8, 2024: Cell Death & Disease
https://read.qxmd.com/read/38297084/src-family-kinase-inhibition-rescues-molecular-and-behavioral-phenotypes-but-not-protein-interaction-network-dynamics-in-a-mouse-model-of-fragile-x-syndrome
#5
JOURNAL ARTICLE
Vera Stamenkovic, Jonathan D Lautz, Felicia M Harsh, Stephen E P Smith
Glutamatergic synapses encode information from extracellular inputs using dynamic protein interaction networks (PINs) that undergo widespread reorganization following synaptic activity, allowing cells to distinguish between signaling inputs and generate coordinated cellular responses. Here, we investigate how Fragile X Messenger Ribonucleoprotein (FMRP) deficiency disrupts signal transduction through a glutamatergic synapse PIN downstream of NMDA receptor or metabotropic glutamate receptor (mGluR) stimulation...
January 31, 2024: Molecular Psychiatry
https://read.qxmd.com/read/38248752/perspectives-on-post-covid-19-pulmonary-fibrosis-treatment
#6
REVIEW
Elena Cojocaru, Tudor Cojocaru, Giulia Mihaela Pînzariu, Ioana Vasiliu, Ioana Armașu, Cristian Cojocaru
Pulmonary fibrosis, a critical outcome of chronic inflammatory diseases, has gained prominence in the context of post-coronavirus (post-COVID-19) complications. This review delves into the multifaceted landscape of post-COVID-19 pulmonary fibrosis, elucidating the intricate molecular mechanisms underlying its pathogenesis and highlighting promising therapeutic avenues. Examining the aftermath of severe acute respiratory syndrome-2 (SARS-CoV-2) infection, the review reveals key signaling pathways implicated in the fibrotic cascade...
December 29, 2023: Journal of Personalized Medicine
https://read.qxmd.com/read/38218807/comprehensive-analyses-of-mitophagy-related-genes-and-mitophagy-related-lncrnas-for-patients-with-ovarian-cancer
#7
JOURNAL ARTICLE
Jianfeng Zheng, Shan Jiang, Xuefen Lin, Huihui Wang, Li Liu, Xintong Cai, Yang Sun
BACKGROUND: Both mitophagy and long non-coding RNAs (lncRNAs) play crucial roles in ovarian cancer (OC). We sought to explore the characteristics of mitophagy-related gene (MRG) and mitophagy-related lncRNAs (MRL) to facilitate treatment and prognosis of OC. METHODS: The processed data were extracted from public databases (TCGA, GTEx, GEO and GeneCards). The highly synergistic lncRNA modules and MRLs were identified using weighted gene co-expression network analysis...
January 13, 2024: BMC Women's Health
https://read.qxmd.com/read/38192986/a-novel-prognostic-and-therapeutic-target-biomarker-based-on-complement-related-gene-signature-in-gastric-cancer
#8
JOURNAL ARTICLE
Zuming Liu, Mingwei Yang, Hang Shu, Jianmei Zhou
BACKGROUND: Gastric cancer (GC) is one of the most prevalent cancer types that reduce human life expectancy. The current tumor-node-metastasis (TNM) staging system is inadequate in identifying higher or lower risk of GC patients because of tumor heterogeneity. Research shows that complement plays a dual role in the tumor development and progression of GC. METHODS: We downloaded GC data from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO). A complement-related risk signature was constructed through bioinformatics analysis...
December 31, 2023: Translational Cancer Research
https://read.qxmd.com/read/38175743/evaluation-of-tyrosine-kinase-inhibitors-loaded-injectable-hydrogels-for-improving-connexin43-gap-junction-intercellular-communication
#9
JOURNAL ARTICLE
Li Zheng, Wen Shi, Bo Liu, Bin Duan, Paul L Sorgen
Myocardial infarction (MI) is one of the leading causes of death in the developed world, and the loss of cardiomyocytes plays a critical role in the pathogenesis of heart failure. Implicated in this process is a decrease in gap junction intercellular communication due to remodeling of Connexin43 (Cx43). We previously identified that intraperitoneal injection of the Pyk2 inhibitor PF4618433 reduced infarct size, maintained Cx43 at the intercalated disc in left ventricle hypertrophic myocytes, and improved cardiac function in an MI animal model of heart failure...
January 4, 2024: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/38167009/characterization-of-gastric-cancer-stimulated-signaling-pathways-and-function-of-ctgf-in-cancer-associated-fibroblasts
#10
JOURNAL ARTICLE
Kyoung-Min Choi, Boram Kim, Su-Min Lee, Jisoo Han, Ha-Song Bae, Su-Bhin Han, Dagyeong Lee, In-Hye Ham, Hoon Hur, Eunjung Kim, Jae-Young Kim
BACKGROUND: Cancer-associated fibroblasts (CAFs) are key components of the tumor microenvironment (TME) that play an important role in cancer progression. Although the mechanism by which CAFs promote tumorigenesis has been well investigated, the underlying mechanism of CAFs activation by neighboring cancer cells remains elusive. In this study, we aim to investigate the signaling pathways involved in CAFs activation by gastric cancer cells (GC) and to provide insights into the therapeutic targeting of CAFs for overcoming GC...
January 2, 2024: Cell Communication and Signaling: CCS
https://read.qxmd.com/read/38142284/construction-of-a-prognostic-model-for-lung-adenocarcinoma-based-on-m6a-m5c-m1a-genes
#11
JOURNAL ARTICLE
Hao Ding, Yuanyuan Teng, Ping Gao, Qi Zhang, Mengdi Wang, Yi Yu, Yueping Fan, Li Zhu
BACKGROUND: Developing a prognostic model for lung adenocarcinoma (LUAD) that utilizes m6A/m5C/m1A genes holds immense importance in providing precise prognosis predictions for individuals. METHODS: This study mined m6A/m5C/m1A-related differential genes in LUAD based on public databases, identified LUAD tumor subtypes based on these genes, and further built a risk prognostic model grounded in differential genes between subtypes. The immune status between high- and low-risk groups was investigated, and the distribution of feature genes in tumor immune cells was analyzed using single-cell analysis...
December 23, 2023: Human Molecular Genetics
https://read.qxmd.com/read/38031192/overcoming-bcr-abl1-dependent-and-independent-survival-mechanisms-in-chronic-myeloid-leukaemia-using-a-multi-kinase-targeting-approach
#12
JOURNAL ARTICLE
Caroline Busch, Theresa Mulholland, Michele Zagnoni, Matthew Dalby, Catherine Berry, Helen Wheadon
BACKGROUND: Despite improved patient outcome using tyrosine kinase inhibitors (TKIs), chronic myeloid leukaemia (CML) patients require life-long treatment due to leukaemic stem cell (LSC) persistence. LSCs reside in the bone marrow (BM) niche, which they modify to their advantage. The BM provides oncogene-independent signals to aid LSC cell survival and quiescence. The bone-morphogenetic pathway (BMP) is one pathway identified to be highly deregulated in CML, with high levels of BMP ligands detected in the BM, accompanied by CML stem and progenitor cells overexpressing BMP type 1 receptors- activin-like kinases (ALKs), especially in TKI resistant patients...
November 29, 2023: Cell Communication and Signaling: CCS
https://read.qxmd.com/read/38026620/exploring-the-benefits-of-in-diet-versus-repeated-oral-dosing-of-saracatinib-azd0530-in-chronic-studies-insights-into-pharmacokinetics-and-animal-welfare
#13
JOURNAL ARTICLE
Suraj S Vasanthi, Nyzil Massey, Suresh N Nair, Jonathan P Mochel, Lucas Showman, Thimmasettappa Thippeswamy
Saracatinib/AZD0530 (SAR), a Src tyrosine kinase inhibitor, mitigates seizure-induced brain pathology in epilepsy models upon repeated oral dosing. However, repeated dosing is stressful and can be challenging in some seizing animals. To overcome this issue, we have incorporated SAR-in-Diet and compared serum pharmacokinetics (PK) and brain concentrations with conventional repeated oral dosing. Saracatinib in solution or in-diet was stable at room temperature for >4 weeks (97 ± 1...
2023: Frontiers in Veterinary Science
https://read.qxmd.com/read/38025259/the-effects-of-src-tyrosine-kinase-inhibitor-saracatinib-on-the-markers-of-epileptogenesis-in-a-mixed-sex-cohort-of-adult-rats-in-the-kainic-acid-model-of-epilepsy
#14
JOURNAL ARTICLE
Nikhil S Rao, Marson Putra, Christina Meyer, Aida Almanza, Thimmasettappa Thippeswamy
Neurodegeneration and neuroinflammation are key processes of epileptogenesis in temporal lobe epilepsy (TLE). A considerable number (∼30%) of patients with epilepsy are resistant to currently available antiseizure drugs and thus there is a need to develop adjunct therapies to modify disease progression. A vast majority of interventional strategies to treat TLE have utilized males which limits the translational nature of the studies. In this study, we investigated the effects of repeated low-dose kainic acid (KA) injection on the initial status epilepticus (SE) and the effects of Src kinase inhibitor, saracatinib (SAR/AZD0530; 20 mg/kg, oral, daily for 7 days), in a mixed-sex cohort of adult Sprague Dawley rats during early epileptogenesis...
2023: Frontiers in Molecular Neuroscience
https://read.qxmd.com/read/38023262/prognostic-value-analysis-of-cholesterol-and-cholesterol-homeostasis-related-genes-in-breast-cancer-by-mendelian-randomization-and-multi-omics-machine-learning
#15
JOURNAL ARTICLE
Haodong Wu, Zhixuan Wu, Daijiao Ye, Hongfeng Li, Yinwei Dai, Ziqiong Wang, Jingxia Bao, Yiying Xu, Xiaofei He, Xiaowu Wang, Xuanxuan Dai
INTRODUCTION: The high incidence of breast cancer (BC) prompted us to explore more factors that might affect its occurrence, development, treatment, and also recurrence. Dysregulation of cholesterol metabolism has been widely observed in BC; however, the detailed role of how cholesterol metabolism affects chemo-sensitivity, and immune response, as well as the clinical outcome of BC is unknown. METHODS: With Mendelian randomization (MR) analysis, the potential causal relationship between genetic variants of cholesterol and BC risk was assessed first...
2023: Frontiers in Oncology
https://read.qxmd.com/read/38018591/idiopathic-pulmonary-fibrosis-addressing-the-current-and-future-therapeutic-advances-along-with-the-role-of-sotatercept-in-the-management-of-pulmonary-hypertension
#16
REVIEW
Dalia D Hadi, Mohammed Dheyaa Marsool Marsool, Ali Dheyaa Marsool Marsool, Neel Vora, Sajjad G Al-Badri, Nabeel H K Al-Fatlawi, Ameer F Abbas Al Wssawi, Abdullah M T Al-Ibraheem, Khadija A Hamza, Priyadarshi Prajjwal, Mohammed A Mateen, Omniat Amir
BACKGROUND: Idiopathic pulmonary fibrosis (IPF) is a progressive and debilitating lung disease characterized by irreversible scarring of the lungs. The cause of IPF is unknown, but it is thought to involve a combination of genetic and environmental factors. There is no cure for IPF, and treatment is focused on slowing disease progression and relieving symptoms. AIMS: We aimed in this review to investigate and provide the latest insights into IPF management modalities, including the potential of Saracatinibas a substitute for current IPF drugs...
November 2023: Immunity, Inflammation and Disease
https://read.qxmd.com/read/37991388/a-multi-omic-investigation-of-lung-adenocarcinoma-molecular-subtypes
#17
JOURNAL ARTICLE
Kung-Hao Liang, Yung-Hung Luo, Mong-Lien Wang, Shih-Hwa Chiou, Yuh-Min Chen, Han-Shui Hsu
BACKGROUND: Lung adenocarcinoma-an aggressive and life-threatening malignancy-is a type of non-small cell lung cancer. Despite medical advancements, the prognosis of lung adenocarcinoma remains unfavorable, likely because of its heterogeneous nature. Furthermore, few subtype-specific treatments are available for lung adenocarcinoma. This study was conducted to explore the molecular subtypes of lung adenocarcinoma. METHODS: We performed a joint analysis of transcriptome and proteome data from East Asian patients with lung adenocarcinoma (nonsmokers, 86...
November 22, 2023: Journal of the Chinese Medical Association: JCMA
https://read.qxmd.com/read/37938546/crosstalk-with-lung-fibroblasts-shapes-the-growth-and-therapeutic-response-of-mesothelioma-cells
#18
JOURNAL ARTICLE
Yakinthi Chrisochoidou, Rajat Roy, Pooyeh Farahmand, Guadalupe Gonzalez, Jennifer Doig, Lukas Krasny, Ella F Rimmer, Anne E Willis, Marion MacFarlane, Paul H Huang, Neil O Carragher, Alison F Munro, Daniel J Murphy, Kirill Veselkov, Michael J Seckl, Miriam F Moffatt, William O C Cookson, Olivier E Pardo
Mesothelioma is an aggressive cancer of the mesothelial layer associated with an extensive fibrotic response. The latter is in large part mediated by cancer-associated fibroblasts which mediate tumour progression and poor prognosis. However, understanding of the crosstalk between cancer cells and fibroblasts in this disease is mostly lacking. Here, using co-cultures of patient-derived mesothelioma cell lines and lung fibroblasts, we demonstrate that fibroblast activation is a self-propagated process producing a fibrotic extracellular matrix (ECM) and triggering drug resistance in mesothelioma cells...
November 8, 2023: Cell Death & Disease
https://read.qxmd.com/read/37893096/immunotherapy-and-targeted-therapies-efficacy-in-thymic-epithelial-tumors-a-systematic-review
#19
REVIEW
Apostolos C Agrafiotis, Mariana Brandão, Thierry Berghmans, Valérie Durieux, Christiane Jungels
BACKGROUND: Thymic epithelial tumors (TET) are rare neoplasms of the anterior mediastinum. Surgery is the mainstay treatment for resectable TET, whereas systemic treatments are reserved for unresectable and metastatic tumors. The development of new treatments, such as immune checkpoint inhibitors (ICI) and targeted therapies, with promising results in other types of solid tumors, has led to the investigation of their potential efficacy in TET. The study of tumor microenvironments (TME) is another field of investigation that has gained the interest of researchers...
October 8, 2023: Biomedicines
https://read.qxmd.com/read/37860756/understanding-cancer-drug-resistance-with-sleeping-beauty-functional-genomic-screens-application-to-mapk-inhibition-in-cutaneous-melanoma
#20
JOURNAL ARTICLE
Eliot Y Zhu, Jacob L Schillo, Sarina D Murray, Jesse D Riordan, Adam J Dupuy
Combined BRAF and MEK inhibition is an effective treatment for BRAF-mutant cutaneous melanoma. However, most patients progress on this treatment due to drug resistance. Here, we applied the Sleeping Beauty transposon system to understand how melanoma evades MAPK inhibition. We found that the specific drug resistance mechanisms differed across melanomas in our genetic screens of five cutaneous melanoma cell lines. While drivers that reactivated MAPK were highly conserved, many others were cell-line specific...
October 20, 2023: IScience
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